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Pollen represent one major cause for human allergic diseases. Currently the characterization and identification of pollen is time-consuming since it mainly relies on the microscopic determination of the genus-specific pollen morphology. A variety of new analytical approaches, like Raman - and fluorescence spectroscopy have been proposed in order to develop fast and reliable pollen identification. Recently matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) was initially applied for the rapid investigation of such complex biological samples. Taxonomic differences and relations of single pollen grains could be identified.
Both commercially available lyophilized pollen and fresh pollen acquired from biological samples collected in parks and in the Botanical Garden Berlin in the years 2013-2015 were investigated. The samples were prepared by formic acid extraction in the gas phase and spotted with HCCA matrix. A variety of new approaches, like a newly developed MALDI target with micrometer sample spots sizes, were tested for their suitability. The obtained mass spectral data were investigated by principal component analysis (PCA).
The applicability of MALDI-TOF mass spectrometry for the classification of pollen according to their taxonomic relationships was proven. Specifically, chemical differences in the mass spectra at the levels of plant order, genus and in many cases even of species could be identified. Based on these results, further investigations have been undertaken to optimize the sample preparation for the classification of single pollen grains in mixtures of pollens. A novel MALDI-target design was developed to enhance the phenotypic information of pollens in their mass spectra. The combination of mass spectral patterns and multivariate statistics provide a powerful tool for the investigation of structural correlations within mixtures. The results can be used to improve the reconstruction of taxonomic relations of single species in various mixtures and might be useful for the development of a fast routine method to identify pollen based on mass spectrometry.
Matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) is a well-implemented analytical technique for the investigation of complex biological samples. In MS, the sample preparation strategy is decisive for the success of the measurements. Here, sample preparation processes and target materials for the investigation of different pollen grains are compared. A reduced and optimized sample preparation process prior to MALDI-TOF measurement is presented using conductive carbon tape as target. The application of conductive tape yields in enhanced absolute signal intensities and mass spectral pattern information, which leads to a clear separation in subsequent pattern analysis
Anemophilous plants produce pollen grains, which have to be monitored to provide an information network for persons suffering from an allergy. The current conventional characterization and identification of pollen is performed by time-consuming microscopic examinations on the basis of the genus-specific pollen shape and size. These examinations are in need of proficient researchers, are not statistically validated, and additionally rely on relatively inaccurate observations of the pollination process. A variety of new analytical approaches have been proposed in order to develop a fast and reliable pollen identification using specific molecular information. Recently, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) was initially applied for the rapid investigation of such complex biological samples. The combination of the obtained patterns of pollen mass spectra and multivariate statistics provide a powerful tool for identifying taxonomic relationships. Here promising results obtained by the reduction and optimization of sample preparation prior to MALDI-TOF MS mapping are presented. Based on a novel application of conductive carbon tape as target, the signal information of the species-specific mass peak patterns of pollen was enhanced. This leads to a clear separation in a subsequent pattern analysis, which is important when analyzing pollen grains in natural species mixtures. As a proof-of-concept, artificial pollen mixtures were investigated by MALDI imaging and evaluated by innovative multivariate data analysis strategies, to assign individual pollen species in the mixtures. Our results can be used to improve the taxonomic differentiation and identification of pollen species and might be useful for the development of a routine method to identify pollen based on mass spectrometry.
Matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) is a well-implemented analytical technique for the investigation of complex biological samples. In MS, the sample preparation strategy is decisive for the success of the measurements. Here, sample preparation processes and target materials for the investigation of different pollen grains are compared. A reduced and optimized sample preparation process prior to MALDI-TOF measurement is presented using conductive carbon tape as target. The application of conductive tape yields in enhanced absolute signal intensities and mass spectral pattern information, which leads to a clear separation in subsequent pattern analysis. The results will be used to improve the taxonomic differentiation and identification, and might be useful for the development of a simple routine method to identify pollen based on mass spectrometry.
Anemophilous plants produce pollen grains, which have to be monitored to provide a national information network for persons suffering from an allergy. The current conventional characterization and identification of pollen is performed by time-consuming microscopic examinations based on the genus-specific pollen shape and size. These examinations need proficient researchers, are not statistically validated, and additionally rely on relatively inaccurate observations of the pollination process.
A variety of spectroscopic and spectrometric approaches have been proposed to develop a fast and reliable pollen identification using specific molecular information. Amongst them, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) was recently applied for the rapid investigation of such complex biological samples. The combination of obtained peak patterns from pollen mass spectra and multivariate statistic provide a powerful tool for identifying taxonomic relationships. A novel application based on the use of conductive carbon tape as MALDI target simplified the sample preparation and yielded enhanced the quality of the mass spectra. This led to a sufficient statistical analysis of the MS pattern, which is important when identify pollen grains in natural species mixtures.
Based on this approach, promising results could be obtained by MALDI-TOF MS imaging (MSI) of artificial pollen mixtures followed by multivariate analysis. Of special interest is here the determination of the detection limit (number of pollen grains). Therefore, different pollen grain compositions were investigated for quantitative profiling of each individual pollen species within these complex mixtures. Our results can be used to improve the taxonomic differentiation and identification of pollen species and might be useful for the development of a routine method to identify pollen based on imaging mass spectrometry.
Anemophilous plants produce pollen grains, which promote allergies. Therefore, pollen are monitored to provide a national information network. Their conventional identification and differentiation is performed by time-consuming microscopic examinations based on the genus-specific pollen morphology. A variety of spectroscopic and spectrometric approaches have been proposed to develop a fast and reliable pollen identification using specific molecular information. Amongst them, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) showed a high potential for the successful investigation of such complex biological samples. Specifically, it was illustrated that MALDI-MS imaging provides a powerful tool to identify pollen grains in pollen mixtures on the basis of ion intensity plots. More recently, the evaluation of the obtained peak patterns from pollen mass spectra with multivariate statistics enables a consistent and rapid identification of the taxonomic relationships. A novel application using conductive tape on the MALDI target simplifies sample preparation and enhanced the quality of the mass spectra. This led to a comprehensive analysis of the MS patterns, which is important when identifying pollen grains from different plant species in mixtures.
Here, we present further developments in MALDI-MS imaging of mixtures of pollen from different plant species. By combining conductive tape sample preparation with MALDI MSI and chemometric analysis, first promising results were obtained. In addition, we discuss the ability of partial least square regression (PLS-R) to identify pollen species based on independent reference spectra and present first results obtained with artificial pollen mixtures. These methods will be used in future online identification of pollen species in natural pollen mixtures.
About one in seven German citizens is suffering from respiratory allergies, which are mainly caused by anemophilous plant pollen. These pollen grains are monitored to provide a national information network. Their conventional identification is performed by time-consuming microscopic examinations based on the genus-specific pollen morphology. A variety of spectroscopic and spectrometric approaches have been proposed to develop a fast and reliable pollen identification using specific molecular information. Amongst them, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) showed a high potential for the successful investigation of such complex biological samples. The evaluation of the obtained peak patterns from pollen mass spectra with multivariate statistics enables a consistent and rapid identification of the taxonomic relationships.
Matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) is a well-implemented analytical technique for the investigation of complex biological samples. In MS, the sample preparation strategy is decisive for the success of the measurements. Here, sample preparation processes and target materials for the investigation of different pollen grains are compared. A reduced and optimized sample preparation process prior to MALDI-TOF measurement is presented using conductive carbon tape as target. The application of conductive tape yields in enhanced absolute signal intensities and mass spectral pattern information, which leads to a clear separation in subsequent pattern analysis. The results will be used to improve the taxonomic differentiation and identification, and might be useful for the development of a simple routine method to identify pollen based on mass spectrometry.
1. Fourier transform infrar ed (FTIR) spectroscopy enables chemical analysis of pollen samples for plant phenotyping to stud y plant–environment interactions, such as influence of climate change or pathogens. However, current approach, such as microspectrosc opy and attenuated total refle ction spectrosco py, doe s not allow fo r high-throughput protocols. This st udy at hand suggests a new sp ectroscopic method for high-throughp ut characterization of pollen.
2. Samples were measured as thin films of pollen fragments using a Bruker FTIR spe ctrometer with a high-throughput eXTension (HTS-XT) unit employing 384-well plates. In total, 146 pollen samples, belonging to 31 different pollen species of Fagaceae and Betulaceae and collected during three consecutive years (2012–2014) at locations in Croatia, Germany and Norway, were analysed. Critical steps in the sample preparation and measurement, such as variabilities between technical replicates, between microplates and between spectrometers, were studied.
3. Measurement variations due to sample preparation, microplate holders and instrumentation were low, and thus allowed differentiation of samples with respect to phylogeny and biogeography. The spectral variability for a ran ge of Fagales spec ies (Fagus, Quercus, Betula, Corylus, Alnus and Ostrya) showed high-species-specific differences in pollen’s chemical composition due to eithe r location or year. Statistically significant inter-annual and locational differences in the pollen spectra indicate that pollen chemical composition has high phenotypic plasticity and is influenced by local climate conditions. The variations in composition are connected to lipids, proteins, carbohydrates and sporopollenins that play crucial ro les in cold and desiccation tolerance, protection against UV radiation and as material and energy reserves.
4. The results of this study demonstrate the value of high-throughput FTIR approach for the systematic collection of data on ecosystems. The novel FTIR approach offers fast, reliable and economical screening of large number of samples by semi-automated methodology. The high-throughput approach could provide crucial understanding on plant–climate interactions with respect to biochemical variation within genera, species and populations.
The allergenic potential of airborne proteins may be enhanced via post-translational modification induced by air pollutants like ozone (O3) and nitrogen dioxide (NO2). The molecular mechanisms and kinetics of the chemical modifications that enhance the allergenicity of proteins, however, are still not fully understood. Here, protein tyrosine nitration and oligomerization upon simultaneous exposure of O3 and NO2 were studied in coated-wall flow-tube and bulk solution experiments under varying atmospherically relevant conditions (5–200 ppb O3, 5–200 ppb NO2, 45–96% RH), using bovine serum albumin as a model protein. Generally, more tyrosine residues were found to react via the nitration pathway than via the oligomerization pathway. Depending on reaction conditions, oligomer mass fractions and nitration degrees were in the ranges of 2.5–25% and 0.5–7%, respectively. The experimental results were well reproduced by the kinetic multilayer model of aerosol surface and bulk chemistry (KM-SUB). The extent of nitration and oligomerization strongly depends on relative humidity (RH) due to moisture-induced phase transition of proteins, highlighting the importance of cloud processing conditions for accelerated protein chemistry. Dimeric and nitrated species were major products in the liquid phase, while protein oligomerization was observed to a greater extent for the solid and semi-solid phase states of proteins. Our results show that the rate of both processes was sensitive towards ambient ozone concentration but rather insensitive towards different NO2 levels. An increase of tropospheric ozone concentrations in the Anthropocene may thus promote pro-allergic protein modifications and contribute to the observed increase of allergies over the past decades.