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Rapidly developing countries are facing severe environmental problems at an extent that industrialized countries did not have to solve in comparable periods. Freshwaters belong to the ecosystems with the most severe impacts despite they are one of the most vital resources. The Lerma River is one example of a heavily degraded freshwater ecosystem in the rapidly developing country of Mexico. A number of NGOs and governmental institutions have made great efforts to elaborate strategies for the restoration and rehabilitation of the river system during the last years. Scientists from different disciplines and institutions met for a workshop at ININ in February 2009 to discuss the actual degradation of the upper Lerma River and argue about solutions for its sustainable restoration. This also included the presentation and discussion of new technologies that are currently in an experimental stage, but have the potential to solve different river pollution problems in the near future.