Dokument-ID Dokumenttyp Verfasser/Autoren Herausgeber Haupttitel Abstract Auflage Verlagsort Verlag Erscheinungsjahr Seitenzahl Schriftenreihe Titel Schriftenreihe Bandzahl ISBN Quelle der Hochschulschrift Konferenzname Quelle:Titel Quelle:Jahrgang Quelle:Heftnummer Quelle:Erste Seite Quelle:Letzte Seite URN DOI Abteilungen OPUS4-6648 Masterarbeit / Diplomarbeit Eifler, Leon Mixed-Integer Programming for Clustering in Non-reversible Markov Processes The topic of this thesis is the examination of an optimization model which stems from the clustering process of non-reversible markov processes. We introduce the cycle clustering problem und formulate it as a mixed integer program (MIP). We prove that this problem is N P-hard and discuss polytopal aspects such as facets and dimension. The focus of this thesis is the development of solving methods for this clustering problem. We develop problem specific primal heuristics, as well as separation methods and an approximation algorithm. These techniques are implemented in practice as an application for the MIP solver SCIP. Our computational experiments show that these solving methods result in an average speedup of ×4 compared to generic solvers and that our application is able to solve more instances to optimality within the given time limit of one hour. 2017 74 urn:nbn:de:0297-zib-66486 Mathematical Optimization OPUS4-8333 misc Lindner, Niels; van Lieshout, Rolf Benders Decomposition for the Periodic Event Scheduling Problem The Periodic Event Scheduling Problem (PESP) is the central mathematical model behind the optimization of periodic timetables in public transport. We apply Benders decomposition to the incidence-based MIP formulation of PESP. The resulting formulation exhibits particularly nice features: The subproblem is a minimum cost network flow problem, and feasibility cuts are equivalent to the well-known cycle inequalities by Odijk. We integrate the Benders approach into a branch-and-cut framework, and assess the performance of this method on instances derived from the benchmarking library PESPlib. 2021 urn:nbn:de:0297-zib-83338 10.1007/978-3-031-08623-6_43 Network Optimization OPUS4-6848 misc Tesch, Alexander A Polyhedral Study of Event-Based Models for the Resource-Constrained Project Scheduling Problem We consider event-based Mixed-Integer Programming (MIP) models for the Resource-Constrained Project Scheduling Problem (RCPSP) that represent an alternative to the common time-indexed model (DDT) of Pritsker et al. (1969) for the case where the underlying time horizon is large or job processing times are subject to huge variations. In contrast to the time-indexed model, the size of event-based models does not depend on the time horizon. For two event-based formulations OOE and SEE of Koné et al. (2011) we present new valid inequalities that dominate the original formulation. Additionally, we introduce a new event-based model: the Interval Event-Based Model (IEE). We deduce linear transformations between all three models that yield the strict domination order IEE > SEE > OOE for their linear programming (LP) relaxations, meaning that IEE has the strongest linear relaxation among the event-based models. We further show that the popular DDT formulation can be retrieved from IEE by certain polyhedral operations, thus giving a unifying view on a complete branch of MIP formulations for the RCPSP. In addition, we analyze the computational performance of all presented models on test instances of the PSPLIB (Kolisch and Sprecher 1997). 2018 urn:nbn:de:0297-zib-68485 Mathematical Optimization OPUS4-6035 misc Witzig, Jakob; Beckenbach, Isabel; Eifler, Leon; Fackeldey, Konstantin; Gleixner, Ambros; Grever, Andreas; Weber, Marcus Mixed-Integer Programming for Cycle Detection in Non-reversible Markov Processes In this paper, we present a new, optimization-based method to exhibit cyclic behavior in non-reversible stochastic processes. While our method is general, it is strongly motivated by discrete simulations of ordinary differential equations representing non-reversible biological processes, in particular molecular simulations. Here, the discrete time steps of the simulation are often very small compared to the time scale of interest, i.e., of the whole process. In this setting, the detection of a global cyclic behavior of the process becomes difficult because transitions between individual states may appear almost reversible on the small time scale of the simulation. We address this difficulty using a mixed-integer programming model that allows us to compute a cycle of clusters with maximum net flow, i.e., large forward and small backward probability. For a synthetic genetic regulatory network consisting of a ring-oscillator with three genes, we show that this approach can detect the most productive overall cycle, outperforming classical spectral analysis methods. Our method applies to general non-equilibrium steady state systems such as catalytic reactions, for which the objective value computes the effectiveness of the catalyst. 2016 urn:nbn:de:0297-zib-60353 10.1137/16M1091162 Numerical Mathematics OPUS4-6029 Wissenschaftlicher Artikel Witzig, Jakob; Beckenbach, Isabel; Eifler, Leon; Fackeldey, Konstantin; Gleixner, Ambros; Grever, Andreas; Weber, Marcus Mixed-Integer Programming for Cycle Detection in Non-reversible Markov Processes In this paper, we present a new, optimization-based method to exhibit cyclic behavior in non-reversible stochastic processes. While our method is general, it is strongly motivated by discrete simulations of ordinary differential equations representing non-reversible biological processes, in particular molecular simulations. Here, the discrete time steps of the simulation are often very small compared to the time scale of interest, i.e., of the whole process. In this setting, the detection of a global cyclic behavior of the process becomes difficult because transitions between individual states may appear almost reversible on the small time scale of the simulation. We address this difficulty using a mixed-integer programming model that allows us to compute a cycle of clusters with maximum net flow, i.e., large forward and small backward probability. For a synthetic genetic regulatory network consisting of a ring-oscillator with three genes, we show that this approach can detect the most productive overall cycle, outperforming classical spectral analysis methods. Our method applies to general non-equilibrium steady state systems such as catalytic reactions, for which the objective value computes the effectiveness of the catalyst. 2018 17 Multiscale Modeling and Simulation 16 1 248 265 10.1137/16M1091162 Numerical Mathematics OPUS4-9230 misc Lindner, Niels; Liebchen, Christian Incremental Heuristics for Periodic Timetabling We present incremental heuristics for the Periodic Event Scheduling Problem (PESP), the standard mathematical tool to optimize periodic timetables in public transport. The core of our method is to solve successively larger subinstances making use of previously found solutions. Introducing the technical notion of free stratifications, we formulate a general scheme for incremental heuristics for PESP. More practically, we use line and station information to create heuristics that add lines or stations one by one, and we evaluate these heuristics on instances of the benchmarking library PESPlib. This approach is indeed viable, and leads to new incumbent solutions for six PESPlib instances. 2023 urn:nbn:de:0297-zib-92309 Network Optimization OPUS4-9231 misc Bortoletto, Enrico; Lindner, Niels Scaling and Rounding Periodic Event Scheduling Instances to Different Period Times The Periodic Event Scheduling Problem (PESP) is a notoriously hard combinatorial optimization problem, essential for the design of periodic timetables in public transportation. The coefficients of the integer variables in the standard mixed integer linear programming formulations of PESP are the period time, e.g., 60 for a horizon of one hour with a resolution of one minute. In many application scenarios, lines with different frequencies have to be scheduled, leading to period times with many divisors. It then seems natural to consider derived instances, where the period time is a divisor of the original one, thereby smaller, and bounds are scaled and rounded accordingly. To this end, we identify two rounding schemes: wide and tight. We then discuss the approximation performance of both strategies, in theory and practice. 2023 urn:nbn:de:0297-zib-92315 Network Optimization OPUS4-9115 misc Lindner, Niels; Masing, Berenike On the Split Closure of the Periodic Timetabling Polytope The Periodic Event Scheduling Problem (PESP) is the central mathematical tool for periodic timetable optimization in public transport. PESP can be formulated in several ways as a mixed-integer linear program with typically general integer variables. We investigate the split closure of these formulations and show that split inequalities are identical with the recently introduced flip inequalities. While split inequalities are a general mixed-integer programming technique, flip inequalities are defined in purely combinatorial terms, namely cycles and arc sets of the digraph underlying the PESP instance. It is known that flip inequalities can be separated in pseudo-polynomial time. We prove that this is best possible unless P $=$ NP, but also observe that the complexity becomes linear-time if the cycle defining the flip inequality is fixed. Moreover, introducing mixed-integer-compatible maps, we compare the split closures of different formulations, and show that reformulation or binarization by subdivision do not lead to stronger split closures. Finally, we estimate computationally how much of the optimality gap of the instances of the benchmark library PESPlib can be closed exclusively by split cuts, and provide better dual bounds for five instances. 2023 urn:nbn:de:0297-zib-91156 Network Optimization OPUS4-9326 Dissertation Turner, Mark Cutting Plane Selection for Mixed-Integer Linear Programming Mixed-Integer Linear Programming (MILP) is a ubiquitous and practical modelling paradigm that is essential for optimising a broad range of real-world systems. The backbone of all modern MILP solvers is the branch-and-cut algorithm, which is a hybrid of the branch-and-bound and cutting planes algorithms. Cutting planes (cuts) are linear inequalities that tighten the relaxation of a MILP. While a lot of research has gone into deriving valid cuts for MILPs, less emphasis has been put on determining which cuts to select. Cuts in general are generated in rounds, and a subset of the generated cuts must be added to the relaxation. The decision on which subset of cuts to add is called cut selection. This is a crucial task since adding too many cuts makes the relaxation large and slow to optimise over. Conversely, adding too few cuts results in an insufficiently tightened relaxation, and more relaxations need to be enumerated. To further emphasise the difficulty, the effectiveness of an applied cut is both dependent on the other applied cuts, and the state of the MILP solver. In this thesis, we present theoretical results on the importance and difficulty of cut selection, as well as practical results that use cut selection to improve general MILP solver performance. Improving general MILP solver performance is of great importance for practitioners and has many runoff effects. Reducing the solve time of currently solved systems can directly improve efficiency within the application area. In addition, improved performance enables larger systems to be modelled and optimised, and MILP to be used in areas where it was previously impractical due to time restrictions. Each chapter of this thesis corresponds to a publication on cut selection, where the contributions of this thesis can naturally be divided into four components. The first two components are motivated by instance-dependent performance. In practice, for each subroutine, including cut selection, MILP solvers have adjustable parameters with hard-coded default values. It is ultimately unrealistic to expect these default values to perform well for every instance. Rather, it would be ideal if the parameters were dependent on the given instance. To show this motivation is well founded, we first introduce a family of parametric MILP instances and cuts to showcase worst-case performance of cut selection for any fixed parameter value. We then introduce a graph neural network architecture and reinforcement learning framework for learning instance-dependent cut scoring parameters. In the following component, we formalise language for determining if a cut has theoretical usefulness from a polyhedral point of view in relation to other cuts. In addition, to overcome issues of infeasible projections and dual degeneracy, we introduce analytic center based distance measures. We then construct a lightweight multi-output regression model that predicts relative solver performance of an instance for a set of distance measures. The final two components are motivated by general MILP solver improvement via cut selection. Such improvement was shown to be possible, albeit difficult to achieve, by the first half of this thesis. We relate branch-and-bound and cuts through their underlying disjunctions. Using a history of previously computed Gomory mixed-integer cuts, we reduce the solve time of SCIP over the 67% of affected MIPLIB 2017 instances by 4%. In the final component, we introduce new cut scoring measures and filtering methods based on information from other MILP solving processes. The new cut selection techniques reduce the solve time of SCIP over the 97% of affected MIPLIB 2017 instances by 5%. 2024 Applied Algorithmic Intelligence Methods