Research Center of Biomedical Engineering - RCBE
Refine
Year of publication
Document Type
- Article (200)
- conference proceeding (article) (105)
- conference proceeding (presentation, abstract) (88)
- conference talk (47)
- Preprint (13)
- Part of a Book (10)
- Doctoral Thesis (6)
- Part of Periodical (6)
- conference proceeding (volume) (5)
- Other (5)
Is part of the Bibliography
- no (499)
Keywords
- Deep Learning (23)
- Diagnose (15)
- Künstliche Intelligenz (15)
- Simulation (14)
- Artificial Intelligence (13)
- Biomechanik (12)
- Maschinelles Lernen (12)
- Bildverarbeitung (11)
- Bildgebendes Verfahren (9)
- Biomechanics (9)
Institute
- Research Center of Biomedical Engineering - RCBE (499)
- Research Center of Health Sciences and Technology - RCHST (325)
- Fakultät Maschinenbau (303)
- Research Center for Artificial Intelligence - RCAI (236)
- Fakultät Informatik und Mathematik (178)
- Labor Biomechanik (LBM) (154)
- Labor Regensburg Medical Image Computing (ReMIC) (141)
- Labor Biofluidmechanik (45)
- Labor Innovation & Regulatory Affairs (IRA) (31)
- Labor eHealth (eH) (28)
Begutachtungsstatus
- peer-reviewed (248)
- begutachtet (18)
BACKGROUND
Autologous fat grafting is widely used in reconstructive, aesthetic and regenerative surgery and often requires repeated applications. Cryopreservation of lipoaspirate enables autologous fat banking and off-the-shelf availability; however, its clinical implementation is limited by freezing-induced tissue injury, regulatory requirements and uncertainties regarding the optimal preservation protocol. Glycerol is a biocompatible cryoprotective agent with promising preliminary data. Nevertheless, the optimal concentration for lipoaspirate cryopreservation remains unknown. The aim of this study was to determine the optimal glycerol concentration for preservation of adipose tissue processed according to the Cell-Enriched Lipotransfer (CELT) protocol in clinically relevant volumes under GMP-compatible conditions.
METHODS
Lipoaspirates from 10 patients were processed by centrifugation according to the CELT protocol and allocated into experimental groups: fresh unfrozen control, frozen samples without cryoprotectant, frozen samples with PBS, and frozen samples supplemented with glycerol in concentrations ranging from 10% to 60%. Samples were cryopreserved using a controlled freezing rate at a temperature of -80 °C for 24 h. Large-volume cryopreservation was additionally performed with the best concentration of glycerol. Post-thaw tissue quality was assessed by resazurin assay of whole tissue, stromal vascular fraction (SVF) cell live/dead counting, and resazurin assay after short-term cell culture.
RESULTS
Glycerol supplementation improved post-thaw tissue viability compared with cryopreservation without cryoprotectant or with PBS alone. An optimal concentration range between 10% and 30% glycerol was identified, with highest preservation of metabolic activity and surviving cell yield observed at 20%. Higher glycerol concentrations resulted in a marked decline in tissue quality. Cryopreservation in large volume was feasible and did not impair post-thaw viability compared with small-volume samples.
CONCLUSIONS
Glycerol-based cryopreservation allows effective and GMP-compatible preservation of human lipoaspirate. An optimal glycerol concentration range was identified, enabling large-volume fat banking without compromising tissue quality. This protocol provides a clinically applicable strategy for autologous fat storage and may facilitate repeated reconstructive and regenerative treatments.
Summary. The use of external fixation devices for the treatment of diaphyseal fractures of the tibia has become the standard. However, most external fixation device (EFD) modifications have insufficient stiffness. Therefore, there is a need to develop an EFD design that could provide early limb loading with an optimal range of interfragmentary motion. A related challenge lies in determining the strength of bone regeneration during fracture healing, which cannot be objectively assessed in a clinical setting. However, these values can be calculated using the Finite Element Method (FEM).
Objective. The objective of our work was to study the biomechanical behavior of the proposed “External Fixation Device – Tibia” system at the stages of bone regeneration under the condition of its loading by body weight using the FEM.
Material and Methods. A computer simulation was carried out, at the initial stage of which a semi-full-scale prototype of the “External Fixation Device – Tibia” bone fragments fixation system was developed. Based on it, the next step was to create solid 3D models of the tibia and the EFD using the SolidWorks software package (Dassault, France). The EFD design used in the work consisted of 4 semi-rings (160 mm), 9 connecting beams (150 mm), two through pins (5 mm), 2 spongiosis screws (5 mm), 2 cortical screws (5 mm), and 6 clamps. All the components of the EFD were made of AISI320 stainless steel.
Results and Discussion. Simulation computer modeling of the fixation capabilities of the proposed EFD showed that its stiffness is sufficient to provide a controlled load on the damaged limb within 20-24% of body weight from the first days of formation of granulation cartilage regenerate. It should be noted that the supporting function of the fibula is restored within 5-6 weeks after its fusion and is approximately 17-30% of the body weight. Therefore, in general, a controlled load on the limb can reach 50% of the body weight after 6 weeks of treatment. Subsequently, when mature bone tissue is formed around the fracture (most often within 8-17 weeks), the load on the limb can reach 130% of the body weight, which ensures the patient’s movement without additional support.
Conclusions. The performed computer simulation modeling makes it possible to determine the behavior of the biomechanical environment of the proposed “External Fixation Device – Bone” system and allows to establish the amouth of limb loading in the process of developing a scientifically based rehabilitation program to create optimal conditions for fracture healing. The proposed design of the EFD can be used for the final treatment of diaphyseal fractures of the tibia and provides for the possibility of early loading on the “External Fixation Device – Bone” system.
OBJECTIVE
Since the first use of silicone implants by Cronin in 1962, there have been several attempts to introduce alternative filling materials for breast implants on the market. A promising new development are lightweight implants, whose filler material is one third lighter than conventional silicone gel. While these implants have been used primarily for aesthetic augmentation, a benefit could be expected particularly in post-mastectomy reconstruction.
MATERIALS AND METHODS
Since 2019, 92 operations using lightweight implants have been performed at our clinic, 61 of them for breast reconstruction after mastectomy. These have been compared to 92 breast reconstructions using conventional silicone implants.
RESULTS
The average volume of the lightweight implants was 30% higher than of the conventional implants (452 ml resp. 347 ml), whereas the implant weight was comparable in both groups (317 g resp. 347 g). Grade 3-4 capsular fibrosis was seen in 6 cases in both groups; revision was required 9 times (lightweight implants) and 7 times (conventional silicone implants) during the follow-up period.
DISCUSSION
To our knowledge, this is the first study to investigate the use of lightweight implants in breast reconstruction. With exception of the filler material, the implants used in the two groups were comparable in shape and surface. The inserted lightweight implants had a greater volume but nearly the same weight as the conventional implants and were used in patients with a higher body mass index. Thus, lightweight implants were preferred in patients whose reconstruction required a larger implant volume.
CONCLUSION
Lightweight implants are a new alternative for breast reconstruction especially in case that larger implant volume is demanded. The increased complication rate has to be verified in further studies.
This work provides experimental data for validating numerical analyses of airflow in the upper human respiratory tract while consolidating nearly physiological conditions. For this purpose, flow patterns in the nasopharynx of a patient-specific geometry are analyzed using the volumetric approach of tomographic Particle Image Velocimetry. Ultimately, material models for the rheological behavior of physiological mucus are developed to consider wall conditions.
In dieser Arbeit wurden experimentelle Daten zur Validierung numerischer Analysen der Strömungssituation in den oberen menschlichen Atemwegen unter nahezu physiologischen Bedingungen erhoben. Es wurden die Strömungsmuster im Nasopharynx einer patientenspezifischen Geometrie mittels tomographischer Particle Image Velocimetry analysiert. Die mathematischen Modelle der rheologischen Eigenschaften des respiratorischen Mukus bilden die Möglichkeit zur Darstellung physiologischer Randbedingungen.
Manual processing of lipoaspirate can enhance stem cell concentration, thereby improving the take rate, which still represents a major challenge in autologous fat transfer. However, since the preparation consists of many manual steps that are difficult to standardize, we investigated the influence of residual tumescent solution on the macroscopic and microscopic outcome of the mechanically processed lipoaspirate. Additionally, we investigated whether sedimentation followed by vacuum filtration of the aqueous phase could accelerate processing by replacing the initial centrifugation step. Samples with more than 5% remaining aqueous phase show no clearly defined oil phase, preventing any volume reduction. In contrast, all centrifuged samples produced a clear oil phase. The remaining tissue, as confirmed by both histology and viability assays, was superior to nanofat. Although sedimentation and filtration in the LipoCollector did not sufficiently separate enough aqueous phase from the lipoaspirate, tissue viability was significantly higher compared to our control container. Our findings indicate that centrifugation remains essential for effective aqueous phase separation and further mechanical processing, while the automatic filtration may enhance processing efficiency. These results indicate that further work is needed to simplify mechanical processing, as the outcome can be significantly influenced by parameters such as tumescent impurities.
We present the design and results of the MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024, focusing on federated learning (FL) for glioma sub-region segmentation in multi-parametric MRI scans, and evaluating novel weight aggregation methods for increased robustness and efficiency. Participating methods from six teams are evaluated using a standardized FL setup and a multi-institutional dataset derived from the BraTS glioma benchmark—a dataset consisting of 1,251 training cases, 219 validation cases, and 570 hidden test cases, with segmentations of enhancing tumor (ET), tumor core (TC), and whole tumor (WT). Teams are ranked by a cumulative scoring system accounting for segmentation performance—measured by Dice Similarity Coefficient (DSC) and 95th percentile Hausdorff Distance (HD95)—and communication efficiency assessed through the convergence score. A PID-controller-based approach emerges as the top-performing method, achieving a mean DSC of 0.733, 0.761, and 0.751 for ET, TC, and WT, respectively, with corresponding HD95 values of 33.922mm, 33.623mm, and 32.309mm, while also being the most efficient with a convergence score of 0.764. These results contribute to ongoing advances in FL, building on top-performers from previous challenge iterations and surpassing them, highlighting PID controllers as powerful mechanisms for stabilizing and optimizing weight aggregation in FL. The challenge code is available at https://github.com/FeTS-AI/Challenge.
Aims
Systematic visualization of anatomical landmarks is critical to prevent "blind spots" during esophagogastroduodenoscopy (EGD), which are a primary cause of missed upper gastrointestinal cancers. Standardized documentation serves as a secondary but essential tool for quality assurance. We aimed to develop a deep learning approach for the automated classification of 28 anatomical categories, including a 22-segment mapping of the stomach based on the Japanese Systemic Stomach Screening (SSS) protocol. The primary goal was to provide a technical foundation for real-time monitoring of mucosal coverage to ensure examination completeness. Primary outcomes were macro F1-score and overall accuracy for this 28-class classification task.
Methods
We used a multi-center dataset of 9.012 endoscopic images from 1.553 patients, merging the public GastroHUN database (5.202 images; 385 patients) [1] and an internal dataset (3.810 images; 1.168 patients) from a European tertiary referral centre (Augsburg, Germany). All images were obtained during routine EGD using Olympus endoscopes and anonymized prior to analysis. Each image was labelled at image level into one of 28 anatomical classes: oropharynx, esophagus, esophagogastric junction, duodenal bulb, second part of the duodenum, papilla and 22 gastric segments based on the SSS classification using a consensus-based multi-annotator process (n=4). A trained and supervised specialist annotated additional data from Augsburg. To handle this complexity, we employed a Vision Transformer (ViT-L/14) foundation model pre-trained via DINO-v2. Instead of full-parameter fine-tuning, which risks overfitting on medical datasets, we implemented Low-Rank Adaptation (LoRA) [2]. By targeting only the Q- and V-projection layers in the final six transformer blocks, we reduced the trainable parameters to 312.000 (0.36% of the total model). Evaluation was performed using a strict patient-wise 5-fold cross-validation.
Results
The model achieved a mean macro F1-score of 0.88±0.01 and an overall accuracy of 0.88±0.01. Beyond robustly identifying major regions like the esophagus and duodenum, the model showed high precision in the more challenging differentiation of fine-grained SSS segments. The use of LoRA enabled stable training and strong generalization across the combined international and local datasets ([Abb. 1]).
Conclusions
Integrating transformer-based foundation models with LoRA-based fine-tuning allows for highly accurate UGIT anatomical mapping. An F1-score of 0.88 across 28 classes suggests that this approach is robust enough for automated documentation and real-time quality monitoring. Future work will focus on expanding the multi-center data volume and implementing expert consensus-labeling across all subsets to fürther refine model reliability, alongside developing a real-time visualization tool that provides an intuitive overview of the explored segments. To our knowledge, this is among the first studies to leverage a public endoscopy dataset together with institutional data for upper GI anatomical site classification.
Die zuverlässige endoskopische Einschätzung der Infiltrationstiefe bei Neoplasien des Barrett-Ösophagus (BO) ist entscheidend für die Therapieentscheidung zwischen organerhaltender endoskopischer Resektion und chirurgischer Resektion. Ziel dieser Studie ist die Entwicklung eines KIVision- Modells, das endoskopisch kurativ resezierbare Läsionen (LGD; HGD; T1a m1 –T1b sm1, L0, V0 und G1-2; EREAC) von nicht kurativ endoskopisch resezierbaren Läsionen (≥ T1b sm2 und/oder L1, V1, G3; NEREAC) anhand endoskopischer Bildgebung unterscheidet. In einer Pilotstudie mit 116 Patient:innen wurde bei der Unterscheidung von T1a vs. T1b mit 230 Bildern ein F1-Score, eine Sensitivität und Spezifität von 74%, 77% und 64% erreicht. [1]
Material und Methodik Es handelt sich um eine ambidirektionale multizentrische Studie mit insgesamt n=578 Patient:innen und n=651 Läsionen im Zeitraum Januar 2014 bis Juni 2025. Eingeschlossen wurden Patient:innen mit gesicherter BO-assoziierter Neoplasie anhand des histologischen Goldstandards durch a) endoskopische Submukosadissektion (ESD) oder b) chirurgische Resektion. Insgesamt wurden 526 Läsionen im Arm EREAC und 125 Läsionen der Gruppe im Arm NEREAC akquiriert. Es werden Bild- und Videodaten aus Olympus und Fuji-Endoskopen verwendet. Aus der Videodokumentation wurden Frames extrahiert und anhand eines vordefinierten Schemas annotiert (u.a. Lasionssichtbarkeit, virtuelle (NBI, TXI) und farbbasierte Chromoendoskopie, Zoommodus). Es erfolgte eine mehrstufige Annotation durch einen medizinischen Doktoranden (J.B.), mit 1:1 Supervision durch einen endoskopisch tätigen Facharzt im Bereich Gastroenterologie (D.R.), sowie durch einen Barrett-Experten (A.E). Aufgrund einer Klassenimbalance zugunsten der EREAC-Gruppe erfolgt zunachst eine Zwischenanalyse aus 185 Patient:innen mit 215 Läsionen mit a 500 Frames. Mittels ConvNeXt Tiny Architektur wurde eine 5-fache Cross-Validierung mit Split auf Patientenebene durchgeführt. Primare Leistungsmetriken sind F1-Score, Sensitivität und Spezifität.
Ergebnisse Im aktuellen Test erreichte das KI-Modell für die Klassifikation (EREAC vs. NEREAC) einen mittleren F1-Score von 78.3% (resektabel: 79.8%, nicht 2 resektabel: 76.8%). Die mittlere Sensitivität und Spezifität lag bei je 78.3%. Die klassenspezifische Sensitivität und Spezifität zur Erkennung von NEREAC lag bei 72.0% und 84.6%.
Zusammenfassung Ein KI-Assistenzmodell kann die endoskopische Einschatzung der Resektabilität von Barrett-Neoplasien unterstutzen, indem es die Infiltrationstiefe aus endoskopischer Bildgebung pradiziert. Klinisch besonders relevant ist die hohe Spezifität in der Erkennung nicht-resektabler Läsionen.
Nächste Schritte sind das weitere Training mit höherer Datenmenge, die adressierte Aufarbeitung der Klassenimbalance, externe Validierung sowie die Echtzeit-Implementation.
This data article describes the Surgical Procedure Phase, Keypoint, and Instrument Recognition (PhaKIR) dataset, a collection of eight complete laparoscopic cholecystectomy videos acquired during routine minimally invasive procedures at three German medical centers. The recordings were captured with different monocular endoscopic camera systems at 25 frames per second and a resolution of 1920 × 1080 pixels, with durations ranging from 28 to 58 minutes. Segments showing regions outside the abdominal cavity were removed for anonymization, and the corresponding cut indices are provided.
The dataset offers unified annotations for three interrelated tasks on the same complete surgical sequences: surgical phase recognition, annotated for every frame at 25 fps (485,875 frames), instrument keypoint estimation (19,435 frames), and instrument instance segmentation (19,435 frames), each annotated at one frame per second (every 25th frame). Surgical phases follow the seven-phase Cholec80 scheme, extended by an undefined label for transitional frames. The instrument annotations distinguish 19 instrument classes as well as individual instances of the same class, with keypoint annotations comprising two to four class-dependent points labeled with COCO-style visibility states. Segmentation and keypoint labels were created manually using the Computer Vision Annotation Tool (CVAT), whereas phase labels were derived from documented phase-transition timestamps, and all annotations underwent a multi-stage review by a medically trained team. The data are provided in open formats (MP4, CSV, JSON, PNG) together with a frame-extraction script under the CC BY-NC-SA license and are available through controlled access upon request via the Zenodo platform.
Because the dataset combines procedural context, instrument pose, and pixel-accurate instance segmentations within full-length recordings from multiple institutions, it can be reused for single-task or multi-task model development, for temporally aware approaches that exploit motion continuity, and for cross-institutional generalization protocols such as leave-one-hospital-out evaluation. The dataset served as the training resource for the PhaKIR Challenge at the Endoscopic Vision (EndoVis) Challenge at MICCAI 2024.
Background
Digital therapeutics (DTx) are patient-facing apps designed to support individuals in their daily lives. Therefore, they have the potential to revolutionize healthcare by empowering and engaging patients as active stakeholders in their own care. Despite the increasing adoption of DTx in national healthcare systems, research on their design remains limited.
Objective
The present research article introduces “DiGATax”, a taxonomy designed to categorize and analyze DTx, including perspectives on content, intervention delivery logic and technology, as well as the patient’s interface, consolidating and expanding upon prior taxonomic work.
Methods
The taxonomy was created through a multi-method approach, combining a systematic review of existing digital health taxonomies with a qualitative analysis of
n
= 44 evidence-based, permanently listed applications from the German DiGA directory. Additionally, a taxonomy-based cluster analysis was performed to identify archetypes in the current DTx landscape.
Results
The proposed taxonomy comprises 19 dimensions and 108 characteristics, enabling a systematic classification and discussion of existing applications. Cluster analysis identified three archetypes: personal goal-centered, gameful designed, and conversational-driven, with the latter dividing into two subtypes. Additional exploratory analyses examined the user interface as a potential factor associated with user acceptance and explored possible links between DTx design, health-related and engagement outcomes.
Conclusions
By offering new insights into DTx design, this study contributes towards more organized research and reporting, ultimately paving the way for the development of effective solutions. It also marks a further step towards Meta-DTx, which aim to align patient care for multimorbid patients under one umbrella.