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The amine headgroup, NH2, in aminothiolate monolayers can often generate unexpectedly rich structures in its N K-edge X-ray photoelectron spectra (XPS) and near-edge X-ray absorption fine structure (NEXAFS) spectra that are difficult to assign. We have carried out density functional theory (DFT) calculations to study the XPS and NEXAFS of amine headgroup in four different aminothiolate monolayers, namely, aliphatic 11-aminoundecane-1-thiol (AUDT), aromatic 4-aminobenzenethiol (ABT), araliphatic 4-aminophenylbutane-1-thiol (APBT), and 3-(4''-amino-1,1':4',1''-terphenyl-4-yl)propane-1-thiol (ATPT), with the focus on structure changes caused by protonation, hydrogen bonding, and X-ray damaging. Spectra of all possible saturated and unsaturated species, as well as X-ray damage products, such as imine, nitrile, azo species, and cumulative double bonds, have been thoroughly examined. It is found that extra spectral structures observed in the experimental XPS spectra do not result from protonation but from the formation of a primary ammonium. The X-ray excitation can induce cross-linking between two neighboring molecules to form different complexes that contribute to the π* features in NEXAFS spectra.
Fe K-edge XANES measurements were performed to determine the oxidation state of iron in iron gall inks. These data are used to investigate the relationship between the Fe oxidation state and ink corrosion in historical manuscripts. The oxidation state is determined using the pre-edge based on a general variation trend that was derived from model compounds and validated here independently on a suite of samples with known oxidation state and Fe in octahedral coordination (i.e. similar to Fe in gall ink). As long as suitable references for the pure ferric and ferrous state of iron gall inks cannot be pointed out, the analysis of the pre-edge of the Fe K-edge represents the only way to acquire absolute values for the Fe oxidation state (Fe3+/Fetot) with spatial resolution for this usually non-crystalline compound. Fe3+/Fetot values for the ink samples vary between ca. 0.7 and 1.0. Spatially resolved analyses performed across ink strokes of various historical manuscripts as well as newly made samples did not reveal any systematic spatial dependence. On average, historical samples that were exposed to conservation treatments show a more oxidized state. However, the measurements demonstrate explicitly that the exposure to X-rays during the XANES acquisition affects the oxidation state of Fe in most iron gall inks.