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Industrial production of the cell protectant ectoine: protection mechanisms, processes, and products
(2014)
Bacteria, Archaea and Eukarya can adapt to Saline environments by accumulating compatible solutes in order to maintain an osmotic equilibrium. Compatible solutes are of diverse chemical structure (sugars, polyols, amino acid derivatives) and are beneficial for bacterial cells not only as osmoregulatory solutes, but also as protectants of proteins by mitigating detrimental effects of freezing, drying and high temperatures. The aspartate derivative ectoine is a wide spread compatible solute in Bacteria and possesses additional protective properties compared with other compatible solutes, and stabilizes even whole cells against stresses such as UV radiation or cytotoxins. The protective properties of ectoine for proteins can be explained by its strong (kosmotropic) interaction with water and subsequent exclusion from Protein surface, the decrease of the solubility of the peptide backbone and the strengthening of intramolecular hydrogen bonds (secondary structures). The stabilizing and UV-protective properties of ectoine attracted industry, which saw the potential to market ectoine as a novel active component in health care products and cosmetics. In joint efforts of industry and research large-scale fermentation procedures have been developed with the halophilic bacterium Halomonas elongata used as a producer strain. The two key technologies that allow for the annual production of ectoine on a scale of tons are the bacterial milking procedure and the development and application of ectoine-excreting mutants (“leaky” mutant). The details of these two procedures including the strain development and Fermentation processes will be introduced and current and future applications of ectoine will be discussed.
The formation of biofilms on different materials provokes high costs in industrial processes, as well as in medical applications. Therefore, the interest in development of new materials with improved surfaces to reduce bacterial colonization rises. In order to evaluate the quality and safety of these new materials, it is highly important to ensure world-wide comparable tests that are relying on statistical evidence. The only way to reach this statistical safety is through a high-throughput Screening under standardized test conditions.
We developed a flow through system for cultivation of biofilm-forming bacteria under controlled conditions with a total capacity for testing up to 32 samples in parallel. Quantification of the surface colonization was done by staining the bacterial cells with a fluorescence marker, followed by epifluorescence microscopy. More than 100 images of each sample were automatically taken and the surface coverage was estimated with the free open source software gmic (http://gmic.eu), followed by a precise statistical evaluation. Overview images of all gathered pictures of the whole material coupon were generated to illuminate the colonization characteristics of the selected bacteria on certain materials.
With this method, differences in bacterial colonization on different materials can be quantified in a statistically validated manner. The innovative and solid test procedure will support the design of improved materials for medical and industrial applications such as implants, ship hulls, pipelines, heat exchangers, aquaculture equipments, photovoltaic-panels and fundaments of wind power plants.
A new tool in material science - Targeted disruption of melanin synthesis in rock-inhabiting fungi
(2016)
The ability to survive almost absolute dehydration through air-drying is a remarkable feature of rock-inhabiting microcolonial fungi (MCF), which colonise rock surfaces in hot and cold deserts. Understanding of the underlying mechanisms which allow this group of fungi to conquer natural and man-made environments requires a set of modern biological techniques and approaches that are under development in our laboratory. We will present an overview of the targeted disruption of melanin biosynthesis genes in the rock-inhabiting Knufia petricola and give inside into the lines of research and the network of supporting laboratories that made this progress possible.
A new tool in material science - Targeted disruption of melanin synthesis in rock-inhabiting fungi
(2016)
The ability to survive almost absolute dehydration through air-drying is a remarkable feature of rock-inhabiting microcolonial fungi (MCF), which colonise rock surfaces in hot and cold deserts. Understanding of the underlying mechanisms which allow this group of fungi to conquer natural and man-made environments requires a set of modern biological techniques and approaches that are under development in our laboratory. We will present an overview of the targeted disruption of melanin biosynthesis genes in the rock-inhabiting Knufia petricola and give inside into the lines of research and the network of supporting laboratories that made this progress possible.
Sewage sludge has one of the highest phosphorus (P) potentials of all waste materials. Therefore, P-recycling from sewage sludge could contribute to close the P-cycle. Recently, various processes for P-recovery have been developed, but most of them were not established in industrial scale due to their poor economic feasibility. In the present study, two common methods (low-temperature conversion at 400-500°C and thermochemical treatment at 950-1000°C were investigated and combined to produce highly bioavailable P-fertilizers from two different types of sewage sludge based on chemical phosphorus precipitation with FeCl2 and enhanced biological phosphorus removal.
The halophilic bacterium Halomonas elongata takes up the compatible solute ectoine via the osmoregulated TRAP transporter TeaABC. A fourth orf (teaD) is located adjacent to the teaABC locus that encodes a putative universal stress protein (USP). By RT-PCR experiments we proved a cotranscription of teaD along with teaABC. Deletion of teaD resulted in an enhanced uptake for ectoine by the Transporter TeaABC and hence a negative activity regulation of TeaABC by TeaD. Atranscriptional regulation viaDNA binding could be excluded. ATP binding to native TeaD was shown by HPLC, and the Crystal structure of TeaD was solved in complex with ATP to a resolution of 1.9 A ° by molecular replacement. TeaD forms a dimer-dimer complex with one ATP molecule bound to each monomer, which has a Rossmann-like R/β overall fold. Our results reveal an ATP-dependent oligomerization of TeaD, which might have a functional role in the regulatory mechanism of TeaD. USP-encoding orfs, which are located adjacent to genes Encoding for TeaABC homologues, could be identified in several other organisms, and their physiological role in balancing the internal cellular ectoine pool is discussed.
Numerous membrane importers rely on accessory water-soluble proteins to capture their substrates. These substrate-binding Proteins (SBP) have a strong affinity for their ligands; yet, Substrate release onto the low-affinity membrane transporter must occur for uptake to proceed. It is generally accepted that release is facilitated by the association of SBP and transporter, upon which the SBP adopts a conformation similar to the unliganded state, whose affinity is sufficiently reduced. Despite the appeal of this mechanism, however, direct supporting evidence is lacking. Here, we use experimental and theoretical methods to demonstrate that an allosteric mechanism of enhanced substrate release is indeed plausible.
First, we report the atomic-resolution structure of APO TeaA, the SBP of the Na!-coupled ectoine TRAP transporter TeaBC from Halomonas elongata DSM2581T, and compare it with the substrate-bound structure previously reported. Conformational freeenergy landscape calculations based upon molecular Dynamics simulations are then used to dissect the mechanism that couples ectoine binding to structural change in TeaA. These insights allow us to design a triple mutation that biases TeaA toward apo-like conformations without directly perturbing the binding cleft, thus mimicking the influence of the membrane transporter. Calorimetric measurements demonstrate that the ectoine affinity of the conformationally biased triple mutant is 100-fold weaker than that of the wild type. By contrast, a control mutant predicted to be conformationally unbiased displays wild-type affinity. This work thus demonstrates that substrate release from SBPs onto their Membrane transporters can be facilitated by the latter through a mechanism of allosteric modulation of the former.
Compared to the designated European upper reference level of 300 Bq/m³ for indoor radon concentrations, the contribution of building materials appears to be low. Taking into account the recommended limit of 100 Bq/m³ by WHO as well as the increased dose conversion factor, the contribution of building products is quite relevant, especially at low air change rates. Therefore in Germany a maximum contribution of building materials to the indoor radon concentration of 20 Bq/m³ is discussed.
Because measurements of low concentrations are associated with high uncertainties, radon exhalation rates are often determined in chambers without air exchange and indoor conditions are extrapolated.
This study investigated the suitability of direct low level radon measurement under simulated indoor conditions with commercially available instruments, based on the preliminary EU standard for the determination of the emission of volatile organic compounds (VOC) from building materials in test chambers.
Measurements are possible with a relative uncertainty ranging from 7 to 18%. Four major problems were identified:
1. Detector sensitivity: Two of four instruments were identified to determine low radon concentrations in a sufficiently short measuring time.
2. Thoron discrimination: Thoron was discriminated by aging the sampled air in a hose before the detector.
3. Sampling setup: An external chamber measurement was feasible as long as all main system parts were under slight overpressure.
4. Blank value: For VOC-emission testing ambient air, conditioned by filtration and sorption, is used to generate an air exchange. Regarding radon, this treatment is non-effective. If all instrument background levels have been characterized, the blank value must be measured with a second detector in parallel.
Compared to the designated European upper reference level of 300 Bq m-3 for indoor radon concentrations, the contribution of building materials appears to be low. Taking into account the recommended limit of 100 Bq m-3 by WHO as well as the increased dose conversion factor, the contribution of building products is quite relevant, especially at low air change rates. Therefore in Germany a maximum contribution of building materials to the indoor radon concentration of 20 Bq m-3 is discussed.
Because measurements of low concentrations are associated with high uncertainties, radon exhalation rates are often determined in chambers without air exchange and indoor conditions are extrapolated.
This study investigated the suitability of direct low level radon measurement under simulated indoor conditions with commercially available instruments, based on the preliminary EU standard for the determination of the emission of volatile organic compounds (VOC) from building materials in test chambers.
Measurements are possible with a relative uncertainty ranging from 7 to 18 %. Four major problems were identified:
1. Detector sensitivity: Two of four instruments were identified to determine low radon concentrations in a sufficiently short measuring time.
2. Thoron discrimination: Thoron was discriminated by aging the sampled air in a hose before the detector.
3. Sampling setup: An external chamber measurement was feasible as long as all main system parts were under slight overpressure.
4. Blank value: For VOC-emission testing ambient air, conditioned by filtration and sorption, is used to generate an air exchange. Regarding radon, this treatment is non-effective. If all instrument background levels have been characterized, the blank value must be measured with a second detector in parallel.
Sewage sludge ashes (SSA) contain up to 13% P and are thus promising raw materials for fertilizer production. However, SSAs also contain heavy metals and the main P-bearing mineral phases whitlockite and aluminium phosphate are poorly bioavailable. We developed and patented a process that produces fertilizers from SSA addressing the above mentioned challenges. SSA is thermo-chemically treated at ~950°C under reducing conditions (reductive: dry sewage sludge) in a rotary kiln together with an alkali compound such as sodium or potassium sulfate, hydroxide or carbonate. Some undesired trace elements such as As, Hg, Pb and Cd are evaporated and separated via off gas treatment system. The poorly soluble phosphates are transformed into calcium alkali phosphates (CaNaPO4 or CaKPO4) that are not water soluble but completely soluble in neutral ammonium citrate solution (NAC). Pot experiments showed that the fertilizer performance of the treated SSA containing calcium alkali phosphates as the single P-bearing mineral phase was comparable to the performance of triple superphosphate. The PNAC-solubility of fertilizer products correlated very well with the resulting contents of calcium alkali phosphates and the P-uptake of plants in pot experiments. The effect of the ratio alkali/P on the PNAC-solubility was investigated by crucible experiments and trial series with a medium scale rotary kiln using different SSAs and alkali phosphates. The effects of operational parameters such as the temperature and the retention time were investigated as well as concurring side reactions of the alkali compounds e.g. with SiO2 present in SSA. The alkali/P ratio must be roughly adjusted at 2 to achieve 100% PNAC-solubility for a common type of SSA. A demonstration trial with an output of 2 t recycling fertilizer was carried out in an industrial rotary kiln (product output 30 kg/h). The PNAC-solubility of the product varied between 60% and 80% during the 4 days campaign showing that the transformation of the mineral P-phases to calcium alkali phosphates was not complete. This was observed although the amount of Na2SO4 additive was dosed according to the results of the pre-investigations. Structure analysis by XRD showed that besides the target compound CaNaSO4 also some Ca3(PO4)2 remained in the SSA as well as some unreacted Na2SO4 additive. Obviously, the conditions in the industrial rotary kiln were not optimal for the process showing that some process aspects have to be reconsidered for the scale-up.
Pot experiments are often performed to analyze the plant-availability of phosphorus (P) in P-fertilizers. However, these experiments do not determine the P compounds present in the soil which are responsible for the yield increase. In order to better understand the results of pot experiments we analyzed the soils by P K-edge X-ray absorption near-edge structure (XANES) spectroscopy to determine the P species and unravel transformation processes. We carried out pot experiments with maize testing different waste water derived recycling P-fertilizers on an acidic and a neutral soil. Soils samples before sowing and after harvest were collected and prepared for analysis. A combination of macro- and µ-XANES spectroscopy was used to determine the chemical state of the overall soil P and to identify P compounds in P-rich spots localized by micro-X-ray fluorescence (µ-XRF). P K-edge macro-XANES spectroscopy detected organic P and/or P sorbed onto organic matter or other substrates in the unfertilized and fertilized soils. In addition, µ-XRF mapping in combination with P K-edge µ-XANES spectroscopy evidenced that some P phases present in recycling P-fertilizers (magnesium phosphate and calcium sodium phosphate) react with co-fertilized ammonium nitrate and form highly plant-available ammonium phosphates in the soil. In opposite, apatites were not affected by the presence of ammonium. Thus, for a boost of the plant-availability of P in recycling P-fertilizers these fertilizers should be directly co-fertilized with nitrogen (N) sources that contain a high amount of ammonium instead of nitrate. Possibly, a specific preparation of NP-fertilizers by granulation of recycling P-fertilizers with ammonium compounds and a nitrification inhibitor could enhance the plant-availability of the produced fertilizer whereby they become more competitive to commercially available NP-fertilizers based on phosphate rock.
Sub-aerial biofilms (SAB) are ubiquitous, self-sufficient microbial ecosystems found on mineral surfaces at all altitudes and latitudes. SABs, which are the principal causes of weathering on exposed terrestrial surfaces, are characterized by patchy growth dominated by associations of algae, cyanobacteria, fungi and heterotrophic bacteria. A recently developed in vitro system to study colonization of rocks exposed to air included two key SAB participants - the rock-inhabiting ascomycete Knufia petricola (CBS 123872) and the phototrophic cyanobacterium Nostoc punctiforme ATCC29133. Both partners are genetically tractable and we used them here to study weathering of granite, K-feldspar and plagioclase. Small fragments of the various rocks or minerals (1–6 mm) were packed into flow-through columns and incubated with 0.1% glucose and 10 μM thiamine-hydrochloride (90 μL min−1) to compare weathering with and without biofilms. Dissolution of the minerals was followed by: (i) analysing the degradation products in the effluent from the columns via Inductively Coupled Plasma Spectroscopy and (ii) by studying polished sections of the incubated mineral fragments/grains using scanning electron microscopy, transmission electron microscopy and energy dispersive X-ray analyses. K. petricola/N. punctiforme stimulated release of Ca, Na, Mg and Mn. Analyses of the polished sections confirmed depletion of Ca, Na and K near the surface of the fragments. The abrupt decrease in Ca concentration observed in peripheral areas of plagioclase fragments favored a dissolution-reprecipitation mechanism. Percolation columns in combination with a model biofilm can thus be used to study weathering in closed systems. Columns can easily be filled with different minerals and biofilms, the effluent as well as grains can be collected after long-term exposure under axenic conditions and easily analyzed.
The worldwide produced plastic amount was about 314 m tones in 2013. A content of about 5-12 m tones of plastic products is estimated to attain to the environment. There, they are exposed to environmental aging conditions like UV light, abrasion, water, oxidation etc. and degrade to small particles. If the particles reach a dimension < 5 mm they are called microplastic. Today microplastic is almost ubiquitary and was found in the aquatic as well as in the terrestrial environment. The main representatives are polyethylene (PE), polypropylene (PP), polystyrene (PS) and polyethylene terephthalat (PET).
Analyzing microplastics in environmental samples turned out to be very challenging, due to the fact that there are only a few synthetic particles beside a huge number of natural. Furthermore, the different polymers particles vary in their shape, their density and their chemical characteristics. Until now, there is no standard procedure for sampling, concentration and analyzing. We developed a thermal decomposition method for analyzing micro plastics in environmental samples. The method is a combination of a thermal extraction on solid-phase adsorption agents with a subsequent analysis of the decomposition products by thermal desorption gas chromatography mass spectrometry. In contrast to more established methods, such as IR or Ramen spectroscopy, our method enables measurements within few hours and gives an integration result of polymer specific decomposition products. Therefore, it is possible to identify and to quantify polymers in environmental matrices.
The use of the method is demonstrated for various polymers (PE, PP, PS, PET) in spiked and first time also in real environmental samples.
Small grain sizes of municipal solid waste incineration (MSWI) bottom ash (BA) contain elemental and chemically bonded metals in appreciable amounts, especially copper. As different copper species have in general a higher density compared to the prevalent minerals, processes for density separation seemed to be favorable for the recovery of copper. Investigations with a centrifugal classifier were therefore carried out with BA from MWSI which have been used for a few years as the covering material for a landfill. The results show an appreciable enrichment of the precious copper. The concentrates contained up to 60 mg/kg copper in the dry weight (DW) (in general about 30 – 40 mg/kg DW) with enrichment factors of around 20 and a copper recovery of up to 50 % (in general around 20 %). A test series in order to evaluate the potential benefit for sequential processing illustrate the low efficiency for a further processing of the tailings.
The widespread use of antibiotics in livestock farming leads to trace residues in food products and wastewater, potentially entailing antimicrobial resistance in food-borne pathogens. The determination of antibiotics in aqueous environments and foodstuff is thus of major concern.
Analytical assays based on molecularly imprinted polymers (MIPs) have emerged as a valuable tool in this field due to the low production costs, stability, format adaptability and the possibility to imprint and thus their ability to recognize a wide variety of target analytes. With regard to optical sensing technologies, however, MIPs have only been used in considerably few applications, especially in fluorescence sensors. This limitation is basically due to the fact that the incorporation of a fluorescently responding moiety into a polymer matrix is challenging. One way to overcome this limitation is to use tailor-made fluorescent indicator monomers for direct transfer of the binding event into an optical signal. If such a monomer is integrated into a thin MIP-shell on microspheres such core/shell particles can be readily used in advanced multiplexing sensory fiber-optic microarrays.
Here, we propose such a fiber-optic microarray based on fluorescent MIP microspheres for antibiotics. The binding behavior and the selectivity of a microarray using these MIP were examined and compared with a non-imprinted polymer (NIP) control, employing the target molecules and other structurally closely related antibiotics.
Reactive geomembranes and geotextiles are an innovative approach to control the migration of contaminants in geotechnical applications. Within a joint research project in cooperation with a medium-sized enterprise, the preparation and characterization of “reactive” geomembranes and geotextiles modified by the addition of zero-valent metal nanoparticles was performed. Zero-valent iron (ZVI) nanoparticles were added to polyethylene or to the fillings of geo-containers or geosynthetic clay liners. These geosynthetic products consist of mixtures of sand with clay or bentonite, typically embedded in geotextile nonwovens or geomats. The permeability of these geo-containers can be adjusted by the ratio of clay or bentonite to sand. ZVI nanoparticles were also added as reactive material to geomembranes made of polyethylene with additives like the antioxidant Irganox 1010 or glycerin. These additives prohibit oxidation of the nanoparticle and act as hydrogen donor in the dechlorination of chlorinated hydrocarbons. Contaminates such as chlorinated hydrocarbons and toxic heavy metal compounds are either decomposed or converted to less toxic species (e.g. Cr-(VI) reduction to Cr-(III)). The paper reports the first experimental results from manufacturing of the reactive geomembrane model materials and characterization of the products with microscopic techniques. First breakthrough measurements of the ZVI modified geomembrane compared to a reference sample are presented.
Advanced oxidation processes have become an important part of research due to their capacity to degrade many environmental pollutants during water treatment. Especially the heterogeneous photocatalysis is a promising method because it often results in a full mineralization of many hazardous compounds. Incomplete degradation reactions can result in transformation products due to oxidative conditions. The transformation products may have a higher toxicity than the precursor substances and are often only partly removed during water treatment. Since a lot of these compounds are still unknown, transformation products are not detected by target analysis used in sewage treatment plants and are often released into the aquatic ecosystems. Therefore, extensive and effective non-target analytical methods are necessary for the monitoring and identification of the transformation products which can be generated during waste water treatment.
Titanium dioxide (TiO2) is the most frequently used photocatalyst because of its inexpensiveness, non-toxicity, chemical stability and its high photocatalytic activity. If TiO2 is irradiated electron-hole pairs are generated on the surface of the TiO2, resulting in the formation of active oxidized species such as hydroxyl radicals which can react with environmental pollutants.
A model system has been developed to simulate photocatalytic reactions in a laboratory scale. The commonly used pharmaceuticals metformin and gabapentin were selected as model substances because of their high input in waste water and the little information about their fate during water treatment. Metformin is the drug of choice for treating type 2 diabetes. More than half of the total amount of pharmaceuticals in the environment are the antidiabetic agent metformin and its major transformation product guanylurea. Gabapentin is used as antiepileptic drug and for the treatment of neuropathic pain. It is found in waste water influent in the high ng/L range.
First results of the optimization of the photocatalyst and its application are shown.
The recent experience of Italian seismic events provided wide observational information about typical behaviour, damage patterns and intrinsic vulnerability of monumental buildings. Evidence indicates that historical constructions are by far the most vulnerable from the seismic point of view. As a consequence, they demand for the definition of urgent strategies for the protection of cultural heritage from seismic hazard. The main goal of an in-depth knowledge of the structure should help to avoid inadequate, unsuitable or dangerous rehabilitation operations, as well as to select non-invasive and reversible techniques for the best exploitation of material and technology features. The definition of reliable models and methods for seismic risk assessment of historical constructions is today a very important topic. Typical problems of masonry structures concern aspects like inherent structural lacks, material degradation, geotechnical problems, buckling behaviour of slender elements and dynamic loading vulnerability. Modelling the mechanical behaviour of masonry may play an important role, due to both inherent material complexity and great scatter in mechanical properties. Effective procedures for the identification of the structural parameters from static and dynamic testing are thus required. In particular, dynamic measurements may be very useful for the identification of mechanical properties and soil restraints and, consequently, for the calibration of advanced numerical finite element models. The paper addresses two case studies of structural monitoring and seismic assessment of medieval masonry towers in Italy: the bell tower of Aversa and the bell tower of Capua. These monuments, placed in the Campania region, were monitored by means of full-scale environmental vibration testing. Measured responses are then used for modal identification with a typical finite element model updating technique based on vibration test results. Parameters optimization is carried out on the basis of a criterion which minimises a weighted error on modal properties. A satisfactory improvement in the determination of modal parameters is thus obtained, resulting in a close agreement between the modal properties observed in dynamic tests and those calculated from numerical model. Seismic assessment is finally performed based on nonlinear static analysis of the tower under multimodal distributions of lateral loads. Results from nonlinear analysis indicate the potential collapse mechanisms and evidence dangerous structural weakness which may play a role in the seismic vulnerability of the towers.