TY - CHAP A1 - Peter, Kathrin A1 - Reinefeld, Alexander T1 - Consistency and fault tolerance for erasure-coded distributed storage systems T2 - Proceedings of the fifth international workshop on Data-Intensive Distributed Computing Date Y1 - 2012 UR - http://doi.acm.org/10.1145/2286996.2287002 U6 - https://doi.org/10.1145/2286996.2287002 SP - 23 EP - 32 PB - ACM CY - New York, NY, USA ER - TY - JOUR A1 - Enke, Harry A1 - Partl, Adrian A1 - Reinefeld, Alexander A1 - Schintke, Florian T1 - Handling Big Data in Astronomy and Astrophysics JF - Datenbank-Spektrum Y1 - 2012 UR - http://dx.doi.org/10.1007/s13222-012-0099-1 U6 - https://doi.org/10.1007/s13222-012-0099-1 VL - 12 IS - 3 SP - 173 EP - 181 PB - Springer-Verlag ER - TY - CHAP A1 - Döbbelin, Robert A1 - Schütt, Thorsten A1 - Reinefeld, Alexander T1 - An Analysis of SMP Memory Allocators T2 - Proceedings of the 41st International Conference on Parallel Processing Workshops (Fifth International Workshop on Parallel Programming Models and Systems Software for High-End Computing (P2S2)) Y1 - 2012 U6 - https://doi.org/10.1109/ICPPW.2012.10 SP - 48 EP - 54 PB - IEEE Computer Society ER - TY - CHAP A1 - Schütt, Thorsten A1 - Döbbelin, Robert A1 - Reinefeld, Alexander T1 - Forward Perimeter Search with Controlled Use of Memory T2 - International Joint Conference on Artificial Intelligence, IJCAI-13, Beijing Y1 - 2013 ER - TY - JOUR A1 - Schütt, Thorsten A1 - Reinefeld, Alexander A1 - Döbbelin, Robert T1 - MR-search: massively parallel heuristic search JF - Concurrency and Computation: Practice and Experience Y1 - 2011 U6 - https://doi.org/10.1002/cpe.1833 VL - 25 IS - 1 SP - 40 EP - 54 ER - TY - CHAP A1 - Stender, Jan A1 - Berlin, Michael A1 - Reinefeld, Alexander ED - Kyriazis, D. ED - Voulodimos, A. ED - Gogouvitis, S. ED - Varvarigou, Theodora A. T1 - XtreemFS – a File System for the Cloud T2 - Data Intensive Storage Services for Cloud Environments Y1 - 2013 UR - http://dx.doi.org/10.4018/978-1-4666-3934-8 U6 - https://doi.org/10.4018/978-1-4666-3934-8 PB - IGI Global ER - TY - GEN A1 - Scheffler, Daniel A1 - Sips, Mike A1 - Behling, Robert A1 - Dransch, Doris A1 - Eggert, Daniel A1 - Fajerski, Jan A1 - Freytag, Johann-Christoph A1 - Griffiths, Patrick A1 - Hollstein, André A1 - Hostert, Patrick A1 - Köthur, Patrick A1 - Peters, Mathias A1 - Pflugmacher, Dirk A1 - Rabe, Andreas A1 - Reinefeld, Alexander A1 - Schintke, Florian A1 - Segel, Karl T1 - GeoMultiSens – Scalable Multisensoral Analysis of Satellite Remote Sensing Data T2 - ESA Living Planet Symposium, EO Open Science Posters Y1 - 2016 ER - TY - CHAP A1 - Noack, Matthias A1 - Reinefeld, Alexander A1 - Kramer, Tobias A1 - Steinke, Thomas T1 - DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion T2 - 2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 19th IEEE Int. Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC 2018) N2 - Computing the Hierarchical Equations of Motion (HEOM) is by itself a challenging problem, and so is writing portable production code that runs efficiently on a variety of architectures while scaling from PCs to supercomputers. We combined both challenges to push the boundaries of simulating quantum systems, and to evaluate and improve methodologies for scientific software engineering. Our contributions are threefold: We present the first distributed memory implementation of the HEOM method (DM-HEOM), we describe an interdisciplinary development workflow, and we provide guidelines and experiences for designing distributed, performance-portable HPC applications with MPI-3, OpenCL and other state-of-the-art programming models. We evaluated the resulting code on multi- and many-core CPUs as well as GPUs, and demonstrate scalability on a Cray XC40 supercomputer for the PS I molecular light harvesting complex. Y1 - 2018 SN - 978-1-5386-5555-9 U6 - https://doi.org/10.1109/IPDPSW.2018.00149 N1 - Best Paper Award SP - 947 EP - 956 ER - TY - CHAP A1 - Scheffler, Daniel A1 - Sips, Mike A1 - Behling, Robert A1 - Dransch, Doris A1 - Eggert, Daniel A1 - Fajerski, Jan A1 - Freytag, Johann-Christoph A1 - Griffiths, Patrick A1 - Hollstein, André A1 - Hostert, Patrick A1 - Köthur, Patrick A1 - Peters, Mathias A1 - Pflugmacher, Dirk A1 - Rabe, Andreas A1 - Reinefeld, Alexander A1 - Schintke, Florian A1 - Segel, Karl T1 - Geomultisens – a common automatic processing and analysis system for multi-sensor satellite data T2 - Advancing Horizons for Land Cover Services Entering the Big Data Era, Second joint Workshop of the EARSeL Special Interest Group on Land Use & Land Cover and the NASA LCLUC Program Y1 - 2016 SP - 18 EP - 19 ER - TY - JOUR A1 - Kramer, Tobias A1 - Noack, Matthias A1 - Reinefeld, Alexander A1 - Rodríguez, Mirta A1 - Zelinskyi, Yaroslav T1 - Efficient calculation of open quantum system dynamics and time-resolved spectroscopy with Distributed Memory HEOM (DM-HEOM) JF - Journal of Computational Chemistry N2 - Time- and frequency resolved optical signals provide insights into the properties of light harvesting molecular complexes, including excitation energies, dipole strengths and orientations, as well as in the exciton energy flow through the complex. The hierarchical equations of motion (HEOM) provide a unifying theory, which allows one to study the combined effects of system-environment dissipation and non-Markovian memory without making restrictive assumptions about weak or strong couplings or separability of vibrational and electronic degrees of freedom. With increasing system size the exact solution of the open quantum system dynamics requires memory and compute resources beyond a single compute node. To overcome this barrier, we developed a scalable variant of HEOM. Our distributed memory HEOM, DM-HEOM, is a universal tool for open quantum system dynamics. It is used to accurately compute all experimentally accessible time- and frequency resolved processes in light harvesting molecular complexes with arbitrary system-environment couplings for a wide range of temperatures and complex sizes. Y1 - 2018 U6 - https://doi.org/doi:10.1002/jcc.25354 VL - 39 IS - 22 SP - 1779 EP - 1794 PB - Wiley Periodicals, Inc. ER -