TY - CHAP A1 - Deuflhard, Peter A1 - Hege, Hans-Christian T1 - Scientific Computing in der Theoretischen Physik - Collected Abstracts T2 - Tagung organisiert von der DMV-Fachgruppe Scientific Computing in Kooperation mit dem GAMM Fachausschuss Scientific Computing Y1 - 1994 CY - Berlin ER - TY - CHAP A1 - Grammel, Martin A1 - Back, Godmar A1 - Wunderling, Roland A1 - Hege, Hans-Christian T1 - Ein paralleles C++/C-Programmiermodell für ein objektorientiertes B&C-Framework T2 - GI/ITG-Workshop, Sept.1994, Mitteilungen der Fachgruppe PARS der Gesellschaft für Informatik (GI) Y1 - 1994 VL - 13 SP - 50 EP - 59 CY - Potsdam ER - TY - CHAP A1 - Wunderling, Roland A1 - Grammel, Martin A1 - Hege, Hans-Christian T1 - Parallele LU-Zerlegung großer, unsymmetrischer, dünn besetzter Matrizen bei hohen Kommunikationslatenzen T2 - GI/ITG-Workshop, Sept.1994, Mitteilungen der Fachgruppe PARS der Gesellschaft für Informatik (GI) Y1 - 1994 VL - 13 SP - 191 EP - 200 CY - Potsdam ER - TY - JOUR A1 - Akemi, K. A1 - Forcrand, Ph. de A1 - Fujisaki, M. A1 - Hashimoto, T. A1 - Hege, Hans-Christian A1 - Hioki, S. A1 - Makino, J. A1 - Miyamura, O. A1 - Nakamura, A. A1 - Okuda, M. A1 - Stamatescu, I. O. A1 - Tago, Yoshio A1 - Takaishi, T. T1 - SU(3) Renormalization Group Study on Parallel Computer AP 1000 JF - Nucl. Phys. B Proc. Suppl. 26 Y1 - 1992 U6 - https://doi.org/10.1016/0920-5632(92)90293-2 SP - 420 EP - 422 ER - TY - JOUR A1 - Akemi, K. A1 - Forcrand, Ph. de A1 - Fujisaki, M. A1 - Hashimoto, T. A1 - Hege, Hans-Christian A1 - Hioki, S. A1 - Makino, J. A1 - Miyamura, O. A1 - Nakamura, A. A1 - Okuda, M. A1 - Stamatescu, I. O. A1 - Tago, Yoshio A1 - Takaishi, T. T1 - QCD on the Highly Parallel Computer AP 1000 JF - Nucl. Phys. B Proc. Suppl. 26 Y1 - 1992 U6 - https://doi.org/10.1016/0920-5632(92)90358-Y SP - 644 EP - 646 ER - TY - CHAP A1 - Hege, Hans-Christian A1 - Stüben, Hinnerk T1 - Vectorization and Parallelization of Irregular Problems via Graph Coloring T2 - Proc. of the ACM Int. Conf. on Supercomputing Y1 - 1991 U6 - https://doi.org/10.1145/109025.109042 SP - 47 EP - 56 CY - Cologne ER - TY - CHAP A1 - Stalling, Detlev A1 - Hege, Hans-Christian T1 - Intelligent Scissors for Medical Image Segmentation T2 - Tagungsband zum 4. Freiburger Workshop Digitale Bildverarbeitung in der Medizin Y1 - 1996 SP - 32 EP - 36 CY - Freiburg ER - TY - CHAP A1 - Stalling, Detlev A1 - Seebaß, Martin A1 - Hege, Hans-Christian A1 - Wust, Peter A1 - Deuflhard, Peter A1 - Felix, Roland T1 - HyperPlan - an Integrated System for Treatment Planning in Regional Hyperthermia T2 - Proceedings of the 17th Congress on Hyperthermic Oncology Y1 - 1996 VL - 2 SP - 552 EP - 554 CY - Rome, Italy ER - TY - JOUR A1 - Hege, Hans-Christian T1 - Problems and Solutions: Product of Chebyshev Polynomials JF - Orthogonal Polynomials and Special Functions Y1 - 1996 VL - 6 (2) SP - 12 ER - TY - CHAP A1 - Höllerer, Tobias A1 - Tönnies, Klaus A1 - Hege, Hans-Christian A1 - Stalling, Detlev T1 - Volume Rendering on Irregular Grids (Abstract) T2 - Int. Workshop on Mathematics and Visualization Y1 - 1995 CY - Berlin, Germany ER - TY - JOUR A1 - Höllerer, Tobias A1 - Tönnies, Klaus A1 - Hege, Hans-Christian A1 - Stalling, Detlev T1 - Der Einfluß der Datenapproximation bei Volume Rendering durch ein Emissions/Absorptions-Modell JF - Visualisierung - Dynamik und Komplexität Y1 - 1995 PB - CEVIS Universität Bremen und Fachgruppe 4.2.1 der Gesellschaft für Informatik CY - Bremen, Germany ER - TY - CHAP A1 - Stalling, Detlev A1 - Hege, Hans-Christian T1 - Fast and Resolution-Independent Line Integral Convolution T2 - Proceedings of SIGGRAPH ’95 Y1 - 1995 U6 - https://doi.org/10.1145/218380.218448 SP - 249 EP - 256 PB - Computer Graphics Annual Conference Series, ACM SIGGRAPH CY - Los Angeles, California ER - TY - JOUR A1 - Hege, Hans-Christian T1 - Scaling study of pure SU(3) theory - the QCD-TARO collaboration JF - Nucl. Phys. B Proc. Suppl. Y1 - 1994 U6 - https://doi.org/10.1016/0920-5632(94)90358-1 VL - 34 SP - 246 EP - 252 ER - TY - JOUR A1 - Hashimoto, T. A1 - Hege, Hans-Christian T1 - QCD on the Massively Parallel Computer AP 1000 JF - Int. J. Mod. Phys. Y1 - 1993 U6 - https://doi.org/10.1142/S0129183193000975 VL - 4 IS - 6 SP - 1233 EP - 1253 ER - TY - JOUR A1 - Hashimoto, T. A1 - Hege, Hans-Christian T1 - Autocorrelation in Updating Pure SU(3) Lattice Gauge Theory by the Use of Overrelaxed Algorithms JF - Nucl. Phys. B Proc. Suppl. Y1 - 1993 U6 - https://doi.org/10.1016/0920-5632(93)90202-H VL - 30 SP - 253 EP - 256 ER - TY - JOUR A1 - Hashimoto, T. A1 - Hege, Hans-Christian T1 - Study of Spatial Size Effects in Quenched Wilson Hadron Spectroscopy at beta = 6.3 JF - Nucl. Phys. B Proc. Suppl. Y1 - 1993 U6 - https://doi.org/10.1016/0920-5632(93)90230-4 VL - 30 SP - 373 EP - 376 ER - TY - JOUR A1 - Hashimoto, T. A1 - Hege, Hans-Christian T1 - Monte Carlo Renormalization Study at Large beta in the Confinement Region JF - Nuclear Phys. B. Proc. Suppl. Y1 - 1993 U6 - https://doi.org/10.1016/0920-5632(93)90263-6 VL - 30 SP - 517 EP - 520 ER - TY - GEN A1 - Wunderling, Roland A1 - Hege, Hans-Christian T1 - AGIL - the Adaptable Graphical Interface Layer, Programmierer-Handbuch Y1 - 1992 SP - 34pp. PB - Interner Report, Konrad-Zuse-Zentrum für Informationstechnik Berlin (ZIB), Germany ER - TY - JOUR A1 - Hege, Hans-Christian A1 - Knecht, Renate T1 - Conference Report: Parallel Computing 91 JF - Parallel Computing Y1 - 1992 VL - 18 IS - 4 SP - 473 EP - 476 ER - TY - JOUR A1 - Hashimoto, T. A1 - Hege, Hans-Christian T1 - Hadron Spectroscopy on a 32^3 * 48 Lattice JF - Nucl. Phys. B Proc. Suppl. 26 Y1 - 1992 U6 - https://doi.org/10.1016/0920-5632(92)90257-S SP - 293 EP - 295 ER - TY - CHAP A1 - Dercksen, Vincent J. A1 - Egger, Robert A1 - Hege, Hans-Christian A1 - Oberlaender, Marcel T1 - Synaptic Connectivity in Anatomically Realistic Neural Networks: Modeling and Visual Analysis T2 - Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM) Y1 - 2012 U6 - https://doi.org/10.2312/VCBM/VCBM12/017-024 SP - 17 EP - 24 CY - Norrköping, Sweden ER - TY - GEN A1 - Pfister, Hanspeter A1 - Kaynig, Verena A1 - Botha, Charl A1 - Bruckner, Stefan A1 - Dercksen, Vincent J. A1 - Hege, Hans-Christian A1 - Roerdink, Jos T1 - Visualization in Connectomics Y1 - 2012 U6 - https://doi.org/10.1007/978-1-4471-6497-5_21 ER - TY - JOUR A1 - Weber, Britta A1 - Greenan, Garrett A1 - Prohaska, Steffen A1 - Baum, Daniel A1 - Hege, Hans-Christian A1 - Müller-Reichert, Thomas A1 - Hyman, Anthony A1 - Verbavatz, Jean-Marc T1 - Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryos JF - Journal of Structural Biology Y1 - 2012 UR - http://www.sciencedirect.com/science/article/pii/S1047847711003509 U6 - https://doi.org/10.1016/j.jsb.2011.12.004 VL - 178 IS - 2 SP - 129 EP - 138 ER - TY - JOUR A1 - Kasten, Jens A1 - Reininghaus, Jan A1 - Hotz, Ingrid A1 - Hege, Hans-Christian T1 - Two-Dimensional Time-Dependent Vortex Regions Based on the Acceleration Magnitude JF - IEEE Transactions on Visualization and Computer Graphics Y1 - 2011 VL - 17 IS - 12 SP - 2080 EP - 2087target ER - TY - JOUR A1 - Lindow, Norbert A1 - Baum, Daniel A1 - Hege, Hans-Christian T1 - Voronoi-Based Extraction and Visualization of Molecular Paths JF - IEEE Transactions on Visualization and Computer Graphics Y1 - 2011 U6 - https://doi.org/10.1109/TVCG.2011.259 VL - 17 IS - 12 SP - 2025 EP - 2034 ER - TY - JOUR A1 - Lacarelle, Arnaud A1 - P. Moeck, Jonas A1 - Paschereit, Christian A1 - Gelbert, Gregor A1 - King, Rudibert A1 - M. Luchtenburg, Dirk A1 - Noack, Bernd R. A1 - Kasten, Jens A1 - Hege, Hans-Christian T1 - Modeling a Fuel/Air Mixing to Control the Pressure Pulsations and NOx Emissions in a Lean Premixed Combustor JF - Active Flow Control II Y1 - 2010 U6 - https://doi.org/10.1007/978-3-642-11735-0_20 VL - 108 SP - 307 EP - 321 PB - Springer, Berlin ER - TY - JOUR A1 - Lindow, Norbert A1 - Baum, Daniel A1 - Prohaska, Steffen A1 - Hege, Hans-Christian T1 - Accelerated Visualization of Dynamic Molecular Surfaces JF - Comput. Graph. Forum Y1 - 2010 U6 - https://doi.org/10.1111/j.1467-8659.2009.01693.x VL - 29 SP - 943 EP - 952 ER - TY - CHAP A1 - Reininghaus, Jan A1 - Günther, David A1 - Hotz, Ingrid A1 - Prohaska, Steffen A1 - Hege, Hans-Christian T1 - TADD: A Computational Framework for Data Analysis Using Discrete Morse Theory T2 - Mathematical Software - ICMS 2010 Y1 - 2010 U6 - https://doi.org/10.1007/978-3-642-15582-6_35 VL - 6327 SP - 198 EP - 208 PB - Springer ER - TY - JOUR A1 - Rybak, Jürgen A1 - Kuß, Anja A1 - Lamecker, Hans A1 - Zachow, Stefan A1 - Hege, Hans-Christian A1 - Lienhard, Matthias A1 - Singer, Jochen A1 - Neubert, Kerstin A1 - Menzel, Randolf T1 - The Digital Bee Brain: Integrating and Managing Neurons in a Common 3D Reference System JF - Front. Syst. Neurosci. Y1 - 2010 U6 - https://doi.org/10.3389/fnsys.2010.00030 VL - 4 IS - 30 ER - TY - CHAP A1 - Kasten, Jens A1 - Weinkauf, Tino A1 - Petz, Christoph A1 - Hotz, Ingrid A1 - Noack, Bernd R. A1 - Hege, Hans-Christian T1 - Extraction of Coherent Structures from Natural and Actuated Flows T2 - Active Flow Control II Y1 - 2010 SN - 978-3-642-11734-3 U6 - https://doi.org/10.1007/978-3-642-11735-0_24 VL - 108 SP - 373 EP - 387 PB - Springer, Berlin ER - TY - JOUR A1 - Otto, Mathias A1 - Germer, Tobias A1 - Hege, Hans-Christian A1 - Theisel, Holger T1 - Uncertain 2D Vector Field Topology JF - Comput. Graph. Forum Y1 - 2010 U6 - https://doi.org/10.1111/j.1467-8659.2009.01604.x VL - 29 SP - 347 EP - 356 ER - TY - JOUR A1 - Goubergrits, Leonid A1 - Thamsen, Bente A1 - Berthe, André A1 - Poethke, Jens A1 - Kertzscher, Ulrich A1 - Affeld, Klaus A1 - Petz, Christoph A1 - Hege, Hans-Christian A1 - Hoch, Heinrich A1 - Spuler, Andreas T1 - In Vitro Study of Near-Wall Flow in a Cerebral Aneurysm Model with and without Coils JF - American Journal of Neuroradiology Y1 - 2010 U6 - https://doi.org/10.3174/ajnr.A2121 VL - 31:8 SP - 1521 EP - 1528 ER - TY - JOUR A1 - Hege, Hans-Christian A1 - Laidlaw, David A1 - Machiraju, Raghu T1 - Guest Editor's Introduction: Special Section on Volume Graphics and Point-Based Graphics JF - IEEE Trans. Vis. Comput. Graph. Y1 - 2010 U6 - https://doi.org/10.1109/TVCG.2010.72 VL - 16 IS - 4 SP - 531 EP - 532 ER - TY - JOUR A1 - Lindow, Norbert A1 - Baum, Daniel A1 - Bondar, Ana-Nicoleta A1 - Hege, Hans-Christian T1 - Exploring cavity dynamics in biomolecular systems JF - BMC Bioinformatics Y1 - 2013 U6 - https://doi.org/10.1186/1471-2105-14-S19-S5 VL - 14 ET - (Suppl 19):S5 ER - TY - JOUR A1 - Pöthkow, Kai A1 - Petz, Christoph A1 - Hege, Hans-Christian T1 - Approximate Level-Crossing Probabilities for Interactive Visualization of Uncertain Isocontours JF - International Journal for Uncertainty Quantification Y1 - 2013 U6 - https://doi.org/10.1615/Int.J.UncertaintyQuantification.2012003958 VL - 3 IS - 2 SP - 101 EP - 117 ER - TY - GEN A1 - Homberg, Ulrike A1 - Baum, Daniel A1 - Wiebel, Alexander A1 - Prohaska, Steffen A1 - Hege, Hans-Christian ED - Bremer, Peer-Timo ED - Hotz, Ingrid ED - Pascucci, Valerio ED - Peikert, Ronald T1 - Definition, Extraction, and Validation of Pore Structures in Porous Materials BT - Theory, Algorithms, and Applications T2 - Topological Methods in Data Analysis and Visualization III Y1 - 2014 U6 - https://doi.org/10.1007/978-3-319-04099-8_15 SP - 235 EP - 248 PB - Springer ER - TY - CHAP A1 - Rosanwo, Olufemi A1 - Petz, Christoph A1 - Prohaska, Steffen A1 - Hotz, Ingrid A1 - Hege, Hans-Christian ED - Eades, Peter ED - Ertl, Thomas ED - Shen, Han-Wei T1 - Dual Streamline Seeding T2 - Proceedings of the IEEE Pacific Visualization Symposium Y1 - 2009 SP - 9 EP - 16 CY - Beijing, China ER - TY - CHAP A1 - Rybak, Jürgen A1 - Kuß, Anja A1 - Holler, Wolfgang A1 - Brandt, Robert A1 - Hege, Hans-Christian A1 - Menzel, Randolf T1 - The HoneyBee Standard Brain (HSB) - a versatile atlas tool for integrating data and data exchange in the neuroscience community T2 - BMC Neuroscience Y1 - 2009 U6 - https://doi.org/10.1186/1471-2202-10-S1-P1 VL - 10 (Suppl 1):P1 ER - TY - JOUR A1 - Oberlaender, Marcel A1 - Dercksen, Vincent J. A1 - Egger, Robert A1 - Gensel, Maria A1 - Sakmann, Bert A1 - Hege, Hans-Christian T1 - Automated three-dimensional detection and counting of neuron somata JF - Journal of Neuroscience Methods Y1 - 2009 U6 - https://doi.org/10.1016/j.jneumeth.2009.03.008 VL - 180 IS - 1 SP - 147 EP - 160 ER - TY - JOUR A1 - Goubergrits, Leonid A1 - Weber, Sarah A1 - Petz, Christoph A1 - Spuler, Andreas A1 - Pöthke, Jens A1 - Berthe, André A1 - Hege, Hans-Christian T1 - Wall-PIV as a Near Wall Flow Validation Tool for CFD JF - Journal of Visualization Y1 - 2009 VL - 12 IS - 3 SP - 241 EP - 250 ER - TY - JOUR A1 - Goubergrits, Leonid A1 - Wellnhofer, Ernst A1 - Kertzscher, Ulrich A1 - Affeld, Klaus A1 - Petz, Christoph A1 - Hege, Hans-Christian T1 - Coronary Artery WSS Profiling Using a Geometry Reconstruction Based on Biplane Angiography JF - Annals of Biomedical Engineering Y1 - 2009 U6 - https://doi.org/s10439-009-9656-7 VL - 37 IS - 4 SP - 682 EP - 691 PB - Springer ER - TY - BOOK A1 - Hege, Hans-Christian A1 - (Eds.), Konrad T1 - Mathematical Visualization - Algorithms, Applications, and Numerics Y1 - 1998 SN - ISBN 3-540-63991-8 PB - Springer CY - Heidelberg ER - TY - BOOK A1 - Hege, Hans-Christian A1 - Polthier, Konrad T1 - VideoMath - Festival at ICM 98 T3 - Springer VideoMath Y1 - 1998 SN - 978-3-540-21385-7 ER - TY - JOUR A1 - Cournia, Zoe A1 - Allen, Toby W. A1 - Andricioaei, Ioan A1 - Antonny, Bruno A1 - Baum, Daniel A1 - Brannigan, Grace A1 - Buchete, Nicolae-Viorel A1 - Deckman, Jason T. A1 - Delemotte, Lucie A1 - del Val, Coral A1 - Friedman, Ran A1 - Gkeka, Paraskevi A1 - Hege, Hans-Christian A1 - Hénin, Jérôme A1 - Kasimova, Marina A. A1 - Kolocouris, Antonios A1 - Klein, Michael L. A1 - Khalid, Syma A1 - Lemieux, Joanne A1 - Lindow, Norbert A1 - Roy, Mahua A1 - Selent, Jana A1 - Tarek, Mounir A1 - Tofoleanu, Florentina A1 - Vanni, Stefano A1 - Urban, Sinisa A1 - Wales, David J. A1 - Smith, Jeremy C. A1 - Bondar, Ana-Nicoleta T1 - Membrane Protein Structure, Function and Dynamics: A Perspective from Experiments and Theory JF - Journal of Membrane Biology Y1 - 2015 U6 - https://doi.org/10.1007/s00232-015-9802-0 VL - 248 IS - 4 SP - 611 EP - 640 ER - TY - JOUR A1 - Mücklich, Frank A1 - Webel, Johannes A1 - Aboulfadl, Hisham A1 - Lindow, Norbert A1 - Hege, Hans-Christian T1 - Correlative Tomography – Extraction of Reliable Information with Adequate Resolution from mm Scale Down to Sub-nm Scale JF - Microsc. Microanal. Y1 - 2014 U6 - https://doi.org/10.1017/S1431927614005911 VL - 20 IS - Suppl 3 SP - 838 EP - 839 ER - TY - CHAP A1 - Engelke, Wito A1 - Kuhn, Alexander A1 - Flatken, Markus A1 - Chen, Fang A1 - Hege, Hans-Christian A1 - Gerndt, Andreas A1 - Hotz, Ingrid T1 - Atmospheric Impact of Volcano Eruptions T2 - Proceedings IEEE SciVis 2014 N2 - The analysis of data that captures volcanic eruptions and their atmospheric aftermath plays an important role for domain experts to gain a deeper understanding of the volcanic eruption and their consequences for atmosphere, climate and air traffic. Thereby, one major challenge is to extract and combine the essential information, which is spread over various, mostly sparse data sources. This requires a careful integration of each data set with its strength and limitations. The sparse, but more reliable measurement data is mainly used to calibrate the more dense simulation data. This work combines a collection of visualization approaches into an exploitative framework. The goal is to support the domain experts to build a complete picture of the situation. But it is also important to understand the individual data sources, the wealth of their information and the quality of the simulation results. All presented methods are designed for direct interaction with the data from different perspectives rather than the sole generation of some final images. Y1 - 2014 ER - TY - GEN A1 - Deuflhard, Peter A1 - Hege, Hans-Christian ED - Lepper, Verena ED - Deuflhard, Peter ED - Markschies, Christoph T1 - Raumtiefe in Malerei und Computergrafik T2 - Räume - Bilder - Kulturen N2 - Einführung: Die Tiefenwirkung dreidimensionaler Räume in einem zweidimensionalen Bild einzufangen, ist ein Faszinosum nahezu aller Kulturen der Menschheitsgeschichte. Der vorliegende Aufsatz folgt den Spuren dieses Faszinosums, vergleichend in der Malerei und der mathematisierten Computergrafik. Die Entdeckung der Zentralperspektive in der italienischen Renaissance zeigt bereits den engen Zusammenhang von Malerei und Mathematik. Auf der Suche nach Maltechniken, mit denen Raumtiefe bildnerisch dargestellt werden kann, beginnen wir in Kap. 2 mit einem chronologischen Gang durch verschiedene Epochen der europäischen Malerei. Hieraus abgeleitete Prinzipien, soweit sie im Rechner realisierbar scheinen, stellen wir in Kap. 3 am Beispiel moderner Methoden der mathematischen Visualisierung vor. Y1 - 2015 SN - 978-3-11-035993-0 SP - 33 EP - 46 PB - Walter De Gruyter ER - TY - JOUR A1 - Kasten, Jens A1 - Reininghaus, Jan A1 - Hotz, Ingrid A1 - Hege, Hans-Christian A1 - Noack, Bernd A1 - Daviller, Guillaume A1 - Morzyński, Marek T1 - Acceleration feature points of unsteady shear flows JF - Archives of Mechanics N2 - A framework is proposed for extracting features in 2D transient flows, based on the acceleration field to ensure Galilean invariance. The minima of the acceleration magnitude, i.e. a superset of the acceleration zeros, are extracted and discriminated into vortices and saddle points --- based on the spectral properties of the velocity Jacobian. The extraction of topological features is performed with purely combinatorial algorithms from discrete computational topology. The feature points are prioritized with persistence, as a physically meaningful importance measure. These features are tracked in time with a robust algorithm for tracking features. Thus a space-time hierarchy of the minima is built and vortex merging events are detected. The acceleration feature extraction strategy is applied to three two-dimensional shear flows: (1) an incompressible periodic cylinder wake, (2) an incompressible planar mixing layer and (3) a weakly compressible planar jet. The vortex-like acceleration feature points are shown to be well aligned with acceleration zeros, maxima of the vorticity magnitude, minima of pressure field and minima of λ2. Y1 - 2016 VL - 68 IS - 1 SP - 55 EP - 80 ER - TY - CHAP A1 - Agudo Jácome, Leonardo A1 - Hege, Hans-Christian A1 - Paetsch, Olaf A1 - Pöthkow, Kai T1 - 3D Reconstruction, Visualization and Quantification of Dislocations from Transmission Electron Microscopy Stereo-Pairs T2 - Microscopy and Microanalysis 2016, July 24-28 Columbus, Ohio Y1 - 2016 UR - https://www.microscopy.org/MandM/2016/program/abstracts/PDP-57.pdf ER - TY - CHAP A1 - Kuhn, Alexander A1 - Engelke, Wito A1 - Flatken, Markus A1 - Hege, Hans-Christian A1 - Hotz, Ingrid T1 - Topology-based Analysis for Multimodal Atmospheric Data of Volcano Eruptions T2 - Topological Methods in Data Analysis and Visualization IV Y1 - 2017 U6 - https://doi.org/10.1007/978-3-319-44684-4_2 SP - 35 EP - 50 PB - Springer CY - Cham, Schweiz ER - TY - JOUR A1 - Günther, Tobias A1 - Kuhn, Alexander A1 - Hege, Hans-Christian A1 - Theisel, Holger T1 - MCFTLE: Monte Carlo Rendering of Finite-Time Lyapunov Exponent Fields JF - Computer Graphics Forum Y1 - 2016 U6 - https://doi.org/10.1111/cgf.12914 N1 - By mistake the fourth author Hans-Christian Hege has been ommitted in the journal publication VL - 35 IS - 3 SP - 381 EP - 390 ER - TY - CHAP A1 - Sagnol, Guillaume A1 - Hege, Hans-Christian A1 - Weiser, Martin T1 - Using sparse kernels to design computer experiments with tunable precision T2 - 22nd Intern. Conf. on Computational Statistics - COMPSTAT 2016, Oviedo, Spain, 23-26 August 2016, Proceedings ISBN 978-90-73592-36-0 Y1 - 2016 SP - 397 EP - 408 ER - TY - CHAP A1 - Baum, Daniel A1 - Mahlow, Kristin A1 - Lamecker, Hans A1 - Zachow, Stefan A1 - Müller, Johannes A1 - Hege, Hans-Christian T1 - The Potential of Surface-based Geometric Morphometrics for Evolutionary Studies: An Example using Dwarf Snakes (Eirenis) T2 - Abstract in DigitalSpecimen 2014 N2 - Geometric morphometrics plays an important role in evolutionary studies. The state-of-the-art in this field are landmark-based methods. Since the landmarks usually need to be placed manually, only a limited number of landmarks are generally used to represent the shape of an anatomical structure. As a result, shape characteristics that cannot be properly represented by small sets of landmarks are disregarded. In this study, we present a method that is free of this limitation. The method takes into account the whole shape of an anatomical structure, which is represented as a surface, hence the term ‘surface-based morphometrics’. Correspondence between two surfaces is established by defining a partitioning of the surfaces into homologous surface patches. The first step for the generation of a surface partitioning is to place landmarks on the surface. Subsequently, the landmarks are connected by curves lying on the surface. The curves, called ‘surface paths’, might either follow specific anatomical features or they can be geodesics, that is, shortest paths on the surface. One important requirement, however, is that the resulting surface path networks are topologically equivalent across all surfaces. Once the surface path networks have been defined, the surfaces are decomposed into patches according to the path networks. This approach has several advantages. One of them is that we can discretize the surface by as many points as desired. Thus, even fine shape details can be resolved if this is of interest for the study. Since a point discretization is used, another advantage is that well-established analysis methods for landmark-based morphometrics can be utilized. Finally, the shapes can be easily morphed into one another, thereby greatly supporting the understanding of shape changes across all considered specimens. To show the potential of the described method for evolutionary studies of biological specimens, we applied the method to the para-basisphenoid complex of the snake genus Eirenis. By using this anatomical structure as example, we present all the steps that are necessary for surface-based morphometrics, including the segmentation of the para-basisphenoid complex from micro-CT data sets. We also show some first results using statistical analysis as well as classification methods based on the presented technique. Y1 - 2014 ER - TY - GEN A1 - Günther, Tobias A1 - Kuhn, Alexander A1 - Hege, Hans-Christian A1 - Gross, Markus A1 - Theisel, Holger T1 - Progressive Monte-Carlo Rendering of Atmospheric Flow Features Across Scales T2 - 69th Annual Meeting of the APS Division of Fluid Dynamics, Gallery of Fluid Motion, Nov 20-22, 2016, Portland, OR, USA. N2 - To improve existing weather prediction and reanalysis capabilities, high-resolution and multi-modal climate data becomes an increasingly important topic. The advent of increasingly dense numerical simulation of atmospheric phenomena, provides new means to better understand dynamic processes and to visualize structural flow patterns that remain hidden otherwise. In the presented illustrations we demonstrate an advanced technique to visualize multiple scales of dense flow fields and Lagrangian patterns therein, simulated by state-of-the-art simulation models for each scale. They provide a deeper insight into the structural differences and patterns that occur on each scale and highlight the complexity of flow phenomena in our atmosphere. Y1 - 2016 U6 - https://doi.org/10.1103/APS.DFD.2016.GFM.P0030 ER - TY - CHAP A1 - Arlt, Tobias A1 - Lindow, Norbert A1 - Baum, Daniel A1 - Hilger, Andre A1 - Mahnke, Ingo A1 - Hege, Hans-Christian A1 - Lepper, Verena A1 - Siopi, Tzulia A1 - Mahnke, Heinz.Eberhard T1 - Virtual Access to Hidden Texts – Study of Ancient Papyri T2 - Eighth Joint BER II and BESSY II User Meeting, Dec 7-9, 2016, Berlin, Germany N2 - When physical unfolding/unrolling of papyri is not possible or too dangerous for preserving the precious object, tomographic approaches may be the ap- propriate alternative. Requirements are the resolution and the contrast to distinguish writing and substrate. The steps to be performed are the following: (1) Select the object of interest (archaeological arguments, cultural back- ground of the object, etc.). (2) Find the proper physical procedure, especially with respect to contrast, take the tomographic data, e.g. by absorption x-ray tomography. (3) Apply mathematical unfolding transformations to the tomographic data, in order to obtain a 2d-planar reconstruction of text. Y1 - 2016 ER - TY - CHAP A1 - Kuhn, Alexander A1 - Hege, Hans-Christian T1 - Object-based visualization and evaluation of cloud-resolving simulations T2 - Book of Abstracts, SCCS 2017 – Scaling Cascades in Complex Systems, Mar 27-29, 2017, Berlin, Germany N2 - Recent advances in high-resolution, cloud resolving simulation models pose several challenges towards respective analysis methodologies. To enable efficient comparison and validation of such models efficient, scalable, and informative diagnostic procedures are mandatory. In this talk, an object-based evaluation scheme based on the notion of scalar field topology will be presented. The presentation will cover the application of topological clustering procedures for object identification, tracking, and the retrieval of object-based statistics. The pro-posed methodology is shown to enable an advanced in-depth evaluation and visualization of high cloud-resolving models. Using a newly developed large-scale high-resolution model (i.e., HD(CP)2 ICON), it will be demonstrated that the presented procedures are applicable to assess the model performance compared to measurements (e.g., radar, satellite) and standard operational models (COSMO) at different domains and spatial scales. Y1 - 2017 ER - TY - GEN A1 - Polthier, Konrad A1 - Sullivan, John A1 - Ziegler, Günter M. A1 - Hege, Hans-Christian ED - Deuflhard, Peter ED - et al., T1 - Visualization T2 - MATHEON - Mathematics for Key Technologies Y1 - 2014 SN - 978-3-03719-137-8 U6 - https://doi.org/10.4171/137 SP - 335 EP - 339 PB - European Mathematical Society ER - TY - GEN A1 - Lamecker, Hans A1 - Hege, Hans-Christian A1 - Tabelow, Karsten A1 - Polzehl, Jörg ED - Deuflhard, Peter ED - et al., T1 - Image Processing T2 - MATHEON - Mathematics for Key Technologies Y1 - 2014 U6 - https://doi.org/10.4171/137 SP - 359 EP - 376 PB - European Mathematical Society ER - TY - JOUR A1 - Kramer, Tobias A1 - Noack, Matthias A1 - Baum, Daniel A1 - Hege, Hans-Christian A1 - Heller, Eric J. T1 - Dust and gas emission from cometary nuclei: the case of comet 67P/Churyumov-Gerasimenko JF - Advances in Physics: X N2 - Comets display with decreasing solar distance an increased emission of gas and dust particles, leading to the formation of the coma and tail. Spacecraft missions provide insight in the temporal and spatial variations of the dust and gas sources located on the cometary nucleus. For the case of comet 67P/Churyumov-Gerasimenko (67P/C-G), the long-term obser- vations from the Rosetta mission point to a homogeneous dust emission across the entire illuminated surface. Despite the homogeneous initial dis- tribution, a collimation in jet-like structures becomes visible. We propose that this observation is linked directly to the complex shape of the nucleus and projects concave topographical features into the dust coma. To test this hypothesis, we put forward a gas-dust description of 67P/C-G, where gravitational and gas forces are accurately determined from the surface mesh and the rotation of the nucleus is fully incorporated. The emerging jet-like structures persist for a wide range of gas-dust interactions and show a dust velocity dependent bending. Y1 - 2018 U6 - https://doi.org/10.1080/23746149.2017.1404436 VL - 3 IS - 1 SP - 1404436 ER - TY - CHAP A1 - Sakurai, Daisuke A1 - Hege, Hans-Christian A1 - Kuhn, Alexander A1 - Rust, Henning A1 - Kern, Bastian A1 - Breitkopf, Tom-Lukas T1 - An Application-Oriented Framework for Feature Tracking in Atmospheric Sciences T2 - Proceedings of 2017 IEEE 7th Symposium on Large Data Analysis and Visualization (LDAV) N2 - In atmospheric sciences, sizes of data sets grow continuously due to increasing resolutions. A central task is the comparison of spatiotemporal fields, to assess different simulations and to compare simulations with observations. A significant information reduction is possible by focusing on geometric-topological features of the fields or on derived meteorological objects. Due to the huge size of the data sets, spatial features have to be extracted in time slices and traced over time. Fields with chaotic component, i.e. without 1:1 spatiotemporal correspondences, can be compared by looking upon statistics of feature properties. Feature extraction, however, requires a clear mathematical definition of the features - which many meteorological objects still lack. Traditionally, object extractions are often heuristic, defined only by implemented algorithms, and thus are not comparable. This work surveys our framework designed for efficient development of feature tracking methods and for testing new feature definitions. The framework supports well-established visualization practices and is being used by atmospheric researchers to diagnose and compare data. Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:0297-zib-66685 SP - 96 EP - 97 ER - TY - JOUR A1 - Günther, Tobias A1 - Kuhn, Alexander A1 - Hege, Hans-Christian A1 - Gross, Markus A1 - Theisel, Holger T1 - Progressive Monte Carlo rendering of atmospheric flow features across scales JF - Physical Review Fluids N2 - To improve existing weather prediction and reanalysis capabilities, high-resolution and multi-modal climate data becomes an increasingly important topic. The advent of increasingly dense numerical simulation of atmospheric phenomena, provides new means to better understand dynamic processes and to visualize structural flow patterns that remain hidden otherwise. In the presented illustrations we demonstrate an advanced technique to visualize multiple scales of dense flow fields and Lagrangian patterns therein, simulated by state-of-the-art simulation models for each scale. They provide a deeper insight into the structural differences and patterns that occur on each scale and highlight the complexity of flow phenomena in our atmosphere. This paper is associated with a poster winner of a 2016 APS/DFD Milton van Dyke Award for work presented at the DFD Gallery of Fluid Motion. The original poster is available from the Gallery of Fluid Motion, https://doi.org/10.1103/APS.DFD.2016.GFM.P0030 Y1 - 2017 U6 - https://doi.org/10.1103/PhysRevFluids.2.090502 VL - 2 SP - 09050-1 EP - 09050-3 ER - TY - JOUR A1 - Baum, Daniel A1 - Lindow, Norbert A1 - Hege, Hans-Christian A1 - Lepper, Verena A1 - Siopi, Tzulia A1 - Kutz, Frank A1 - Mahlow, Kristin A1 - Mahnke, Heinz-Eberhard T1 - Revealing hidden text in rolled and folded papyri JF - Applied Physics A N2 - Ancient Egyptian papyri are often folded, rolled up or kept as small packages, sometimes even sealed. Physically unrolling or unfolding these packages might severely damage them. We demonstrate a way to get access to the hidden script without physical unfolding by employing computed tomography and mathematical algorithms for virtual unrolling and unfolding. Our algorithmic approaches are combined with manual interaction. This provides the necessary flexibility to enable the unfolding of even complicated and partly damaged papyrus packages. In addition, it allows us to cope with challenges posed by the structure of ancient papyrus, which is rather irregular, compared to other writing substrates like metallic foils or parchment. Unfolding of packages is done in two stages. In the first stage, we virtually invert the physical folding process step by step until the partially unfolded package is topologically equivalent to a scroll or a papyrus sheet folded only along one fold line. To minimize distortions at this stage, we apply the method of moving least squares. In the second stage, the papyrus is simply flattened, which requires the definition of a medial surface. We have applied our software framework to several papyri. In this work, we present the results of applying our approaches to mockup papyri that were either rolled or folded along perpendicular fold lines. In the case of the folded papyrus, our approach represents the first attempt to address the unfolding of such complicated folds. Y1 - 2017 U6 - https://doi.org/10.1007/s00339-017-0808-6 VL - 123 IS - 3 SP - 171 ER - TY - CHAP A1 - Coconu, Liviu A1 - Hege, Hans-Christian T1 - devEyes: Tangible Devices on Augmented Passive Surfaces T2 - TEI '17 Proceedings of the Eleventh International Conference on Tangible, Embedded, and Embodied Interaction, Yokohama, Japan, March 20 - 23, 2017 N2 - We present a novel approach to turn smartphones/ tablets into tangible near-surface devices with augmented reality (AR) capability on virtually any passive surface, like desks, tables and wallboards. A low-cost optoelectronic add-on for the device back camera enables position tracking on an almost invisible printable fiducial marker grid. This approach is promising in terms of adoption potential because it can be used anywhere with existing devices, requires no dedicated hardware installations and is applicable to a broad range of real-world applications. Y1 - 2017 U6 - https://doi.org/10.1145/3024969.3025065 SP - 409 EP - 411 ER - TY - JOUR A1 - Heinze, Rieke A1 - Dipankar, Anurag A1 - Henken, Cintia Carbajal A1 - Moseley, Christopher A1 - Sourdeval, Odran A1 - Trömel, Silke A1 - Xie, Xinxin A1 - Adamidis, Panos A1 - Ament, Felix A1 - Baars, Holger A1 - Barthlott, Christian A1 - Behrendt, Andreas A1 - Blahak, Ulrich A1 - Bley, Sebastian A1 - Brdar, Slavko A1 - Brueck, Matthias A1 - Crewell, Susanne A1 - Deneke, Hartwig A1 - Di Girolamo, Paolo A1 - Evaristo, Raquel A1 - Fischer, Jürgen A1 - Frank, Christopher A1 - Friederichs, Petra A1 - Göcke, Tobias A1 - Gorges, Ksenia A1 - Hande, Luke A1 - Hanke, Moritz A1 - Hansen, Akio A1 - Hege, Hans-Christian A1 - Hose, Corinna A1 - Jahns, Thomas A1 - Kalthoff, Norbert A1 - Klocke, Daniel A1 - Kneifel, Stefan A1 - Knippertz, Peter A1 - Kuhn, Alexander A1 - van Laar, Thriza A1 - Macke, Andreas A1 - Maurer, Vera A1 - Mayer, Bernhard A1 - Meyer, Catrin I. A1 - Muppa, Shravan K. A1 - Neggers, Roeland A. J. A1 - Orlandi, Emiliano A1 - Pantillon, Florian A1 - Pospichal, Bernhard A1 - Röber, Niklas A1 - Scheck, Leonhard A1 - Seifert, Axel A1 - Seifert, Patric A1 - Senf, Fabian A1 - Siligam, Pavan A1 - Simmer, Clemens A1 - Steinke, Sandra A1 - Stevens, Bjorn A1 - Wapler, Kathrin A1 - Weniger, Michael A1 - Wulfmeyer, Volker A1 - Zängl, Günther A1 - Zhang, Dan A1 - Quaas, Johannes T1 - Large-eddy simulations over Germany using ICON: a comprehensive evaluation JF - Quarterly Journal of the Royal Meteorological Society N2 - Large-eddy simulations (LES) with the new ICOsahedral Non-hydrostatic atmosphere model (ICON) covering Germany are evaluated for four days in spring 2013 using observational data from various sources. Reference simulations with the established Consortium for Small-scale Modelling (COSMO) numerical weather prediction model and further standard LES codes are performed and used as a reference. This comprehensive evaluation approach covers multiple parameters and scales, focusing on boundary-layer variables, clouds and precipitation. The evaluation points to the need to work on parametrizations influencing the surface energy balance, and possibly on ice cloud microphysics. The central purpose for the development and application of ICON in the LES configuration is the use of simulation results to improve the understanding of moist processes, as well as their parametrization in climate models. The evaluation thus aims at building confidence in the model's ability to simulate small- to mesoscale variability in turbulence, clouds and precipitation. The results are encouraging: the high-resolution model matches the observed variability much better at small- to mesoscales than the coarser resolved reference model. In its highest grid resolution, the simulated turbulence profiles are realistic and column water vapour matches the observed temporal variability at short time-scales. Despite being somewhat too large and too frequent, small cumulus clouds are well represented in comparison with satellite data, as is the shape of the cloud size spectrum. Variability of cloud water matches the satellite observations much better in ICON than in the reference model. In this sense, it is concluded that the model is fit for the purpose of using its output for parametrization development, despite the potential to improve further some important aspects of processes that are also parametrized in the high-resolution model. Y1 - 2017 U6 - https://doi.org/10.1002/qj.2947 VL - 143 IS - 702 SP - 69 EP - 100 ER - TY - JOUR A1 - Kozlíková, Barbora A1 - Krone, Michael A1 - Falk, Martin A1 - Lindow, Norbert A1 - Baaden, Marc A1 - Baum, Daniel A1 - Viola, Ivan A1 - Parulek, Julius A1 - Hege, Hans-Christian T1 - Visualization of Biomolecular Structures: State of the Art Revisited JF - Computer Graphics Forum N2 - Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on computerized geometric and visual representations of three-dimensional, complex, large and time-varying molecular structures. The report presents a taxonomy that demonstrates which areas of molecular visualization have already been extensively investigated and where the field is currently heading. It discusses visualizations for molecular structures, strategies for efficient display regarding image quality and frame rate, covers different aspects of level of detail and reviews visualizations illustrating the dynamic aspects of molecular simulation data. The survey concludes with an outlook on promising and important research topics to foster further success in the development of tools that help to reveal molecular secrets. Y1 - 2016 U6 - https://doi.org/10.1111/cgf.13072 VL - 36 IS - 8 SP - 178 EP - 204 ER - TY - BOOK A1 - Hege, Hans-Christian A1 - (Eds.), Konrad T1 - Visualization and Mathematics - Experiments, Simulations and Environments Y1 - 1997 SN - ISBN 3-540-61269-6 PB - Springer-Verlag, Berlin/Heidelberg ER - TY - JOUR A1 - Kramer, Tobias A1 - Noack, Matthias A1 - Baum, Daniel A1 - Hege, Hans-Christian A1 - Heller, Eric J. T1 - Homogeneous dust emission and jet structure near active cometary nuclei: the case of 67P/Churyumov-Gerasimenko N2 - We compute trajectories of dust grains starting from a homogeneous surface activity-profile on a irregularly shaped cometary nucleus. Despite the initially homogeneous dust distribution a collimation in jet-like structures becomes visible. The fine structure is caused by concave topographical features with similar bundles of normal vectors. The model incorporates accurately determined gravitational forces, rotation of the nucleus, and gas-dust interaction. Jet-like dust structures are obtained for a wide range of gas-dust interactions. For the comet 67P/Churyumov-Gerasimenko, we derive the global dust distribution around the nucleus and find several areas of agreement between the homogeneous dust emission model and the Rosetta observation of dust jets, including velocity-dependent bending of trajectories. Y1 - 2015 ER - TY - JOUR A1 - Krone, Michael A1 - Kozlíková, Barbora A1 - Lindow, Norbert A1 - Baaden, Marc A1 - Baum, Daniel A1 - Parulek, Julius A1 - Hege, Hans-Christian A1 - Viola, Ivan T1 - Visual Analysis of Biomolecular Cavities: State of the Art JF - Computer Graphics Forum N2 - In this report we review and structure the branch of molecular visualization that is concerned with the visual analysis of cavities in macromolecular protein structures. First the necessary background, the domain terminology, and the goals of analytical reasoning are introduced. Based on a comprehensive collection of relevant research works, we present a novel classification for cavity detection approaches and structure them into four distinct classes: grid-based, Voronoi-based, surface-based, and probe-based methods. The subclasses are then formed by their combinations. We match these approaches with corresponding visualization technologies starting with direct 3D visualization, followed with non-spatial visualization techniques that for example abstract the interactions between structures into a relational graph, straighten the cavity of interest to see its profile in one view, or aggregate the time sequence into a single contour plot. We also discuss the current state of methods for the visual analysis of cavities in dynamic data such as molecular dynamics simulations. Finally, we give an overview of the most common tools that are actively developed and used in the structural biology and biochemistry research. Our report is concluded by an outlook on future challenges in the field. Y1 - 2016 U6 - https://doi.org/10.1111/cgf.12928 SN - 1467-8659 VL - 35 IS - 3 SP - 527 EP - 551 ER - TY - JOUR A1 - Hermann, Gunter A1 - Pohl, Vincent A1 - Tremblay, Jean Christophe A1 - Paulus, Beate A1 - Hege, Hans-Christian A1 - Schild, Axel T1 - ORBKIT – A modular Python toolbox for cross-platform post-processing of quantum chemical wavefunction data JF - Journal of Computational Chemistry N2 - ORBKIT is a toolbox for postprocessing electronic structure calculations based on a highly modular and portable Python architecture. The program allows computing a multitude of electronic properties of molecular systems on arbitrary spatial grids from the basis set representation of its electronic wave function, as well as several grid-independent properties. The required data can be extracted directly from the standard output of a large number of quantum chemistry programs. ORBKIT can be used as a standalone program to determine standard quantities, for example, the electron density, molecular orbitals, and derivatives thereof. The cornerstone of ORBKIT is its modular structure. The existing basic functions can be arranged in an individual way and can be easily extended by user-written modules to determine any other derived quantity. ORBKIT offers multiple output formats that can be processed by common visualization tools (VMD, Molden, etc.). Additionally, ORBKIT offers routines to order molecular orbitals computed at different nuclear configurations according to their electronic character and to interpolate the wavefunction between these configurations. The program is open-source under GNU-LGPLv3 license and freely available at https://github.com/orbkit/orbkit/. This article provides an overview of ORBKIT with particular focus on its capabilities and applicability, and includes several example calculations. Y1 - 2016 U6 - https://doi.org/10.1002/jcc.24358 VL - 37 IS - 16 SP - 1511 EP - 1520 ER - TY - JOUR A1 - Goubergrits, Leonid A1 - Osman, Jan A1 - Mevert, Ricardo A1 - Kertzscher, Ulrich A1 - Pöthkow, Kai A1 - Hege, Hans-Christian T1 - Turbulence in blood damage modeling JF - The International Journal of Artificial Organs N2 - Purpose: To account for the impact of turbulence in blood damage modeling, a novel approach based on the generation of instantaneous flow fields from RANS simulations is proposed. Methods: Turbulent flow in a bileaflet mechanical heart valve was simulated using RANS-based (SST k-ω) flow solver using FLUENT 14.5. The calculated Reynolds shear stress (RSS) field is transformed into a set of divergence-free random vector fields representing turbulent velocity fluctuations using procedural noise functions. To consider the random path of the blood cells, instantaneous flow fields were computed for each time step by summation of RSS-based divergence-free random and mean velocity fields. Using those instantaneous flow fields, instantaneous pathlines and corresponding point-wise instantaneous shear stresses were calculated. For a comparison, averaged pathlines based on mean velocity field and respective viscous shear stresses together with RSS values were calculated. Finally, the blood damage index (hemolysis) was integrated along the averaged and instantaneous pathlines using a power law approach and then compared. Results: Using RSS in blood damage modeling without a correction factor overestimates damaging stress and thus the blood damage (hemolysis). Blood damage histograms based on both presented approaches differ. Conclusions: A novel approach to calculate blood damage without using RSS as a damaging parameter is established. The results of our numerical experiment support the hypothesis that the use of RSS as a damaging parameter should be avoided. Y1 - 2016 U6 - https://doi.org/10.5301/ijao.5000476 VL - 39 IS - 4 SP - 147 EP - 210 ER - TY - GEN A1 - Sieber, Moritz A1 - Kuhn, Alexander A1 - Hege, Hans-Christian A1 - Paschereit, C. Oliver A1 - Oberleithner, Kilian T1 - A Graphical Representation of the Spectral Proper Orthogonal Decomposition T2 - 68th Annual Meeting of the APS Division of Fluid Dynamics, Gallery of Fluid Motion, Nov 22-24, 2015, Boston, MA, USA. N2 - We consider the spectral proper orthogonal decomposition (SPOD) for experimental data of a turbulent swirling jet. This newly introduced method combines the advantages of spectral methods, such as Fourier decomposition or dynamic mode decomposition, with the energy-ranked proper orthogonal decomposition (POD). This poster visualizes how the modal energy spectrum transitions from the spectral purity of Fourier space to the sparsity of POD space. The transition is achieved by changing a single parameter – the width of the SPOD filter. Each dot in the 3D space corresponds to an SPOD mode pair, where the size and color indicates its spectral coherence. What we notice is that neither the Fourier nor the POD spectrum achieves a clear separation of the dynamic phenomena. Scanning through the graph from the front plane (Fourier) to the back plane (POD), we observe how three highly coherent SPOD modes emerge from the dispersed Fourier spectrum and later branch out into numerous POD modes. The spatial properties of these three individual SPOD modes are displayed in the back of the graph using line integral convolution colored by vorticity. The first two modes correspond to single-helical global instabilities that are well known for these flows. Their coexistence, however, has not been observed until now. The third mode is of double- helical shape and has not been observed so far. For this considered data set and many others, the SPOD is superior in identification of coherent structures in turbulent flows. Hopefully, it gives access to new fluid dynamic phenomena and enriches the available methods. Y1 - 2015 ER - TY - CHAP A1 - Jácome, Leonardo Agudo A1 - Eggeler, Gunter A1 - Pöthkow, Kai A1 - Paetsch, Olaf A1 - Hege, Hans-Christian T1 - Three-Dimensional Characterization of Superdislocation Interactions in the High Temperature and Low Stress Creep Regime of Ni-Base Superalloy Single Crystals T2 - Proceedings of CREEP 2015 – 13th International Conference on Creep and Fracture of Engineering Materials and Structures, May 31 – June 4, 2015, Toulouse, France N2 - Monocrystaline Ni-base superalloys are the material of choice for first row blades in jet engine gas turbines. Using a novel visualization tool for 3D reconstruction and visualization of dislocation line segments from stereo-pairs of scanning transmission electron microscopies, the superdislocation substructures in Ni-base superalloy LEK 94 (crept to ε = 26%) are characterized. Probable scenarios are discussed, how these dislocation substructures form. Y1 - 2015 SP - 16 EP - 17 ER - TY - GEN A1 - Bojarovski, Stefan A1 - Hege, Hans-Christian A1 - Lie, Han Cheng A1 - Weber, Marcus T1 - Topological analysis and visualization of scalar functions characterizing conformational transitions of molecules on multiple time-scales T2 - Shape Up 2015 - Exercises in Materials Geometry and Topology, 14-18 Sept. 2015, Berlin, Germany N2 - Molecular processes such as protein folding or ligand-receptor-binding can be understood by analyzing the free energy landscape. Those processes are often metastable, i.e. the molecular systems remain in basins around local minima of the free energy landscape, and in rare cases undergo gauche transitions between metastable states by passing saddle-points of this landscape. By discretizing the configuration space, this can be modeled as a discrete Markov process. One way to compute the transition rates between conformations of a molecular system is by utilizing Transition Path Theory and the concept of committor functions. A fundamental problem from the computational point of view is that many time-scales are involved, ranging from 10^(-14) sec for the fastest motion to 10^(-6) sec or more for conformation changes that cause biological effects. The goal of our work is to provide a better understanding of such transitions in configuration space on various time-scales by analyzing characteristic scalar functions topologically and geometrically. We are developing suitable visualization and interaction techniques to support our analysis. For example, we are analyzing a transition rate indicator function by computing and visualizing its Reeb graph together with the sets of molecular states corresponding to maxima of the transition rate indicator function. A particular challenge is the high dimensionality of the domain which does not allow for a straightforward visualization of the function. The computational topology approach to the analysis of the transition rate indicator functions for a molecular system allows to explore different time scales of the system by utilizing coarser or finer topological partitioning of the function. A specific goal is the development of tools for analyzing the hierarchy of these partitionings. This approach tackles the analysis of a complex and sparse dataset from a different angle than the well-known spectral analysis of Markov State Models. Y1 - 2015 ER - TY - CHAP A1 - Kozlikova, Barbora A1 - Krone, Michael A1 - Lindow, Norbert A1 - Falk, Martin A1 - Baaden, Marc A1 - Baum, Daniel A1 - Viola, Ivan A1 - Parulek, Julius A1 - Hege, Hans-Christian T1 - Visualization of Biomolecular Structures: State of the Art T2 - EuroVis 2015 STARS Proceedings N2 - Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on computerized geometric and visual representations of three-dimensional, complex, large, and time-varying molecular structures. The report presents a taxonomy that demonstrates which areas of molecular visualization have already been extensively investigated and where the field is currently heading. It discusses visualizations for molecular structures, strategies for efficient display regarding image quality and frame rate, covers different aspects of level of detail, and reviews visualizations illustrating the dynamic aspects of molecular simulation data. The report concludes with an outlook on promising and important research topics to enable further success in advancing the knowledge about interaction of molecular structures. Y1 - 2015 U6 - https://doi.org/10.2312/eurovisstar.20151112 SP - 61 EP - 81 ER - TY - JOUR A1 - Dercksen, Vincent J. A1 - Hege, Hans-Christian A1 - Oberlaender, Marcel T1 - The Filament Editor: An Interactive Software Environment for Visualization, Proof-Editing and Analysis of 3D Neuron Morphology JF - NeuroInformatics Y1 - 2014 U6 - https://doi.org/10.1007/s12021-013-9213-2 VL - 12 IS - 2 SP - 325 EP - 339 PB - Springer US ER - TY - CHAP A1 - Ritter, Zully A1 - Prohaska, Steffen A1 - Brand, R. A1 - Friedmann, A. A1 - Hege, Hans-Christian A1 - Goebbels, Jürgen A1 - Felsenberg, Dieter T1 - Osteocytes number and volume in osteoporotic and in healthy bone biopsies analysed using Synchrotron CT: a pilot study T2 - Proc. ISB 2011 Y1 - 2011 ER - TY - JOUR A1 - Kainmüller, Dagmar A1 - Lamecker, Hans A1 - Heller, Markus O. A1 - Weber, Britta A1 - Hege, Hans-Christian A1 - Zachow, Stefan T1 - Omnidirectional Displacements for Deformable Surfaces JF - Medical Image Analysis Y1 - 2013 U6 - https://doi.org/10.1016/j.media.2012.11.006 VL - 17 IS - 4 SP - 429 EP - 441 PB - Elsevier ER - TY - JOUR A1 - Pöthkow, Kai A1 - Hege, Hans-Christian T1 - Positional Uncertainty of Isocontours: Condition Analysis and Probabilistic Measures JF - IEEE Transactions on Visualization and Computer Graphics Y1 - 2011 U6 - https://doi.org/10.1109/TVCG.2010.247 VL - 17 IS - 10 SP - 1393 EP - 1406 ER - TY - JOUR A1 - Oberleithner, Kilian A1 - Sieber, Moritz A1 - Nayeri, Christian A1 - Paschereit, Christian A1 - Petz, Christoph A1 - Hege, Hans-Christian A1 - Noack, Bernd A1 - J. Wygnanski, Israel T1 - Three-dimensional Coherent Structures of the Swirling Jet Undergoing Vortex breakdown: Stability Analysis and Empirical Mode Construction JF - J. Fluid Mech. Y1 - 2011 U6 - https://doi.org/10.1017/jfm.2011.141 VL - 679 SP - 383 EP - 414 ER - TY - GEN A1 - Günther, David A1 - Reininghaus, Jan A1 - Prohaska, Steffen A1 - Weinkauf, Tino A1 - Hege, Hans-Christian ED - Peikert, Ronny ED - Hauser, Helwig ED - Carr, Hamish T1 - Efficient Computation of a Hierarchy of Discrete 3D Gradient Vector Fields T2 - Topological Methods in Data Analysis and Visualization II Y1 - 2012 U6 - https://doi.org/10.1007/978-3-642-23175-9_2 SP - 15 EP - 29 PB - Springer ER - TY - GEN A1 - Kasten, Jens A1 - Hotz, Ingrid A1 - Hege, Hans-Christian ED - Peikert, Ronald ED - Hauser, Helwig ED - Carr, Hamish ED - Fuchs, Raphael T1 - On the Elusive Concept of Lagrangian Coherent Structures T2 - Topological Methods in Data Analysis and Visualization II Y1 - 2012 U6 - https://doi.org/10.1007/978-3-642-23175-9_14 SP - 207 EP - 220 PB - Springer ER - TY - JOUR A1 - Andrae, Dirk A1 - Barth, Ingo A1 - Bredtmann, Timm A1 - Hege, Hans-Christian A1 - Manz, Jörn A1 - Marquardt, Falko A1 - Paulus, Beate T1 - Electronic Quantum Fluxes During Pericyclic Reactions Exemplified for the Cope Rearrangement of Semibullvalene JF - J. Phys. Chem. B Y1 - 2011 U6 - https://doi.org/10.1021/jp110365g VL - 115 IS - 18 SP - 5476 EP - 5483 ER - TY - CHAP A1 - Bindernagel, Matthias A1 - Kainmüller, Dagmar A1 - Seim, Heiko A1 - Lamecker, Hans A1 - Zachow, Stefan A1 - Hege, Hans-Christian T1 - An Articulated Statistical Shape Model of the Human Knee T2 - Bildverarbeitung für die Medizin 2011 Y1 - 2011 U6 - https://doi.org/10.1007/978-3-642-19335-4_14 SP - 59 EP - 63 PB - Springer ER - TY - CHAP A1 - Kuß, Anja A1 - Prohaska, Steffen A1 - Meyer, Björn A1 - Rybak, Jürgen A1 - Hege, Hans-Christian T1 - Ontology-Based Visualization of Hierarchical Neuroanatomical Structures T2 - Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine VCBM 2008 Y1 - 2008 SP - 177 EP - 184 ER - TY - JOUR A1 - Shi, Kuangyu A1 - Weinkauf, Tino A1 - Theisel, Holger A1 - Hege, Hans-Christian A1 - Seidel, Hans-Peter T1 - Visualizing Transport Structures of Time-Dependent Flow Fields JF - IEEE Computer Graphics and Applications Y1 - 2008 U6 - https://doi.org/10.1109/MCG.2008.106 SP - 24 EP - 35 ER - TY - CHAP A1 - von Funck, Wolfram A1 - Weinkauf, Tino A1 - Theisel, Holger A1 - Hege, Hans-Christian T1 - Smoke Surfaces: An Interactive Flow Visualization Technique Inspired by Real-World Flow Experiments T2 - IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization 2008) Y1 - 2008 U6 - https://doi.org/10.1109/TVCG.2008.163 VL - 14 IS - 6 SP - 1396 EP - 1403 ER - TY - CHAP A1 - Papazov, Chavdar A1 - Dercksen, Vincent J. A1 - Lamecker, Hans A1 - Hege, Hans-Christian T1 - Visualizing morphogenesis and growth by temporal interpolation of surface-based 3D atlases T2 - Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging Y1 - 2008 U6 - https://doi.org/10.1109/ISBI.2008.4541123 SP - 824 EP - 827 ER - TY - CHAP A1 - Goubergrits, Leonid A1 - Pöthke, Jens A1 - Petz, Christoph A1 - Hege, Hans-Christian A1 - Spuler, Andreas A1 - Kertzscher, Ulrich T1 - 3D Bildgebung von zerebralen Aneurysmen T2 - Bildverarbeitung für die Medizin Y1 - 2008 U6 - https://doi.org/10.1007/978-3-540-78640-5_31 SP - 153 EP - 157 ER - TY - CHAP A1 - Petz, Christoph A1 - Prohaska, Steffen A1 - Goubergrits, Leonid A1 - Kertzscher, Ulrich A1 - Hege, Hans-Christian T1 - Near-Wall Flow Visualization in Flattened Surface Neighborhoods T2 - Proc. Simulation and Visualization 2008 Y1 - 2008 UR - http://www.simvis.org/Tagung2008/sv-proceedings.html SP - 93 EP - 105 CY - Magdeburg, Germany ER - TY - CHAP A1 - Kainmüller, Dagmar A1 - Lamecker, Hans A1 - Zachow, Stefan A1 - Hege, Hans-Christian T1 - Coupling Deformable Models for Multi-object Segmentation T2 - Proc. Int. Symp. on Computational Models for Biomedical Simulation (ISBMS) Y1 - 2008 U6 - https://doi.org/10.1007/978-3-540-70521-5_8 SP - 69 EP - 78 ER - TY - CHAP A1 - Kainmüller, Dagmar A1 - Lamecker, Hans A1 - Zachow, Stefan A1 - Heller, Markus O. A1 - Hege, Hans-Christian T1 - Multi-Object Segmentation with Coupled Deformable Models T2 - Proc. Medical Image Understanding and Analysis Y1 - 2008 SP - 34 EP - 38 ER - TY - CHAP A1 - Dworzak, Jalda A1 - Lamecker, Hans A1 - von Berg, Jens A1 - Klinder, Tobias A1 - Lorenz, Cristian A1 - Kainmüller, Dagmar A1 - Seim, Heiko A1 - Hege, Hans-Christian A1 - Zachow, Stefan T1 - Towards model-based 3-D reconstruction of the human rib cage from radiographs T2 - Proc. 7. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC) Y1 - 2008 SP - 193 EP - 196 ER - TY - CHAP A1 - Seim, Heiko A1 - Kainmüller, Dagmar A1 - Heller, Markus O. A1 - Lamecker, Hans A1 - Zachow, Stefan A1 - Hege, Hans-Christian T1 - Automatic Segmentation of the Pelvic Bones from CT Data Based on a Statistical Shape Model T2 - Eurographics Workshop on Visual Computing for Biomedicine (VCBM) Y1 - 2008 SP - 93 EP - 100 CY - Delft, Netherlands ER - TY - JOUR A1 - Hege, Hans-Christian A1 - Manz, Jörn A1 - Marquardt, Falko A1 - Paulus, Beate A1 - Schild, Axel T1 - Electron Flux during Pericyclic Reactions in the Tunneling Limit: Quantum Simulation for Cyclooctatetraene JF - Chem. Phys Y1 - 2010 U6 - https://doi.org/10.1016/j.chemphys.2010.07.033 N1 - Festschrift in Chem. Phys. in honour of Professor Horst Koeppel VL - 376 IS - 1-3 SP - 46 EP - 55 ER - TY - GEN A1 - Bredtmann, Timm A1 - Marquardt, Falko A1 - Andrae, Dirk A1 - Barth, Ingo A1 - Hege, Hans-Christian A1 - Hoki, Kunihito A1 - Kenfack, Anatole A1 - Kono, Hirohiko A1 - Manz, Jörn A1 - Paulus, Beate T1 - Electronic and Nuclear Fluxes during Pericyclic Reactions: Quantum Simulations for the Cope Rearrangement of Semibullvalene Y1 - 2010 N1 - Abstract and Poster PB - International Symposium on Theoretical and Computational Chemistry, 28 Feb – 2 March, 2010, Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany ER - TY - GEN A1 - Bredtmann, Timm A1 - Marquardt, Falko A1 - Andrae, Dirk A1 - Barth, Ingo A1 - Hege, Hans-Christian A1 - Manz, Jörn A1 - Paulus, Beate T1 - Electronic and Nuclear Fluxes During Pericyclic Reactions: Quantum Simulations for the Cope Rearrangement of Semibullvalene Y1 - 2010 N1 - Abstract and Poster PB - CSTC 2010 - 17th Canadian Symposium on Theoretical Chemistry, July 25-30, 2010, Edmonton, Alberta, Canada ER - TY - JOUR A1 - Oberleithner, Kilian A1 - Sieber, Moritz A1 - Nayeri, Christian A1 - Paschereit, Christian A1 - Petz, Christoph A1 - Hege, Hans-Christian A1 - Noack, Bernd A1 - Wygnanski, Israel T1 - Self Excited Oscillations in Swirling Jets: Stability Analysis and Empirical Mode Construction JF - Bulletin of the American Physical Society Y1 - 2010 UR - http://meetings.aps.org/link/BAPS.2010.DFD.GE.8 N1 - 63rd Annual Meeting of the APS Division of Fluid Dynamics, November 21-23, 2010, Long Beach, CA VL - 55 IS - 16 SP - GE.00008 ER - TY - GEN A1 - Kasten, Jens A1 - Reininghaus, Jan A1 - Oberleithner, Kilian A1 - Hotz, Ingrid A1 - Noack, Bernd A1 - Hege, Hans-Christian T1 - Flow over a Cavity – Evolution of the Vortex Skeleton Y1 - 2010 PB - Visualization at 28th Annual Gallery of Fluid Motion exhibit, held at the 63th Annual Meeting of the American Physical Society, Division of Fluid Dynamics (Long Beach, CA, USA, November 21-23, 2010). ER - TY - JOUR A1 - Kasten, Jens A1 - Petz, Christoph A1 - Hotz, Ingrid A1 - Hege, Hans-Christian A1 - Noack, Bernd A1 - Tadmor, Gilead T1 - Lagrangian Feature Extraction of the Cylinder Wake JF - Physics of Fluids Y1 - 2010 U6 - https://doi.org/10.1063/1.3483220 VL - 22 IS - 9 SP - 091108 ER - TY - CHAP A1 - Weber, Britta A1 - Möller, Marit A1 - Verbavatz, Jean-Marc A1 - Baum, Daniel A1 - Hege, Hans-Christian A1 - Prohaska, Steffen T1 - Fast Tracing of Microtubule Centerlines in Electron Tomograms T2 - BioVis 2011 Abstracts, 1st IEEE Symposium on Biological Data Visualization Y1 - 2011 ER -