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Quantifizierung der Schädigung von DNA in wässriger Lösung unter direkter Elektronenbestrahlung
(2018)
To cure cancer radiation therapy is used to kill tumor cells.
It is based on radiation induced damage to biomolecules.
Especially DNA damage is of key interest due to its central role in apoptosis and mutation.
Because of the high amount of water in biological tissue, most of the damage is caused by the secondary particles produced by the inelastic scattering of ionizing radiation and water.
A detailed understanding of the underlying molecular processes under physiological conditions is the prerequisite to develop more efficient therapies.
Goal of this work is to quantify the DNA damage caused by ionizing radiation in dependence of the inelastic scattering events and the energy deposit within the microscopic target volume of biological relevance.
The irradiations have to be performed in liquid, under consideration of the chemical environment.
Therefore, a new combination of experiment and Monte-Carlo simulations was developed and tested.
To make it possible to irradiate liquids with electrons within scanning electron microscopes a new sample holder was constructed incorporating an electron transparent nanomembrane.
It makes it possible to irradiate DNA, proteins or cells at different pH, salinity and in the presence of cosolutes.
%The most important results of this work are as follows:
The median lethal dose for a model system of plasmid DNA and water was determined by the combination of experimental data, particle scattering simulations (Geant4-DNA) and diffusion calculations as D0.5=(1.7+-0.3) Gy.
From the convolution of plasmid positions and the spatially resolved energy deposit, as determined by electron scattering simulations, the histogram of the energy deposit within the target volume of the plasmids and the microscopic median lethal energy deposit was calculated as E0.5=6+-4eV.
It could be deduced that on average less than two ionization events are sufficient to cause a single-strand-break.
The relation of single-strand-breaks (SSB) to double-strand-breaks (DSB), which is of importance for microdosimetric modeling, was determined as SSB:DSB = 12:1.
The presented method for the determination of microscopic dose-damage relations was further extended to be applicable for general irradiation experiments.
It becomes independent of the type of primary radiation used, the experimental geometry, and the diffusional properties of the molecules under investigation.
This way different experimental systems with varying, inhomogeneous energy deposit characteristics become comparable with each other, which is not possible when only macroscopic averaged values are taken into account.
In addition, the radiation protection properties of the compatible solute ectoine, as well as its influence on the water properties and biomolecules were investigated.
%In addition, the influence of the compatible solute ectoine on water, biomolecules and its radiation protection properties were investigated.
Raman spectroscopy revealed a concentration dependent increase of the collective water modes in the OH-stretching region, which was found to be independent of the sodium chloride concentration.
Molecular dynamic simulations showed that the zwitterionic properties of ectoine lead to its half-chair conformation.
The hydrogen bonds in the first hydration shell are more stable and have an increased lifetime compared to the bulk water.
Irradiation experiments with DNA in the presence of 1M ectoine revealed an increase of the survival rate by a factor of 1.41 as compared to the absence of ectoine.
The protective properties of ectoine result from the increase of the inelastic scattering probabilities of low energy electrons at the acoustic vibrational modes of water and its properties as OH-radical scavenger.
This was shown by Raman spectroscopy and electron paramagnetic resonance measurements (EPR).
Dynamics and ionic conductivity of ionic liquid crystals forming a hexagonal columnar mesophase
(2018)
For the first time, the molecular mobility of two linear-shaped tetramethylated guanidinium triflate ionic liquid crystals (ILCs) having different length of alkyl chains were investigated by a combination of broadband dielectric spectroscopy (BDS) and specific heat spectroscopy (SHS). By self-assembly, these ILCs can form a hexagonal ordered mesophase besides plastic crystalline phases and the isotropic state. Three dielectric active processes were found by BDS for both samples. At low temperatures, a γ-process in the plastic crystalline state is observed which is assigned to localized fluctuations of methyl groups including nitrogen atoms in the guanidinium head. At higher temperatures but still in the plastic crystalline state, an α1-process takes place. An α2 process was detected by SHS but with a completely different temperature dependence of the relaxation times than that of the α1-relaxation. This result is discussed in detail, and different molecular assignments of the processes are suggested. At even higher temperatures, electrical conductivity is detected and an increase in the DC conductivity by four orders of magnitude at the phase transition from the plastic crystalline to the hexagonal columnar mesophase is found. This result is traced to a change in the charge transport mechanism from a delocalized electron hopping in the stacked aromatic systems (in the plastic phase) to one dominated by an ionic conduction in the quasi-1D ion channels formed along the supermolecular columns in the ILCs hexagonal mesophases.
Polymers with intrinsic microporosity are promising candidates for the active separation layer in gas separation membranes. Here, the vibrational density of states (VDOS) for PIM-1, the prototypical polymer with intrinsic microporosity, is investigated by means of inelastic neutron scattering. The results are compared to data measured for a more conventional high-performance polyimide used in gas separation membranes (Matrimid). The measured data show the characteristic low frequency excess contribution to VDOS above the Debye sound wave level, generally known as the Boson peak in glass-forming materials. In comparison to the Boson peak of Matrimid, that of PIM-1 is shifted to lower frequencies. This shift is discussed considering the microporous, sponge-like structure of PIM-1 as providing a higher compressibility at the molecular scale than for conventional polymers. For an annealed PIM-1 sample, the Boson peak shifts to higher frequencies in comparison to the un-annealed sample. These changes in the VDOS of the annealed PIM-1 sample are related to changes in the microporous structure as confirmed by X-ray scattering.
Der Vortrag gibt den aktuellen Stand der Normung im Bereich der Oberflächen-technik insbesondere der Oberflächenanalytik und der Oberflächenmess- und -prüftechnik wider.
Vorgestellt wird der Status technischer Berichte, Normenentwürfe und Normen u.a. zur Charakterisierung von funktionellen Glasoberflächen für bioanalytische Anwendungen, zur Messung der Schichtdicke von Nanomaterialien mittels Ellipsometrie, zur Kalibrierung von Interferometern und Interferenzmikroskopen für die Formmessung, zur Rockwelleindringprüfung zur Bewertung der Schicht-haftung, zu den Grundlagen der Ellipsometrie, zur Messung der Schichtdicke mittels Wirbelstromverfahren, zur Schichtpotentialmessung von Mehrfach-Nickelschichten, zu Filtern und Augenschutzgeräten gegen Laserstrahlung sowie zur Bestimmung der Schichthaftung mittels Zugversuch.
Quantifizierung der Schädigung von DNA in wässriger Lösung unter direkter Elektronenbestrahlung
(2018)
Bei der Behandlung von Krebs wird Strahlentherapie zur Zerstörung von Tumorzellen eingesetzt. Der zugrunde liegende Wirkmechanismus ist die durch ionisierende Strahlung verursachte Schädigung an Biomolekülen. Dabei kommt den Schädigungsprozessen an DNA aufgrund ihrer zentralen Rolle in Mutation und Zelltod eine besondere Bedeutung zu. Durch den hohen Wasseranteil in menschlichen Zellen findet ein Großteil der inelastischen Streuprozesse an Wassermolekülen statt und führt zur deren Radiolyse. Die so entstehenden Radiolyseprodukte sind für einen Großteil des Schadens an DNA verantwortlich. Ein detailliertes Verständnis der zugrunde liegenden molekularen Interaktion ist die Voraussetzung um effizientere Therapien zu entwickeln.
Ziel dieser Arbeit ist es, die Schädigung von DNA durch ionisierende Strahlung in Abhängigkeit der inelastischen Streuevents und des Energieeintrags innerhalb des biologisch relevanten mikroskopischen Treffervolumens zu quantifizieren. Die Bestrahlungen müssen dazu in Flüssigkeit, unter Berücksichtigung der chemischen Umgebung durchgeführt werden, welche die indirekten Schäden vermittelt. Deshalb wurde eine neuartige Kombination aus Experiment und Monte- Carlo-Simulationen entworfen und angewandt. Um Elektronenbestrahlung flüssiger Lösungen innerhalb eines Rasterelektronenmikroskops zu ermöglichen, wurde ein Probenhalter mit einer für Elektronen durchlässigen Nanomembran entwickelt. So können Bestrahlungen an DNA,
Proteinen, und Zellen bei verschiedenen pH-Werten, Salzkonzentrationen oder in Anwesenheit von Kosoluten durchgeführt werden. Für ein Modellsystem aus Plasmid-DNA in Wasser wurde damit die mittlere letale Dosis aus der Kombination der experimentellen Daten, Partikelstreusimulationen (Geant4-DNA) und Diffusionsberechnungen zu D1/2 = 1.7 ± 0.3 Gy bestimmt. Aus der Konvolution der Plasmidpositionen mit dem durch Elektronenstreusimulationen bestimmten ortsaufgelösten Energieeintrag wurde dessen Häufigkeitsverteilung im Targetvolumen der
Plasmide sowie der mittlere mikroskopische letale Energieeintrag berechnet als E1/2 = 6 ± 4 eV .
Es wurde gefolgert, dass weniger als zwei Ionisationsprozesse im sensitiven Targetvolumen der DNA im Mittel zu einem Einzelstrangbruch führen. Das für mikrodosimetrische Modellierungen wichtige Verhältnis von Einzelstrangbrüchen (SSB) zu Doppelstrangbrüchen (DSB) wurde als SSB : DSB = 12 : 1 bestimmt. Die vorgestellte Methode zur Bestimmung mikroskopischer Schaden-Dosis Relationen wurde auf weitere Klassen von Bestrahlungsexperimenten verallgemeinert. Dadurch ist die Methode unabhängig von der verwandten Primärstrahlung, der Probengeometrie und den Diffusionseigenschaften der untersuchten Moleküle anwendbar. So wird eine Vergleichbarkeit experimenteller Systeme mit inhomogenen Energieverteilungen erreicht, die bei ausschließlicher Betrachtung makroskopischer, gemittelter Größen nicht gegeben ist.
Des weiteren wurden die Strahlenschutzfunktionen des kompatiblen Soluts Ectoine und sein Einfluss auf Wasser und Biomoleküle untersucht. Mittels Ramanspektroskopie wurde ein kon-zentrationsabhängiger Anstieg des Anteils der Kollektivmoden des Wassers der OH-Streckschwingungen und dessen Unabhängigkeit von der Natriumchloridkonzentration beobachtet.
Molekulardynamik-Simulationen zeigten, dass die zwitterionischen Eigenschaften zur Bildung einer half-chair Konformation Ectoines führen. Die Wasserstoffbrückenbindungen in der ersten Hydrationshülle sind signifikant stabiler und besitzen höhere Lebensdauern als das Bulk-Wasser. Bestrahlung von DNA in Anwesenheit von 1 M Ectoine führt zu einer Erhöhung der Überlebensrate um den Faktor 1,41. Die Schutzfunktion wurde auf die Erhöhung des Streuquerschnitts niederenergetischer Elektronen an den akustischen Vibrationsmoden des Wasser durch Ectoine und seine Wirkung als OH-Radikalfänger zurückgeführt. Dies wurde mittels Ramanspektroskopie und Elektronenspinresonanzmessungen (ESR) nachgewiesen.
Hybrid materials have attracted growing interest during the last decade, particularly due to their extraordinary properties. Cycloalyphatic-epoxy oligosiloxane (CEO) resin was shown to be a good candidate as a barrier material for the encapsulation purposes. Incorporation of inorganic nanoparticles such as Boehmite (BA) into polymers was observed to modify their specific characteristics, in particular, thermal, thermo-oxidative and barrier ones. In this work, novel BA-embedded organic inorganic hybrid nanocomposite material was engineered by combining the advantageous properties of hybrid polymers and nanoparticle enhancement effect. Impacts of particles on the photocuring kinetics, degree of crosslinking and the resultant changes in the thermal properties of the cured films were investigated. CEO synthesis via condensation reaction was confirmed by 1H and 29Si NMR. The particle distribution within the films was verified by SEM including transmission mode coupled with EDX elemental analysis. Photocuring kinetics and thermal properties of the films were studied by in situ FTIR spectroscopy and DSC with TGA, respectively.
The quantification of radiation induced damage to DNA in aqueous en-
vironment is of fundamental interest for dosimetry and its application
in radiation-therapy and protection. We present a combined experi-
mental and simulational approach to quantify and compare radiation
induced damage to biomolecules in liquid environment for a wide range
of primary radiation sources e. g. photons, electrons or ions and tar-
gets, such as DNA, proteins or cells.[1] To show its viability, we will
apply this method to an experimentally challenging systems, the di-
rect irradiation of plasmid DNA (pUC19) in water with electrons as
primary particles. Here we combine Geant4 electron-scattering simula-
tions with calculations concerning the diffusion and convection induced
movement of the biomolecules, within a coarse-grained model of the
irradiated liquid. Additionally a microscopic target model for the plas-
mid DNA based on the relation of lineal energy and radiation quality
is used to calculate the effective target volume.
Universität Berlin Radiation damage to biomolecules such as DNA, is the reason to treat cancer via radiation therapy. The understanding of the molecular processes and the quantification of the underlying damaging mechanisms is necessary to develope more efficient irradiation protocols for cancer therapy. Thereby damage to DNA is of key interest due to its central role in reproduction and mutation. Due to the high amount of water in biological tissue, most of the damage is caused by the secondary particles which are produced by the interaction of ionizing radiation with water. Thereby a multitude of species are produced, e.g. kinetic low energy electrons, prehydrated electrons, OH-radicals and ions. The quantification of the contribution to DNA damage by the various species is of interest. Here we present an experimental approach to disentangle their relative DNA strand break yields. Plasmid DNA (pUC19 ) is irradiated in water with electrons under the presence of different scavengers. The presented preliminary results reveal the relative contributions of OH-radicals, low energy electrons and prehydrated electrons and their DNA single and double strand break yields.
In recent years, substantial efforts have been devoted to investigating nanoscopic confinement of polymers, and its effect on glassy dynamics. Broadband Dielectric Spectroscopy (BDS) was used to study the dynamics of ultra-thin films of PVME/PS 50/50 wt% blend, employing a novel nano-structured capacitor sample arrangement. The investigated system shows a complex dynamic behavior. First, an α-relaxation, related to a bulk-like layer was found. Second, an α’-relaxation was observed, characteristic for dynamically asymmetric blends, where the out of equilibrium dynamics is attributed to weakly-cooperative PVME segments relaxing within a frozen environment of PS segments. Thirdly, for thinnest films, an Arrhenius-like process was dominant in the dielectric spectra, indicating localized fluctuations of the segments. Relaxation rates of this process resembled that of the degenerated α-relaxation of the adsorbed layer, found for pure PVME, thus it was assigned accordingly. For thinnest films, this process undergoes a further confinement, due to the topological constraints, introduced by PS. Such multiple confinement effect has not been reported for ultra-thin films of polymer blends, before this study.
The polymer matrix region near a filler surface, termed as the interface, witnessed increasing interest, due to its possible influence on the macroscopic properties of the nanocomposite. The interphase is expecting to have different segmental dynamic, as compared to the pure matrix, which can percolate into the entire system. Here, the segmental dynamics of epoxy/Boehmite nanocomposite was studied by Broadband Dielectric Spectroscopy. It was found that an artificial relaxation process is present in the nanocomposite, on the contrary to the pure epoxy system. It was assigned to constrained fluctuations of polymer chains in the interfacial region, due to the nanofiller. However, the overall dynamic Tg of the system decreased with increasing filler concentration, indicating higher segmental mobility. This was in accordance with Temperature Modulated DSC investigations of specific heat capacity of the system, which was found to increase with increasing filler concentration, up to 10 wt%, indicating increasing mobility of the polymer matrix segments. Surprisingly, for the highest filler content, the heat capacity decreases, implying a formation of an immobilized rigid amorphous phase in the interfacial region.
For the first time, the molecular mobility of two linear-shaped tetramethylated guanidinium triflates ionic liquid crystals (ILCs) having different length of alkyl chains was investigated by a combination of broadband dielectric spectroscopy (BDS) and specific heat spectroscopy (SHS). SHS was carried out by differential AC-chip calorimetry at higher frequencies and temperature modulated DSC at lower frequencies. These ILCs can form a hexagonal ordered columnar mesophase. Two relaxation processes were found by BDS for both samples. At low temperatures, a γ-processes is observed which is assigned to specific localized fluctuations. At higher temperatures, α1-processes take place. α2 processes were also detected by SHS but with a completely different temperature dependence of the relaxation times. Different molecular assignments of α1- and α2-processes are suggested. At even higher temperatures, conductivity was detected by BDS.
Collective Orientational Order and Phase Behavior of a Discotic Liquid Crystal under Confinement
(2018)
Discotic liquid crystals (DLCs) are a promising class of soft matter for electronic applications. This is due to their ability to self-organize into columns in a hexagonal columnar mesophase, driven by the overlapping of the π orbitals of their aromatic cores. This leads to a high charge-carrier mobility along the column axis. Previous studies on DLCs showed that their properties, such as phase transition temperatures and enthalpies, are susceptible to nanoconfinement. In this study, 2,3,6,7,10,11 hexakis[hexyloxy] triphenylene (HAT6) was confined into parallel aligned cylindrical nanopores of anodic aluminum oxide (AAO) membranes by melt infiltration. Furthermore, the pore surfaces of a series of membranes were chemically modified, resulting in a more hydrophobic pore surface than the unmodified ones. Collective orientational order and phase behavior of HAT6 confined into modified and unmodified nanopores of AAO were investigated by broadband dielectric spectroscopy and differential scanning calorimetry respectively.
Hyperbranched PAMAM/ Kaolinite Nanocomposites: Decoupling phenomenon and conductivity mechanism
(2018)
Increasing demands of the daily life requires a continuous discovering of new and tailored properties of materials that can be utilized in covering the requirements in several fields. Hyperbranched polymers (HBPs) are macromolecules that are characterized by a highly branched structure and multiplicity of reactive end groups, which could be promising for numerous applications. Here, hyperbranched poly(amidoamine) (HPAMAM)/ Ka nanocomposites was prepared via an in-situ polymerization and an ex-situ method. The latter approach leads to a partly intercalated structure of the nanocomposites, while the former method results in an exfoliated morphology. Α combination of different techniques such as broadband dielectric spectroscopy (DBS), SXAS, FTIR, TEM, and DSC are employed to study the prepared samples. For the HPAMAM/ Ka-DCA nanocomposites (an ex-situ samples), the results indicated that the dc conductivity is increased by 4 orders of magnitude, with increasing concentration of the Ka-DCA. As an interesting result is that a significant decoupling between the characteristic time for conductivity relaxation and the segmental dynamics was observed, which depends on the concentration of the nanofiller. For the HPAMAM/ EDA nanocomposites (an in-situ polymerization), the dc conductivity is also increased with increasing the concentration of the Ka-EDA. The decoupling phenomenon and conductivity mechanism are discussed in detail.
Hyperbranched polyamine ester (HPAE)/ kaolinite nanocomposites were papered via an ex situ (solution-based) method. The kaolinite has been modified by dodecylamine (DCA). SAXS measurements revealed that the Ka interlayer space increased from 0.71 to 3.6 nm-1. A partly exfoliated structure of the HPA/Ka-DCA nanocomposites was proved by SAXS and TEM. By a combination of BDS and SHS, the relaxation properties of the nanocomposites were investigated in dependence on frequency and temperature. The activation energies of γ-relaxation for the nanocomposites were lower than the values found for the pure HPAE. The segmental dynamics (α- relaxation) was found to be screened out by the conductivity contribution. While it is retrieved by SHS employing AC-chip calorimetry. A systematic change of the dynamic glass transition estimated by AC-chip calorimetry was observed, which is in agreement with a behavior expected for a confined sample. The confinement effect of the Ka-DCA nanofillers reduces the glass transition temperature Tg and enhances, meanwhile, the electrical conductivity of the polymer. By comparing the temperature dependence of the dynamic glass transition measured with SHS and that of the dc conductivity measured by dielectric spectroscopy, a decoupling in their temperature dependencies was found.
With increasing concentration of the nanofiller, which results in a stronger glass-formation behavior, this decoupling becomes weaker.
The molecular dynamics and ionic conductivity of ionic liquid crystals (ILCs) forming a columnar mesophase, two linear-shaped tetramethylated guanidinium triflates ILCs having different lengths of alkyl chains, were investigated by a combination of Broadband Dielectric Spectroscopy (BDS) and Specific Heat Spectroscopy (SHS). Three processes were detected by BDS; at low temperature γ-process, at higher temperatures α-process and at even higher temperatures conductivity. The γ-process indicates localized fluctuations, and the α-process designates cooperative fluctuations. Slightly different restrictions were found for conductivity processes of LC536 and LC537 due to the slightly different lengths of alky chains. The conductivity mechanisms in the plastic crystalline and the columnar mesophase have been revealed by BDS and different charge carriers were assigned for the different phases. Furthermore, the cooperative dynamics were also probed by SHS. The cooperative dynamics probed by the different techniques (BDS and SHS) compared, and assigned to the different restrictions on the cooperativity due to the difference in the sensitivity of the techniques.
One of the biggest problems in high-voltage silicone rubber insulation cable accessories is the damage on electrical treeing, initiated by partial discharges. The electrical treeing starts at unavoidable imperfections inside the material or at interfaces. The damage is usually irreversible and leads around the starting points to a partial destruction of the material. To prolong the lifetime and thereby to increase the assurance of the structural component commonly, for mechanical improvement constituted filler is modified to obtain a self-healing silicone rubber. Damage mechanism is analysed to address the filler to the damage mode.