TY - JOUR A1 - Schütte, Christof A1 - Sikorski, Alexander A1 - Kresse, Jakob A1 - Weber, Marcus T1 - On-the-Fly Lifting of Coarse Reaction-Coordinate Paths to Full-Dimensional Transition Path Ensembles N2 - Effective dynamics on a low-dimensional collective-variable (CV) or latent space can be simulated far more cheaply than the underlying high-dimensional stochastic system, but exploiting such coarse predictions requires lifting: turning a coarse CV trajectory into dynamically consistent full-dimensional states and path ensembles, without relying on global sampling of invariant or conditional fiber measures. We present a local, on-the-fly lifting strategy based on guided full-system trajectories. First an effective model in CV space is used to obtain a coarse reference trajectory. Then, an ensemble of full-dimensional trajectories is generated from a guided version of the original dynamics, where the guidance steers the trajectory to track the CV reference path. Because guidance biases the path distribution, we correct it via pathwise Girsanov reweighting, yielding a correct-by-construction importance-sampling approximation of the conditional law of the uncontrolled dynamics. We further connect the approach to stochastic optimal control, clarifying how coarse models can inform variance-reducing guidance for rare-event quantities. Numerical experiments demonstrate that inexpensive coarse transition paths can be converted into realistic full-system transition pathways (including barrier crossings and detours) and can accelerate estimation of transition pathways and statistics while providing minimal bias through weighted ensembles. Y1 - 2026 U6 - https://doi.org/10.48550/arXiv.2603.23266 ER - TY - JOUR A1 - Villani, Paolo A1 - Andrés Arcones, Daniel A1 - Unger, Jörg F. A1 - Weiser, Martin T1 - Gaussian mixture models for model improvement N2 - Modeling complex physical systems such as they arise in civil engineering applications requires finding a trade-off between physical fidelity and practicality. Consequently, deviations of simulation from measurements are ubiquitous even after model calibration due to the model discrepancy, which may result from deliberate modeling decisions, ignorance, or lack of knowledge. If the mismatch between simulation and measurements are deemed unacceptable, the model has to be improved. Targeted model improvement is challenging due to a non-local impact of model discrepancies on measurements and the dependence on sensor configurations. Many approaches to model improvement, such as Bayesian calibration with additive mismatch terms, gray-box models, symbolic regression, or stochastic model updating, often lack interpretability, generalizability, physical consistency, or practical applicability. This paper introduces a non-intrusive approach to model discrepancy analysis using mixture models. Instead of directly modifying the model structure, the method maps sensor readings to clusters of physically meaningful parameters, automatically assigning sensor readings to parameter vector clusters. This mapping can reveal systematic discrepancies and model biases, guiding targeted, physics-based refinements by the modeler. The approach is formulated within a Bayesian framework, enabling the identification of parameter clusters and their assignments via the Expectation-Maximization (EM) algorithm. The methodology is demonstrated through numerical experiments, including an illustrative example and a real-world case study of heat transfer in a concrete bridge. Y1 - 2026 ER - TY - JOUR A1 - Wuttke, Ulrike A1 - Stockmann, Ralf A1 - Winkler, Alexander T1 - Podcasts als bibliothekarisches Handlungsfeld JF - B.I.T. online (BIT online) : Bibliothek, Information, Technologie Y1 - 2026 SN - 1616-2617 VL - 29 IS - 1 SP - 48 EP - 53 ER - TY - JOUR A1 - Mehrmann, Carolin A1 - Johny, Jacob A1 - Ebbinghaus, Petra A1 - Hammerschmidt, Martin A1 - Das, Ankita A1 - Wei, Xin A1 - Tesch, Marc F. A1 - Rabe, Martin T1 - Nano IR spectroscopy on Silicon-Supported Organic–Inorganic Hybrid Materials JF - Phys. Chem. Chem. Phys. Y1 - 2026 U6 - https://doi.org/10.1039/D5CP03815D PB - Royal Society of Chemistry (RSC) ER - TY - JOUR A1 - Farias-Basulto, Guillermo A1 - Mehlhop, Thede A1 - Otto, Nicolas J. A1 - Bertram, Tobias A1 - Jäger, Klaus A1 - Gall, Stefan A1 - Weinberger, Nikolaus A1 - Schlatmann, Rutger A1 - Lauermann, Iver A1 - Klenk, Reiner A1 - List-Kratochvil, Emil A1 - Kaufmann, Christian A. T1 - Improving Perovskite/CIGS Tandem Solar Cells for Higher Power Conversion Efficiency through Light Management and Bandgap Engineering JF - ACS Appl. Mater. Interfaces Y1 - 2025 U6 - https://doi.org/10.1021/acsami.5c15458 VL - 17 SP - 56250 ER - TY - JOUR A1 - Brence, Blaž A1 - Brummer, Josephine A1 - Dercksen, Vincent J. A1 - Özel, Mehmet Neset A1 - Kulkarni, Abhishek A1 - Wolterhoff, Neele A1 - Prohaska, Steffen A1 - Hiesinger, Peter Robin A1 - Baum, Daniel T1 - Semi-automatic geometrical reconstruction and analysis of filopodia dynamics in 4D two-photon microscopy images JF - BMC Bioinformatics N2 - Background: Filopodia are thin and dynamic membrane protrusions that play a crucial role in cell migration, axon guidance, and other processes where cells explore and interact with their surroundings. Historically, filopodial dynamics have been studied in great detail in 2D in cultured cells, and more recently in 3D culture as well as living brains. However, there is a lack of efficient tools to trace and track filopodia in 4D images of complex brain cells. Results: To address this issue, we have developed a semi-automatic workflow for tracing filopodia in 3D images and tracking the traced filopodia over time. The workflow was developed based on high-resolution data of photoreceptor axon terminals in the in vivo context of normal Drosophila brain development, but devised to be applicable to filopodia in any system, including at different temporal and spatial scales. In contrast to the pre-existing methods, our workflow relies solely on the original intensity images without the requirement for segmentation or complex preprocessing. The workflow was realized in C++ within the Amira software system and consists of two main parts, dataset pre-processing, and geometrical filopodia reconstruction, where each of the two parts comprises multiple steps. In this paper, we provide an extensive workflow description and demonstrate its versatility for two different axo-dendritic morphologies, R7 and Dm8 cells. Finally, we provide an analysis of the time requirements for user input and data processing. Conclusion: To facilitate simple application within Amira or other frameworks, we share the source code, which is available at https://github.com/zibamira/filopodia-tool. Y1 - 2026 U6 - https://doi.org/10.1186/s12859-026-06385-4 VL - 27 ER - TY - JOUR A1 - Fischbach, Jan David A1 - Betz, Fridtjof A1 - Rebholz, Lukas A1 - Garg, Puneet A1 - Frizyuk, Kristina A1 - Binkowski, Felix A1 - Burger, Sven A1 - Hammerschmidt, Martin A1 - Rockstuhl, Carsten T1 - Pole-Expansion of the T-Matrix Based on a Matrix-Valued AAA-Algorithm JF - ArXiV Y1 - 2026 U6 - https://doi.org/10.48550/arXiv.2602.18414 SP - arXiv:2602.18414 ER - TY - JOUR A1 - Krüger, Jan A1 - Dopslaff, Sven A1 - Manley, Phillip A1 - Bergmann, Detlef A1 - Köning, Rainer A1 - Dai, Gaoliang A1 - Hahm, Kai A1 - Schneider, Philipp-Immanuel A1 - Hammerschmidt, Martin A1 - Zschiedrich, Lin A1 - Bosse, Harald A1 - Bodermann, Bernd T1 - Photomask linewidth measurement comparison including an improved model-based through-focus measurement approach JF - Meas. Sci. Technol. Y1 - 2026 U6 - https://doi.org/10.1088/1361-6501/ae44bb VL - 37 SP - 095004 ER - TY - JOUR A1 - Gonnermann-Müller, Jana A1 - Haase, Jennifer A1 - Leins, Nicolas A1 - Igel, Moritz A1 - Fackeldey, Konstantin A1 - Pokutta, Sebastian T1 - FACET: Multi-Agent AI Supporting Teachers in Scaling Differentiated Learning for Diverse Students JF - arXiv N2 - Classrooms are becoming increasingly heterogeneous, comprising learners with diverse performance and motivation levels, language proficiencies, and learning differences such as dyslexia and ADHD. While teachers recognize the need for differentiated instruction, growing workloads create substantial barriers, making differentiated instruction an ideal that is often unrealized in practice. Current AI educational tools, which promise differentiated materials, are predominantly student-facing and performance-centric, ignoring other aspects that shape learning outcomes. We introduce FACET, a teacher-facing multi-agent framework designed to address these gaps by supporting differentiation that accounts for motivation, performance, and learning differences. Developed with educational stakeholders from the outset, the framework coordinates four specialized agents, including learner simulation, diagnostic assessment, material generation, and evaluation within a teacher-in-the-loop design. School principals (N = 30) shaped system requirements through participatory workshops, while in-service K-12 teachers (N = 70) evaluated material quality. Mixed-methods evaluation demonstrates strong perceived value for inclusive differentiation. Practitioners emphasized both the urgent need arising from classroom heterogeneity and the importance of maintaining pedagogical autonomy as a prerequisite for adoption. We discuss implications for future school deployment and outline partnerships for longitudinal classroom implementation. Y1 - 2026 U6 - https://doi.org/https://arxiv.org/abs/2601.22788 ER - TY - JOUR A1 - Raya-Moreno, Martí A1 - Dasch, Noah Alexy A1 - Farahani, Nasrin A1 - Gonzalez Oliva, Ignacio A1 - Gulans, Andris A1 - Hossain, Manoar A1 - Kleine, Hannah A1 - Kuban, Martin A1 - Lubeck, Sven A1 - Maurer, Benedikt A1 - Pavone, Pasquale A1 - Peschel, Fabian A1 - Popova-Gorelova, Daria A1 - Qiao, Lu A1 - Richter, Elias A1 - Rigamonti, Santiago A1 - Rodrigues Pelá, Ronaldo A1 - Sinha, Kshitij A1 - Speckhard, Daniel T. A1 - Tillack, Sebastian A1 - Tumakov, Dmitry A1 - Hong, Seokhyun A1 - Uzulis, Janis A1 - Voiculescu, Mara A1 - Vona, Cecilia A1 - Yang, Mao A1 - Draxl, Claudia T1 - An exciting approach to theoretical spectroscopy Y1 - 2026 ER - TY - JOUR A1 - Qiao, Lu A1 - Rodrigues Pelá, Ronaldo A1 - Draxl, Claudia T1 - First-principles approach to ultrafast pump-probe spectroscopy in solids Y1 - 2026 ER - TY - JOUR A1 - Rong, Guoyang A1 - Chen, Ying A1 - Koch, Thorsten A1 - Honda, Keisuke T1 - Assessing data quality in citation analysis: A case study of web of science and Crossref JF - Journal of Informetrics Y1 - 2026 U6 - https://doi.org/10.1016/j.joi.2026.101775 SN - 1751-1577 VL - 20 IS - 1 PB - Elsevier BV ER - TY - JOUR A1 - Hadjidimitriou, Natalia Selini A1 - Koch, Thorsten A1 - Lippi, Marco A1 - Petkovic, Milena A1 - Mamei, Marco T1 - Spatial analysis of COVID-19 and the Russia–Ukraine war impacts on natural gas flows using statistical and machine learning models JF - World Wide Web Y1 - 2026 U6 - https://doi.org/https://doi.org/10.1007/s11280-025-01402-7 SN - 1386-145X VL - 29 IS - 2 PB - Springer Science and Business Media LLC ER - TY - JOUR A1 - Ngokingha Tchouto, Mireille A1 - Mehl, Julia A1 - Khomeijani Farahani, Saeed A1 - Baum, Daniel A1 - Duda, Georg T1 - Novel image registration approach for combining 2D Osterix and collagen bundles images with 3D µCT JF - Journal of Bone and Mineral Research Y1 - 2026 U6 - https://doi.org/10.1093/jbmrpl/ziag009 VL - 10 IS - 3 ER - TY - JOUR A1 - Zimper, Sebastian A1 - Djurdjevac, Ana A1 - Hartmann, Carsten A1 - Schütte, Christof A1 - Conrad, Natasa Djurdjevac T1 - Mean-field optimal control with stochastic leaders N2 - We consider interacting agent systems with a large number of stochastic agents (or particles) influenced by a fixed number of external stochastic lead agents. Such examples arise, for example in models of opinion dynamics, where a small number of leaders (influencers) can steer the behaviour of a large population of followers. In this context, we study a partial mean-field limit where the number of followers tends to infinity, while the number of leaders stays constant. The partial mean-field limit dynamics is then given by a McKean-Vlasov stochastic differential equation (SDE) for the followers, coupled to a controlled Itô-SDE governing the dynamics of the lead agents. For a given cost functional that the lead agents seek to minimise, we show that the unique optimal control of the finite agent system convergences to the optimal control of the limiting system. This establishes that the low-dimensional control of the partial (mean-field) system provides an effective approximation for controlling the high-dimensional finite agent system. In addition, we propose a stochastic gradient descent algorithm that can efficiently approximate the mean-field control. Our theoretical results are illustrated on opinion dynamics model with lead agents, where the control objective is to drive the followers to reach consensus in finite time. Y1 - 2025 ER - TY - JOUR A1 - Kresse, Jakob A1 - Sikorski, Alexander A1 - Chewle, Surahit A1 - Sunkara, Vikram A1 - Weber, Marcus T1 - Revealing the Atomistic Mechanism of Rare Events in Molecular Dynamics JF - Journal of Chemical Theory and Computation N2 - Interpretable reaction coordinates are essential for understanding rare conformational transitions in molecular dynamics. The Atomistic Mechanism Of Rare Events in Molecular Dynamics (AMORE-MD) framework enhances interpretability of deep-learned reaction coordinates by connecting them to atomistic mechanisms, without requiring any a priori knowledge of collective variables, pathways, or endpoints. Here, AMORE-MD employs the ISOKANN algorithm to learn a neural membership function χ representing the dominant slow process, from which transition pathways are reconstructed as minimum-energy paths aligned with the gradient of χ, and atomic contributions are quantified through gradient-based sensitivity analysis. Iterative enhanced sampling further enriches transition regions and improves coverage of rare events enabling recovery of known mechanisms and chemically interpretable structural rearrangements at atomic resolution for the Müller-Brown potential, alanine dipeptide, and the elastin-derived hexapeptide VGVAPG. Y1 - 2026 U6 - https://doi.org/10.1021/acs.jctc.5c01906 VL - 22 IS - 5 SP - 2380 EP - 2389 ER - TY - JOUR A1 - Hartmann, Carsten A1 - Jöster, Annika A1 - Schütte, Christof A1 - Sikorski, Alexander A1 - Weber, Marcus T1 - Importance sampling of unbounded random stopping times: computing committor functions and exit rates without reweighting N2 - Rare events in molecular dynamics are often related to noise-induced transitions between different macroscopic states (e.g., in protein folding). A common feature of these rare transitions is that they happen on timescales that are on average exponentially long compared to the characteristic timescale of the system, with waiting time distributions that have (sub)exponential tails and infinite support. As a result, sampling such rare events can lead to trajectories that can be become arbitrarily long, with not too low probability, which makes the reweighting of such trajectories a real challenge. Here, we discuss rare event simulation by importance sampling from a variational perspective, with a focus on applications in molecular dynamics, in particular the computation of committor functions. The idea is to design importance sampling schemes that (a) reduce the variance of a rare event estimator while controlling the average length of the trajectories and (b) that do not require the reweighting of possibly very long trajectories. In doing so, we study different stochastic control formulations for committor and mean first exit times, which we compare both from a theoretical and a computational point of view, including numerical studies of some benchmark examples. Y1 - 2026 ER - TY - JOUR A1 - Abou Hamdan, Loubnan A1 - Jana, Aloke A1 - Colom, Rémi A1 - Aboujoussef, Nour A1 - Carlson, Cooper A1 - Overvig, Adam A1 - Binkowski, Felix A1 - Burger, Sven A1 - Genevet, Patrice T1 - A Complex-Frequency Framework for Kerker Unidirectionality in Photonic Resonators Y1 - 2026 U6 - https://doi.org/10.21203/rs.3.rs-8444305/v1 ER - TY - JOUR A1 - Wehlitz, Nathalie A1 - Pavliotis, Grigorios A1 - Schütte, Christof A1 - Winkelmann, Stefanie T1 - Data-driven Reduction of Transfer Operators for Particle Clustering Dynamics N2 - We develop an operator-based framework to coarse-grain interacting particle systems that exhibit clustering dynamics. Starting from the particle-based transfer operator, we first construct a sequence of reduced representations: the operator is projected onto concentrations and then further reduced by representing the concentration dynamics on a geometric low-dimensional manifold and an adapted finite-state discretization. The resulting coarse-grained transfer operator is finally estimated from dynamical simulation data by inferring the transition probabilities between the Markov states. Applied to systems with multichromatic and Morse interaction potentials, the reduced model reproduces key features of the clustering process, including transitions between cluster configurations and the emergence of metastable states. Spectral analysis and transition-path analysis of the estimated operator reveal implied time scales and dominant transition pathways, providing an interpretable and efficient description of particle-clustering dynamics. Y1 - 2026 ER - TY - JOUR A1 - Akhyar, Fatima-Zahrae A1 - Zhang, Wei A1 - Stoltz, Gabriel A1 - Schütte, Christof T1 - Generative modeling of conditional probability distributions on the level-sets of collective variables N2 - Given a probability distribution $\mu$ in $\mathbb{R}^d$ represented by data, we study in this paper the generative modeling of its conditional probability distributions on the level-sets of a collective variable $\xi: \mathbb{R}^d \rightarrow \mathbb{R}^k$, where $1 \le k