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Unity in defence: honeybee workers exhibit conserved molecular responses to diverse pathogens
(2017)
Background: Organisms typically face infection by diverse pathogens, and hosts are thought to have developed specific responses to each type of pathogen they encounter. The advent of transcriptomics now makes it possible to test this hypothesis and compare host gene expression responses to multiple pathogens at a genome-wide scale. Here, we performed a meta-analysis of multiple published and new transcriptomes using a newly developed bioinformatics approach that filters genes based on their expression profile across datasets. Thereby, we identified common and unique molecular responses of a model host species, the honey bee (Apis mellifera), to its major pathogens and parasites: the Microsporidia Nosema apis and Nosema ceranae, RNA viruses, and the ectoparasitic mite Varroa destructor, which transmits viruses.
Results: We identified a common suite of genes and conserved molecular pathways that respond to all investigated pathogens, a result that suggests a commonality in response mechanisms to diverse pathogens. We found that genes differentially expressed after infection exhibit a higher evolutionary rate than non-differentially expressed genes. Using our new bioinformatics approach, we unveiled additional pathogen-specific responses of honey bees; we found that apoptosis appeared to be an important response following microsporidian infection, while genes from the immune signalling pathways, Toll and Imd, were differentially expressed after Varroa/virus infection. Finally, we applied our bioinformatics approach and generated a gene co-expression network to identify highly connected (hub) genes that may represent important mediators and regulators of anti-pathogen responses.
Conclusions: Our meta-analysis generated a comprehensive overview of the host metabolic and other biological processes that mediate interactions between insects and their pathogens. We identified key host genes and pathways that respond to phylogenetically diverse pathogens, representing an important source for future functional studies as well as offering new routes to identify or generate pathogen resilient honey bee stocks. The statistical and bioinformatics approaches that were developed for this study are broadly applicable to synthesize information across transcriptomic datasets. These approaches will likely have utility in addressing a variety of biological questions.
Stahlbetontragwerke sind eine wichtige Konstruktionsweise im Bauwesen und ein wachsendes Anwendungsfeld für die Zerstörungsfreie Prüfung (ZfP).
Zur Sicherung der Tragsicherheit, strukturellen Integrität, Bestimmung von Geometrien und zur Detektion konstruktiver Elemente wie z.B. Bewehrung, Verankerungen und Spannkanälen besitzen zerstörungsfreie Prüfverfahren in diesem Bereich inzwischen große Relevanz. Durch den bislang erreichten Fortschritt in der Forschung und Entwicklung haben moderne akustische und elektromagnetische Verfahren eine beachtliche Leistungsfähigkeit erreicht. Von Geräteherstellern sind diese in kommerziellen Produktserien umgesetzt worden und finden eine zunehmend breite Anwendung in der Praxis. In einigen anderen Anwendungsgebieten, in denen die ZfP bereits fester Bestandteil von Überwachungen ist, wie z.B. im Maschinenbau und insbesondere in der Kerntechnik und der Luftfahrt, existieren umfangreiche Qualitätssicherungssysteme für die konforme Anwendung und zuverlässige Einbeziehung der ZfP. Dem relativ jungen Entwicklungsstadium moderner ZfP für Stahlbetonbauteile entsprechend müssen solche Konzepte im Bauwesen erst noch entwickelt bzw. implementiert werden.
Dementsprechend hat sich der Unterausschuss Qualitätssicherung (UA- S) des Fachausschusses ZfP im Bauwesen (ZfPBau) die Definition und Verbesserung der Qualität von ZfP-Anwendungen sowie insbesondere die verfahrensunabhängige Standardisierung von Prüfprozeduren und statistische Absicherung der Prüfergebnisse zum Ziel gemacht.
Die aktuellen Arbeitsfelder beinhalten die Entwicklung praxisgerechter Konzepte für Prüfprozeduren und deren Erprobung in einem Ringversuch sowie die Konzeption von Testkörpern hinsichtlich unterschiedlicher Aspekte wie Parameterstudien, Validierung, Kalibrierung und Simulation. Dabei werden Ansätze anderer Branchen durchaus einbezogen, die Anpassung an die spezifischen Bedürfnisse und Gegebenheiten des Bauwesens wird jedoch als wesentlich angesehen und stellt somit eine wichtige Vorgabe dar.
Da die Tätigkeiten nicht auf einzelne Verfahren begrenzt sind, müssen generelle Vorgehensweisen entwickelt werden, die sich auf die jeweiligen Verfahren konkretisieren lassen. Der Vortrag gibt hierzu erste Einblicke in die Arbeit des Ausschusses.
Recently, non-destructive testing in civil engineering (NDT-CE), in particular of concrete components, has successfully mastered the leap from research to practice. Several methods have been established for field inspections to determine the concrete cover of reinforcement or to estimate the compressive strength as well as other parameters related to the concrete material. In addition, the application of non-destructive testing is indispensable, if information about the inner structure - such as the location of rebars and tendon ducts or the damage-related condition assessment to detect grouting defects, honeycombs, delamination, or corrosion - is required. Besides the selection of a suitable NDT method and an appropriate inspection system, the reliability of the results depends largely on the person who applies the non-destructive inspection technique and evaluates the inspection results. To ensure a high quality of non-destructive concrete evaluation as well as to keep the uncertainty caused by the inspection personnel to a minimum, structured, consistent, and regulated theoretical as well as practical training of inspection personnel is essential. To close this gap, the subcommittee of education and training (UA-A) within the committee for NDT-CE of the German Society for Non-Destructive Testing (DGZfP) has been reactivated in 2018 to establish uniform training standards for non-destructive concrete inspections in the long term. The subcommittee consists of scientists, practitioners, authorities, and clients. So far, the national standard DIN 4871 “Non-destructive testing - Qualification of NDT personnel in Civil Engineering (NDT-CE)” was developed. This standard considers the civil-industry-specifics, for example, that standards for NDT of concrete, as well as related product standards with a few exceptions, still do not exist at the moment. Within this presentation, the concept, the connection to ISO 9712 and other standards as well as an overview of the recently developed German standard DIN 4871 will be presented.
The process of ensuring reliability of NDT applications contains various aspects, such as determining the performance and probability of success, the uncertainty in measurement, the provision of clear and functional procedures and ensuring the correct application accordingly. Test specimens have become powerful elements in supporting many of these aspects. Within the committee for NDT in Civil Engineering (NDT-CE) of the German Society for Nondestructive Testing (DGZfP), the subcommittee on Quality Assurance (UA-QS) therefore addresses the design and the integration of test specimens in the quality assurance process. Depending on the specific purpose, the requirements on test specimens can vary significantly based on the defined simulated scenario. The most prominent purposes of test specimens might be seen in providing references for inspection systems in regard to function control, calibration and validation. Further aspects can be parametric studies, basic investigation of physical principles related to NDT or a simplified and therefore comprehensive demonstration of inspection concepts (e.g. for teaching purposes). The specific purpose of a test specimen dictates the requirements regarding its conception, including the exact design, the material or the fabrication accuracy and the conditioning. In the development of a general guideline by the UA-QS for application-specific procedures and their validation, the use of test specimens is addressed and specific concepts for the design of test specimens are made. This includes the analysis of the measurement process regarding any given application, deriving an adequate calibration approach for it and designing test specimens (calibration specimens) accordingly. Furthermore, it includes the validation of the procedure taking into account all conditions related to the specific application in the field. The validation requires a statistically sufficient number of trials. Thorough evaluation of each trial can only be established if the ground-truth is known. Therefore, test specimens providing a realistic but controlled simulation of the inspection problem are valuable and indispensable elements in the validation process. The requirement of being fully realistic will often not be possible to fulfill due to practical restrictions. Any aspect that cannot be included in the simulation realistically needs to be simulated conservatively. This again, requires a sufficient understanding of the inspection principle and technique to ensure conservativeness. Among other quality-assurance-related aspects, the UA-QS establishes concepts and guidelines regarding sound and efficient approaches for the specific purposes of test specimens. This subcommittee brings together representatives of different Groups along the entire value chain of NDT-CE, including researchers, practitioners, manufacturers and clients. They all work together in establishing a common understanding and level of quality assurance in the industry.
The field of non-destructive testing of civil structures (NDT-CE) has been continuously growing. Due to the complexity and diversity of civil constructions as well as the heterogeneity of concrete, specific standards or guidelines for the application of modern NDT-CE are still missing. The development of individual solutions is the current approach, which is just as challenging as it is common for NDT-CE.
With the increasing development and commercialization of NDT-CE technology, the group of practitioners is growing. To ensure a good level of quality in the industry, it appears necessary to establish adequate means.
Naturally, the performance of NDT-CE methods regarding a specific application is strongly dependent on choosing the most suitable inspection technique and applying it correctly, generally referred to as the inspection procedure in the field of NDT. There are well-defined guidelines regarding procedure documentation and handling in many fields of NDT (e.g. nuclear, aerospace or automotive) according to the high importance of procedures in assuring a successful and reliable application. For a long time, this has not always been the case with NDT-CE, which is still considered a unique discipline of NDT. Part of the reason for that might be the young development state of NDTCE, the heterogeneity of building materials like concrete, timber or masonry as a material and the diversity of civil structures. In consequence, NDT-CE procedure development is considered challenging.
Among other aspects, addressed in the subcommittee on Quality Assurance (UA-QS) within the committee for NDT-CE of the German Society for Nondestructive Testing (DGZfP), part of its work aims at establishing an adequate basis for NDT-CE procedure development. While some of the highly developed approaches from other industries are taken into consideration, they need to be analyzed regarding their suitability for NDT-CE and adapted accordingly. For a procedure to be as defined as possible, it needs to contain sufficient information, such as the scope and limitations regarding material, geometry and condition of the test object, inspection parameters, calibration, data acquisition, analysis criteria as well as requirements regarding the inspection personnel.
For a successful implementation in the field, it is important to define the specific procedure as precisely as possible. Despite the necessity of a great amount of information to be included, the procedure needs to be suitable for efficient field application.
The UA-QS is developing a guideline for NDT-CE procedures suitable for application in this field of NDT to ensure correct and reproducible application. To demonstrate and evaluate this concept, specific examples of procedures are also produced. In particular, the UA-QS has developed a procedure for the detection and positioning of tendon ducts using Ground Penetrating Radar (GPR). This procedure is tested regarding the practical applicability in a roundrobin on a defined type of reference test block.
Recently, non-destructive testing in civil engineering (NDT-CE), in particular of concrete components, has successfully mastered the leap from research to practice. Several methods have been established for field inspections to determine the concrete cover of reinforcement or to estimate the compressive strength as well as other parameters related to the concrete material. In addition, the application of nondestructive testing is indispensable, if information about the inner structure - such as the location of rebars and tendon ducts or the damage-related condition assessment to detect grouting defects, honeycombs, delamination, or corrosion - is required. Besides the selection of a suitable NDT method and an appropriate inspection system, the reliability of the results depends largely on the person who applies the non-destructive inspection technique and evaluates the inspection results. To ensure a high quality of non-destructive concrete evaluation as well as to keep the uncertainty caused by the inspection personnel to a minimum, structured, consistent and regulated theoretical as well as practical training of inspection personnel is essential. To close this gap, the subcommittee of education (UA-A) within the committee for NDT-CE of the German Society for Nondestructive Testing (DGZfP) has been reactivated in 2018 to establish uniform training standards for nondestructive concrete inspections in the long term. The subcommittee consists of scientists, practitioners, authorities, and clients. So far, the national standard DIN 4871 “Non-destructive testing - Qualification and Certification of NDT personnel in Civil Engineering (NDT-CE)” was developed and is currently under review. This standard considers the civil-industry-specifics, for example, that standards for NDT of concrete, as well as related product standards with a few exceptions, still do not exist at the moment. Within this presentation, the concept, the connection to ISO 9712 and other standards as well as an overview of the developed German standard DIN 4871 will be presented.
In the framework of the SARNET-2 WP5.1 the QUENCH-DEBRIS test was conducted as the 17th severe accident test using the QUENCH facility at KIT to investigate the formation and coolability of a prototypic debris bed. The test scenario was defined by pre-test calculations using the MELCOR code. This code was used also for post-test analysis. The test bundle with length of about 2 m contains the hafnium shroud tube and 12 heated peripheral rods with claddings made of hafnium. Hafnium was chosen because of its much higher melting temperature and the about one order of magnitude lower oxidation rate compared to zirconium. The claddings of the inner nine rods were made from Zry-4. They were filled with pre-fragmented zirconia pellets. The test started with an oxidation phase of 20 h at peek cladding temperature about 1800 K to reach complete oxidation of the Zry-4 claddings over a height of 500 mm. The temperatures expected from the pre-test simulation fitted well the experimentally observed evolution of the bundle conditions.
The possibly surviving inner Zry-4 claddings were destroyed by the application of an axial mechanical force resulting in material relocation and formation of a heterogeneous debris bed consisting of segmented pellets and larger cladding tube fragments at the grid spacer 2 (350 mm elevation) and in a smaller amount at grid spacer 3 (1050 mm elevation). The so destroyed bundle was quenched with 10 g/s water. The evaporation rate generally showed an increasing trend during the reflood, except at the time of water penetration through the debris bed at spacer 2 when stagnation was observed. All peripheral hafnium claddings survived the whole test. During the oxidation phase about 100 g hydrogen was released. The time dependence of the hydrogen release predicted in the pre-test calculations fits well the measured one. The post-test examinations comprise videoscope inspections, high energy X-ray-tomography and metallographic investigations of the debris bed.
Validation of non-destructive testing methods is necessary to create a common basis where different systems can be compared and their applications and limitations be identified. This can be achieved through comparing the measurements taken by several systems used for a common diagnostic purpose under practical but controlled testing conditions. Well-designed small and large laboratory or field specimens promise such conditions.
The special concrete specimen (LCS) at BAM was constructed for validation purposes, in particular, to be used for evaluating the performance of echo methods. The thickness of the specimen is varying and it contains carefully designed built-in faults, such as voids, honeycombs and tendon ducts with various degrees of grouting defects. Since the geometry and condition of the defects are known, it can be used to compare the performance of radar, ultrasonic, impact-echo. The research was conducted within the Research group FOR384, sponsored by the German Research Society DFG.