TY - GEN A1 - Ilgenfritz, Ernst-Michael A1 - Kerler, Werner A1 - Müller-Preussker, Michael A1 - Sternbeck, Andre A1 - Stüben, Hinnerk T1 - Probing the Aoki phase with N_f=2 Wilson fermions at finite temperature N2 - In this letter we report on a numerical investigation of the Aoki phase in the case of finite temperature which continues our former study at zero temperature. We have performed simulations with Wilson fermions at $\beta=4.6$ using lattices with temporal extension $N_{\tau}=4$. In contrast to the zero temperature case, the existence of an Aoki phase can be confirmed for a small range in $\kappa$ at $\beta=4.6$, however, shifted slightly to lower $\kappa$. Despite fine-tuning $\kappa$ we could not separate the thermal transition line from the Aoki phase. T3 - ZIB-Report - 05-48 KW - Wilson fermions KW - phase diagram KW - parity-flavor symmetry KW - Aoki phase KW - finite temperature Y1 - 2005 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:0297-zib-8812 ER - TY - GEN A1 - Ilgenfritz, Ernst-Michael A1 - Kerler, Werner A1 - Müller-Preussker, Michael A1 - Sternbeck, André A1 - Stüben, Hinnerk T1 - A numerical reinvestigation of the Aoki phase with $N_f=2$ Wilson fermions at zero temperature N2 - We report on a numerical reinvestigation of the Aoki phase in lattice QCD with two flavors of Wilson fermions where the parity-flavor symmetry is spontaneously broken. For this purpose the Hybrid Monte Carlo algorithm was used and an explicit symmetry-breaking source term $h\bar{\psi} i \gamma_{5} \tau^{3}\psi$ was added to the Wilson fermion action. The order parameter $\langle\bar{\psi}i\gamma_{5}\tau^{3}\psi\rangle$ was studied at several values of $(\beta,\kappa,h)$ on lattices of sizes $4^4$ to $12^4$. Our largest lattices can be considered as infintely large allowing to extrapolate to $h=0$. The existence of a parity-flavor-breaking phase can be confirmed at $\beta=4.0$ and $\beta=4.3$ while we find no sign of parity-flavor-breaking at $\beta=4.6$ and $\beta=5.0$. T3 - ZIB-Report - 03-27 KW - Wilson fermions KW - phase diagram KW - parity-flavor symmetry KW - Aoki phase Y1 - 2003 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:0297-zib-7492 ER - TY - GEN A1 - Ilgenfritz, Ernst-Michael A1 - Kerler, Werner A1 - Müller-Preussker, Michael A1 - Stüben, Hinnerk T1 - Parallel tempering and decorrelation of topological charge in full QCD N2 - The improvement of simulations of QCD with dynamical Wilson fermions by combining the Hybrid Monte Carlo algorithm with parallel tempering is studied on $10^4$ and $12^4$ lattices. As an indicator for decorrelation the topological charge is used. T3 - ZIB-Report - 00-25 KW - QCD KW - parallel tempering KW - topological charge Y1 - 2000 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:0297-zib-5930 ER - TY - GEN A1 - Ilgenfritz, Ernst-Michael A1 - Kerler, Werner A1 - Müller-Preussker, Michael A1 - Stüben, Hinnerk T1 - Parallel tempering in full QCD with Wilson fermions N2 - We study the performance of QCD simulations with dynamical Wilson fermions by combining the Hybrid Monte Carlo algorithm with parallel tempering on $10^4$ and $12^4$ lattices. In order to compare tempered with standard simulations, covariance matrices between sub-ensembles have to be formulated and evaluated using the general properties of autocorrelations of the parallel tempering algorithm. We find that rendering the hopping parameter $\kappa$ dynamical does not lead to an essential improvement. We point out possible reasons for this observation and discuss more suitable ways of applying parallel tempering to QCD. T3 - ZIB-Report - 01-33 KW - QCD KW - parallel tempering KW - correlation analysis Y1 - 2001 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:0297-zib-6593 ER - TY - JOUR A1 - Müller, A. A1 - Yan, D. A1 - Wulkow, Michael T1 - Molecular Parameters of Hyperbranched Polymers Made by Self-condensing Vinyl Polymerization, 1. Molecular weight distribution JF - Macromolecules Y1 - 1997 VL - 30 SP - 7015 ER - TY - CHAP A1 - Kornaropoulos, Evgenios I. A1 - Taylor, William R. A1 - Duda, Georg A1 - Ehrig, Rainald A1 - Matziolis, Georg A1 - Müller, Michael A1 - Wassilew, Georgi A1 - Asbach, Patrick A1 - Perka, Carsten A1 - Heller, Markus O. T1 - An imageless method to quantify the mechanical femoral-tibial angle based on the functional determination of joint centers and axes T2 - Annual meeting of the ESMAC 2009 Y1 - 2009 CY - London ER - TY - JOUR A1 - Kornaropoulos, Evgenios I. A1 - Taylor, William R. A1 - Duda, Georg A1 - Ehrig, Rainald A1 - Matziolis, Georg A1 - Müller, Michael A1 - Wassilew, Georgi A1 - Asbach, Patrick A1 - Perka, Carsten A1 - Heller, Markus O. T1 - Frontal plane alignment: An imageless method to predict the mechanical femoral–tibial angle (mFTA) based on functional determination of joint centres and axes JF - Gait & Posture Y1 - 2010 U6 - https://doi.org/10.1016/j.gaitpost.2009.10.006 VL - 31 IS - 2 SP - 204 EP - 208 ER - TY - JOUR A1 - Busch, Markus A1 - Müller, M. A1 - Wulkow, Michael T1 - The use of Simulation Techniques in Developing Kinetic Models for Polymerizations JF - Chem. Eng. Technol. Y1 - 2003 VL - 26 SP - 1031 ER - TY - JOUR A1 - Schrade, Katharina A1 - Tröger, Jessica A1 - Eldashan, Adeep A1 - Zühlke, Kerstin A1 - Abdul Azees, Kamal R. A1 - Elkins, Jonathan M. A1 - Neuenschwander, Martin A1 - Oder, Andreas A1 - Elkewedi, Mohamed A1 - Jaksch, Sarah A1 - Andrae, Karsten A1 - Li, Jinliang A1 - Fernandes, Jaoa A1 - Müller, Paul Markus A1 - Grunwald, Stephan A1 - Marino, Stephen F. A1 - Vukicevic, Tanja A1 - Eichhorst, Jenny A1 - Wiesner, Burkhard A1 - Weber, Marcus A1 - Kapiloff, Michael A1 - Rocks, Oliver A1 - Daumke, Oliver A1 - Wieland, Thomas A1 - Knapp, Stefan A1 - von Kries, Jens Peter A1 - Klussmann, Enno T1 - An AKAP-Lbc-RhoA interaction inhibitor promotes the translocation of aquaporin-2 to the plasma membrane of renal collecting duct principal cells JF - PLOS ONE N2 - Stimulation of renal collecting duct principal cells with antidiuretic hormone (arginine-vasopressin, AVP) results in inhibition of the small GTPase RhoA and the enrichment of the water channel aquaporin-2 (AQP2) in the plasma membrane. The membrane insertion facilitates water reabsorption from primary urine and fine-tuning of body water homeostasis. Rho guanine nucleotide exchange factors (GEFs) interact with RhoA, catalyze the exchange of GDP for GTP and thereby activate the GTPase. However, GEFs involved in the control of AQP2 in renal principal cells are unknown. The A-kinase anchoring protein, AKAP-Lbc, possesses GEF activity, specifically activates RhoA, and is expressed in primary renal inner medullary collecting duct principal (IMCD) cells. Through screening of 18,431 small molecules and synthesis of a focused library around one of the hits, we identified an inhibitor of the interaction of AKAP-Lbc and RhoA. This molecule, Scaff10-8, bound to RhoA, inhibited the AKAP-Lbc-mediated RhoA activation but did not interfere with RhoA activation through other GEFs or activities of other members of the Rho family of small GTPases, Rac1 and Cdc42. Scaff10-8 promoted the redistribution of AQP2 from intracellular vesicles to the periphery of IMCD cells. Thus, our data demonstrate an involvement of AKAP-Lbc-mediated RhoA activation in the control of AQP2 trafficking. Y1 - 2018 U6 - https://doi.org/10.1371/journal.pone.0191423 VL - 13 IS - 1 SP - e0191423 EP - e0191423 ER - TY - GEN A1 - Gleixner, Ambros A1 - Bastubbe, Michael A1 - Eifler, Leon A1 - Gally, Tristan A1 - Gamrath, Gerald A1 - Gottwald, Robert Lion A1 - Hendel, Gregor A1 - Hojny, Christopher A1 - Koch, Thorsten A1 - Lübbecke, Marco A1 - Maher, Stephen J. A1 - Miltenberger, Matthias A1 - Müller, Benjamin A1 - Pfetsch, Marc A1 - Puchert, Christian A1 - Rehfeldt, Daniel A1 - Schlösser, Franziska A1 - Schubert, Christoph A1 - Serrano, Felipe A1 - Shinano, Yuji A1 - Viernickel, Jan Merlin A1 - Walter, Matthias A1 - Wegscheider, Fabian A1 - Witt, Jonas T. A1 - Witzig, Jakob T1 - The SCIP Optimization Suite 6.0 N2 - The SCIP Optimization Suite provides a collection of software packages for mathematical optimization centered around the constraint integer programming framework SCIP. This paper discusses enhancements and extensions contained in version 6.0 of the SCIP Optimization Suite. Besides performance improvements of the MIP and MINLP core achieved by new primal heuristics and a new selection criterion for cutting planes, one focus of this release are decomposition algorithms. Both SCIP and the automatic decomposition solver GCG now include advanced functionality for performing Benders’ decomposition in a generic framework. GCG’s detection loop for structured matrices and the coordination of pricing routines for Dantzig-Wolfe decomposition has been significantly revised for greater flexibility. Two SCIP extensions have been added to solve the recursive circle packing problem by a problem-specific column generation scheme and to demonstrate the use of the new Benders’ framework for stochastic capacitated facility location. Last, not least, the report presents updates and additions to the other components and extensions of the SCIP Optimization Suite: the LP solver SoPlex, the modeling language Zimpl, the parallelization framework UG, the Steiner tree solver SCIP-Jack, and the mixed-integer semidefinite programming solver SCIP-SDP. T3 - ZIB-Report - 18-26 KW - constraint integer programming KW - linear programming KW - mixed-integer linear programming KW - mixed-integer nonlinear programming KW - optimization solver KW - branch-and-cut KW - branch-and-price KW - column generation framework KW - parallelization KW - mixed-integer semidefinite programming KW - Steiner tree optimization Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:0297-zib-69361 SN - 1438-0064 ER -