@inproceedings{GladilinZachowDeuflhardetal.2001, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {Virtual Fibers: A Robust Approach for Muscle Simulation}, booktitle = {IX Mediterranean Conference on Medical and Biological Engineering and Computing (MEDICON)}, address = {Pula, Croatia}, pages = {961 -- 964}, year = {2001}, language = {en} } @inproceedings{GladilinZachowDeuflhardetal.2001, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {Validierung eines linear elastischen Modells f{\"u}r die Weichgewebesimulation in der Mund-Kiefer-Gesichtschirurgie}, booktitle = {Bildverarbeitung f{\"u}r die Medizin (BVM)}, address = {L{\"u}beck, Germany}, pages = {57 -- 61}, year = {2001}, language = {en} } @inproceedings{GladilinZachowDeuflhardetal.2003, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {Realistic prediction of individual facial emotion expressions for craniofacial surgery simulations}, volume = {5029}, booktitle = {Proc. SPIE medical Imaging 2003}, editor = {Galloway, Robert}, address = {San Diego, CA, USA}, doi = {10.1117/12.479584}, pages = {520 -- 527}, year = {2003}, language = {en} } @inproceedings{GladilinZachowDeuflhardetal.2003, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {On constitutive modeling of soft tissue for the long-term prediction of cranio-maxillofacial surgery outcome}, volume = {1256}, booktitle = {International Congress Series, CARS2003, Computer Assisted Radiology and Surgery, Proceedings of the 17th International Congress and Exhibition}, doi = {10.1016/S0531-5131(03)00500-4}, pages = {343 -- 348}, year = {2003}, language = {en} } @inproceedings{LameckerSeebassHegeetal.2004, author = {Lamecker, Hans and Seebaß, Martin and Hege, Hans-Christian and Deuflhard, Peter}, title = {A 3D statistical shape model of the pelvic bone for segmentation}, booktitle = {Proceedings of SPIE - Volume 5370 Medical Imaging 2004}, editor = {Fitzpatrick, J. and Sonka, Milan}, doi = {10.1117/12.534145}, pages = {1341 -- 1351}, year = {2004}, language = {en} } @article{GladilinZachowDeuflhardetal.2004, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {Anatomy- and physics-based facial animation for craniofacial surgery simulations}, volume = {42(2)}, journal = {Med Biol Eng Comput.}, doi = {10.1007/BF02344627}, pages = {167 -- 170}, year = {2004}, language = {en} } @inproceedings{ZachowGladilinHegeetal.2002, author = {Zachow, Stefan and Gladilin, Evgeny and Hege, Hans-Christian and Deuflhard, Peter}, title = {Towards Patient Specific, Anatomy Based Simulation of Facial Mimics for Surgical Nerve Rehabilitation}, booktitle = {Computer Assisted Radiology and Surgery (CARS)}, publisher = {Springer Verlag}, pages = {3 -- 6}, year = {2002}, language = {en} } @inproceedings{ZachowErdmannHegeetal.2004, author = {Zachow, Stefan and Erdmann, Bodo and Hege, Hans-Christian and Deuflhard, Peter}, title = {Advances in 3D osteotomy planning with 3D soft tissue prediction}, booktitle = {Proc. 2nd International Symposium on Computer Aided Surgery around the Head, Abstract}, address = {Bern}, pages = {31}, year = {2004}, language = {en} } @inproceedings{GladilinZachowDeuflhardetal.2002, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {Adaptive Nonlinear Elastic FEM for Realistic Prediction of Soft Tissue in Craniofacial Surgery Simulations}, volume = {4681}, booktitle = {Proc. SPIE Medical Imaging 2002}, editor = {K. Mun, Seong}, address = {San Diego, USA}, doi = {10.1117/12.466906}, pages = {1 -- 8}, year = {2002}, language = {en} } @inproceedings{GladilinZachowDeuflhardetal.2002, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {Shape-based Modeling Approach for the Estimation of Individual Facial Mimics in Craniofacial Surgery Planning}, volume = {4681}, booktitle = {Proc. SPIE Medical Imaging 2002: Visualization, Image-Guided Procedures, and Display}, editor = {Mun, Seong}, address = {San Diego, USA target}, pages = {242 -- 248}, year = {2002}, language = {en} } @article{ZachowHegeDeuflhard2006, author = {Zachow, Stefan and Hege, Hans-Christian and Deuflhard, Peter}, title = {Computer assisted planning in cranio-maxillofacial surgery}, volume = {14(1)}, journal = {Journal of Computing and Information Technology}, pages = {53 -- 64}, year = {2006}, language = {en} } @inproceedings{ZachowGladilinHegeetal.2000, author = {Zachow, Stefan and Gladilin, Evgeny and Hege, Hans-Christian and Deuflhard, Peter}, title = {Finite-Element Simulation of Soft Tissue Deformation}, booktitle = {Computer Assisted Radiology and Surgey (CARS)}, publisher = {Elsevier Science B.V.}, pages = {23 -- 28}, year = {2000}, language = {en} } @inproceedings{DeuflhardHegeSeebass2000, author = {Deuflhard, Peter and Hege, Hans-Christian and Seebaß, Martin}, title = {Progress Towards a Combined MRI/Hyperthermia System}, booktitle = {Proceedings Second International Congress HIGH CARE 2000}, address = {Bochum}, year = {2000}, language = {en} } @inproceedings{SeebassStallingZoeckleretal.1997, author = {Seebaß, Martin and Stalling, Detlev and Z{\"o}ckler, Malte and Hege, Hans-Christian and Wust, Peter and Felix, Roland and Deuflhard, Peter}, title = {Surface Mesh Generation for Numerical Simulations of Hyperthermia Treatments}, booktitle = {Proceedings of the 16th Annual Meeting of the European Society for Hyperthermic Oncology (ESHO-97)}, pages = {146}, year = {1997}, language = {en} } @inproceedings{DeuflhardSeebassStallingetal.1997, author = {Deuflhard, Peter and Seebaß, Martin and Stalling, Detlev and Beck, Rudolf and Hege, Hans-Christian}, title = {Hyperthermia Treatment Planning in Clinical Therapy}, booktitle = {Computational Physics, Chemistry and Biology (Proceedings of the 15th IMACS World Congress 1997 on Scientific Computation 3, Modelling and Applied Mathematics)}, editor = {Sydow, Achim}, publisher = {Wissenschaft und Technik Verlag}, pages = {9 -- 17}, year = {1997}, language = {en} } @inproceedings{NadobnyWustStallingetal.1997, author = {Nadobny, Jacek and Wust, Peter and Stalling, Detlev and Hege, Hans-Christian and Deuflhard, Peter and Felix, Roland}, title = {A Quantitative Comparison Between VSIE and the FDTD Method Using Electrically Equivalent Patient and Antenna Models}, booktitle = {Proceedings of 16th Annual Meeting of the European Society for Hyperthermic Oncology ESHO-97}, address = {Berlin, Germany}, pages = {145}, year = {1997}, language = {en} } @inproceedings{WustNadobnyGellermannetal.1997, author = {Wust, Peter and Nadobny, Jacek and Gellermann, Johanna and Seebaß, Martin and Stalling, Detlev and Hege, Hans-Christian and Deuflhard, Peter and Felix, Roland}, title = {Patient Models and Algorithms for Hyperthermia Planning}, booktitle = {Proceedings of the 16th Annual Meeting of the European Society for Hyperthermic Oncology ESHO-97}, year = {1997}, language = {en} } @incollection{BeckDeuflhardHegeetal.1996, author = {Beck, Rudolf and Deuflhard, Peter and Hege, Hans-Christian and Seebaß, Martin and Stalling, Detlev}, title = {Numerical Algorithms and Visualization in Medical Treatment Planning}, booktitle = {Visualization and Mathematics 1997}, editor = {Hege, Hans-Christian and Polthier, Konrad}, publisher = {Springer, Heidelberg}, pages = {303 -- 328}, year = {1996}, language = {en} } @inproceedings{BeckHegeSeebassetal.1996, author = {Beck, Rudolf and Hege, Hans-Christian and Seebaß, Martin and Wust, Peter and Deuflhard, Peter and Felix, Roland}, title = {Adaptive Finite Element Codes for Numerical Calculations in Hyperthermia Treatment Planning}, volume = {2}, booktitle = {Proceedings of the 17th Congress on Hyperthermic Oncology}, address = {Rome, Italy}, pages = {515 -- 517}, year = {1996}, language = {en} } @article{NadobnyWustSeebassetal.1996, author = {Nadobny, Jacek and Wust, Peter and Seebaß, Martin and Deuflhard, Peter and Felix, Roland}, title = {A Volume Surface Integral Equation Method for Solving Maxwell's Equations in Electrically Inhomogeneous Media Using Tetrahedral Grids}, volume = {44}, journal = {IEEE Transactions Microwave Theory Techn.}, number = {4}, doi = {10.1109/22.491022}, pages = {543 -- 554}, year = {1996}, language = {en} } @inproceedings{NadobnyWustWlodarczyketal.1996, author = {Nadobny, Jacek and Wust, Peter and Wlodarczyk, Waldemar and Seebaß, Martin and Deuflhard, Peter and M{\"o}nich, Gerhard and Felix, Roland}, title = {Simulation Studies for Combination of Hyperthermia and Magnetic Resonance Systems}, volume = {2}, booktitle = {Proceedings of the 17th Congress on Hyperthermic Oncology}, address = {Rome, Italy}, pages = {549 -- 551}, year = {1996}, language = {en} } @inproceedings{SeebassStallingNadobnyetal.1996, author = {Seebaß, Martin and Stalling, Detlev and Nadobny, Jacek and Wust, Peter and Felix, Roland and Deuflhard, Peter}, title = {Three-Dimensional Finite Elements Mesh Generation for Numerical Simulations of Hyperthermia Treatments}, volume = {2}, booktitle = {Proceedings of the 17th Congress on Hyperthermic Oncology}, address = {Rome, Italy}, pages = {547 -- 548}, year = {1996}, language = {en} } @inproceedings{StallingSeebassHegeetal.1996, author = {Stalling, Detlev and Seebaß, Martin and Hege, Hans-Christian and Wust, Peter and Deuflhard, Peter and Felix, Roland}, title = {HyperPlan - an Integrated System for Treatment Planning in Regional Hyperthermia}, volume = {2}, booktitle = {Proceedings of the 17th Congress on Hyperthermic Oncology}, address = {Rome, Italy}, pages = {552 -- 554}, year = {1996}, language = {en} } @article{WustSeebassNadobnyetal.1996, author = {Wust, Peter and Seebaß, Martin and Nadobny, Jacek and Deuflhard, Peter and M{\"o}nich, Gerhard and Felix, Roland}, title = {Simulation Studies Promote Technological Development of Radiofrequency Phased Array Hyperthermia}, volume = {12}, journal = {Int. Journal of Hyperthermia}, pages = {477 -- 494}, year = {1996}, language = {en} } @inproceedings{DeuflhardHege1994, author = {Deuflhard, Peter and Hege, Hans-Christian}, title = {Scientific Computing in der Theoretischen Physik - Collected Abstracts}, booktitle = {Tagung organisiert von der DMV-Fachgruppe Scientific Computing in Kooperation mit dem GAMM Fachausschuss Scientific Computing}, address = {Berlin}, year = {1994}, language = {en} } @inproceedings{NadobnyWlodarczykWustetal.1998, author = {Nadobny, Jacek and Wlodarczyk, Waldemar and Wust, Peter and F{\"a}hling, Horst and M{\"o}nich, Gerhard and Deuflhard, Peter and Felix, Roland}, title = {Design and Optimization of Short Antennas for Phased-Array Hyperthermia Applicator}, booktitle = {Proc. PIERS Progress in Electromagnetic Research Symposium}, address = {Nantes}, pages = {839}, year = {1998}, language = {en} } @article{NadobnySullivanWustetal.1998, author = {Nadobny, Jacek and Sullivan, Dennis and Wust, Peter and Seebaß, Martin and Deuflhard, Peter and Felix, Roland}, title = {A High-Resolution Interpolation at Arbitary Interfaces for the FDTD Method}, volume = {46}, journal = {IEEE Trans. Microwave Theory Tech.}, number = {11}, doi = {10.1109/22.734576}, pages = {1759 -- 1766}, year = {1998}, language = {en} } @inproceedings{NadobnyWustFaehlingetal.1998, author = {Nadobny, Jacek and Wust, Peter and F{\"a}hling, Horst and Stalling, Detlev and Seebaß, Martin and Deuflhard, Peter and Felix, Roland}, title = {Numerical and Experimental Evaluation of E-Field and Absorbed Power in the Pelvic Region Using a Bone-Equivalent Phantom}, booktitle = {Proc. PIERS Progress in Electromagnetic Research Symposium}, address = {Nantes}, pages = {264}, year = {1998}, language = {en} } @article{WustGellermannBeieretal.1998, author = {Wust, Peter and Gellermann, Johanna and Beier, J{\"u}rgen and Wegner, Susan and Tilly, Wolfgang and Tr{\"o}ger, Jens and Stalling, Detlev and Hege, Hans-Christian and Deuflhard, Peter and Felix, Roland}, title = {Evaluation of Segmentation Algorithms for Generation of Patient Models in Radiofrequency Hyperthermia}, volume = {43 (11)}, journal = {Phys. Med. Biol.}, doi = {10.1088/0031-9155/43/11/009}, pages = {3295 -- 3307}, year = {1998}, language = {en} } @inproceedings{NadobnyWlodarczykWustetal.1999, author = {Nadobny, Jacek and Wlodarczyk, Waldemar and Wust, Peter and M{\"o}nich, Gerhard and Deuflhard, Peter and Felix, Roland}, title = {3D Phased Array Applicator for Hyperthermia Treatment in Pelvis}, booktitle = {Proc. XXVIth General Assembly of International Union of Radio Science (URSI)}, address = {Toronto Ontario Canada}, pages = {648}, year = {1999}, language = {en} } @inproceedings{WlodarczykNadobnyWustetal.1999, author = {Wlodarczyk, Waldemar and Nadobny, Jacek and Wust, Peter and M{\"o}nich, Gerhard and Deuflhard, Peter and Felix, Roland}, title = {Systematic Design of Antennas for a Cylindrical 3D Phased Array Hyperthermia Applicator}, booktitle = {Proc. 1999 IEEE Antennas and Propagation Society International Symposium}, address = {Orlando, FL}, doi = {10.1109/APS.1999.789482}, pages = {1004 -- 1007}, year = {1999}, language = {en} } @article{WustNadobnySeebassetal.1999, author = {Wust, Peter and Nadobny, Jacek and Seebaß, Martin and Stalling, Detlev and Gellermann, Johanna and Hege, Hans-Christian and Deuflhard, Peter}, title = {Influence of Patient Models and Numerical Methods on Predicted Power Deposition Patterns}, volume = {15}, journal = {Int. Journal Hyperthermia}, number = {6}, pages = {519 -- 540}, year = {1999}, language = {en} } @inproceedings{DeuflhardSeebass1998, author = {Deuflhard, Peter and Seebaß, Martin}, title = {Adaptive Multilevel FEM as Decisive Tools in the Clinical Cancer Therapy Hyerthermia}, booktitle = {Proc. Eleventh International Conference on Domain Decomposition Methods in Sciences and Engineering}, editor = {Lai, Choi-Hong and Bjorstad, Petter and Cross, Mark and Widlund, Olof}, address = {Greenwich, UK}, pages = {410 -- 421}, year = {1998}, language = {en} } @inproceedings{SeebassStallingHegeetal.1998, author = {Seebaß, Martin and Stalling, Detlev and Hege, Hans-Christian and Wust, Peter and Felix, Roland and Deuflhard, Peter}, title = {New Features of HyperPlan, a Hyperthermia Planning System}, booktitle = {Proc. Hyperthermia in Clincal Oncology}, address = {Venice}, pages = {16}, year = {1998}, language = {en} } @misc{MoualeuNgangueRoeblitzEhrigetal.2013, author = {Moualeu-Ngangue, Dany Pascal and R{\"o}blitz, Susanna and Ehrig, Rainald and Deuflhard, Peter}, title = {Parameter Identification for a Tuberculosis Model in Cameroon}, issn = {1438-0064}, doi = {10.1371/journal.pone.0120607}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-43087}, year = {2013}, abstract = {A deterministic model of tuberculosis in sub-Saharan Africa in general and Cameroon in particular including lack of access to the treatment and weak diagnose capacity is designed and analyzed with respect to its transmission dynamics. The model includes both frequency- and density-dependent transmissions. It is shown that the model is mathematically well-posed and epidemiologically reasonable. Solutions are non-negative and bounded whenever the initial values are non-negative. A sensitivity analysis of model parameters is performed and most sensitive parameters of the model are identified using a state-of-the-art Gauss-Newton Method. In particular, parameters representing the proportion of individuals having access to medical facilities have a large impact on the dynamics of the disease. It has been shown that an increase of these parameter values over the time can significantly reduce the disease burden in the population within the next 15 years.}, language = {en} } @misc{MoualeuNgangueWeiserEhrigetal.2013, author = {Moualeu-Ngangue, Dany Pascal and Weiser, Martin and Ehrig, Rainald and Deuflhard, Peter}, title = {Optimal control for a tuberculosis model with undetected cases in Cameroon}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-43142}, year = {2013}, abstract = {This paper considers the optimal control of tuberculosis through education, diagnosis campaign and chemoprophylaxis of latently infected. A mathematical model which includes important components such as undiagnosed infectious, diagnosed infectious, latently infected and lost-sight infectious is formulated. The model combines a frequency dependent and a density dependent force of infection for TB transmission. Through optimal control theory and numerical simulations, a cost-effective balance of two different intervention methods is obtained. Seeking to minimize the amount of money the government spends when tuberculosis remain endemic in the Cameroonian population, Pontryagin's maximum principle is used to characterize the optimal control. The optimality system is derived and solved numerically using the forward-backward sweep method (FBSM). Results provide a framework for designing cost-effective strategies for diseases with multiple intervention methods. It comes out that combining chemoprophylaxis and education, the burden of TB can be reduced by 80 \% in 10 years}, language = {en} } @article{Deuflhard2018, author = {Deuflhard, Peter}, title = {The Grand Four. Affine Invariant Globalizations of Newton's Method}, volume = {46}, journal = {Vietnam Journal of Mathematics}, number = {4}, doi = {10.1007/s10013-018-0301-3}, pages = {761 -- 777}, year = {2018}, language = {en} } @misc{NaegelDeuflhardWittum2018, author = {N{\"a}gel, Arne and Deuflhard, Peter and Wittum, Gabriel}, title = {Efficient Stiff Integration of Density Driven Flow Problems}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-70891}, year = {2018}, abstract = {The paper investigates the efficient use of a linearly implicit stiff integrator for the numerical solution of density driven flow problems. Upon choosing a one-step method of extrapolation type (code LIMEX), the use of full Jacobians and reduced approximations are discussed. Numerical experiments include nonlinear density flow problems such as diffusion from a salt dome (2D), a (modified) Elder problem (3D), the saltpool benchmark (3D) and a real life salt dome problem (2D). The arising linear equations are solved using either a multigrid preconditioner from the software package UG4 or the sparse matrix solver SuperLU.}, language = {en} } @article{HochmuthDeuflhard2004, author = {Hochmuth, Reinhard and Deuflhard, Peter}, title = {Multiscale Analysis for the Bio-Heat-Transfer Equation - The Nonisolated Case}, volume = {14}, journal = {Mathematical Models and Methods in Applied Sciences (M\$^3\$AS)}, number = {11}, pages = {1621 -- 1634}, year = {2004}, language = {en} } @inproceedings{GalliatDeuflhardRoitzschetal.2002, author = {Galliat, Tobias and Deuflhard, Peter and Roitzsch, Rainer and Cordes, Frank}, title = {Automatic Identification of Metastable Conformations via Self-Organized Neural Networks}, booktitle = {Computational Methods for Macromolecules}, number = {24}, editor = {Schlick, T. and Gan, H.}, publisher = {Springer}, year = {2002}, language = {en} } @inproceedings{GalliatHuisingaDeuflhard2000, author = {Galliat, Tobias and Huisinga, Wilhelm and Deuflhard, Peter}, title = {Self-Organizing Maps Combined with Eigenmode Analysis for Automated Cluster Identification}, booktitle = {Neural Computation, ICSC Academic Press}, editor = {H. Bothe, R.}, pages = {227 -- 232}, year = {2000}, language = {en} } @article{GellermannWustStallingetal.2000, author = {Gellermann, Johanna and Wust, Peter and Stalling, Detlev and Seebass, Martin and Nadobny, Johanna and Beck, Rudolf and Hege, Hans-Christian and Deuflhard, Peter and Felix, Roland}, title = {Clinical evaluation and verification of the hyperthermia treatment planning system hyperplan}, volume = {47}, journal = {Int J Radiat Oncol Biol Phys}, number = {4}, pages = {1145 -- 1156}, year = {2000}, language = {en} } @inproceedings{GellermannWustStallingetal.1997, author = {Gellermann, Johanna and Wust, Peter and Stalling, Detlev and Tilly, Wolfgang and Nadobny, Johanna and Seebass, Martin and Deuflhard, Peter and Felix, Roland and Budach, Volker}, title = {First Clinical Experiences with the Hyperthermia Planning System HyperPlan}, booktitle = {Proc. 16th Ann. Meeting Europ. Soc. Hyperthermic Oncology (ESHO-97), Berlin, Germany, April 1997}, pages = {79}, year = {1997}, language = {en} } @article{HochmuthDeuflhard2003, author = {Hochmuth, Reinhard and Deuflhard, Peter}, title = {On the thermoregulation in the human microvascular system}, volume = {3}, journal = {PAMM}, pages = {378 -- 379}, year = {2003}, language = {en} } @inproceedings{FrieseDeuflhardSchmidt1999, author = {Friese, T. and Deuflhard, Peter and Schmidt, Frank}, title = {A Multigrid Method for the Complex Helmholtz Eigenvalue Problem}, booktitle = {Procs. Eleventh International Conference on Domain Decomposition Methods in Sciences and Engineering (DD11), UK}, editor = {Lai, Choi-Hong and Bj{\o}rstad, Petter E. and Cross, Mark and Widlund, Olof}, publisher = {DDM.org}, pages = {19 -- 26}, year = {1999}, language = {en} } @inproceedings{GalliatDeuflhardRoitzschetal.2002, author = {Galliat, Tobias and Deuflhard, Peter and Roitzsch, Rainer and Cordes, Frank}, title = {Automatic identification of metastable conformations via self-organized neural networks}, booktitle = {Proceedings of the 3rd International Workshop on Algorithms for Macromolecular Modelling}, year = {2002}, language = {en} } @article{DeuflhardWulkow1989, author = {Deuflhard, Peter and Wulkow, Michael}, title = {Computational treatment of polyreaction kinetics by orthogonal polynomials of a discrete variable}, volume = {1}, journal = {IMPACT Comput. Sci. Eng.}, number = {3}, pages = {269 -- 301}, year = {1989}, language = {en} } @incollection{DeuflhardWulkow1995, author = {Deuflhard, Peter and Wulkow, Michael}, title = {Simulationsverfahren f{\"u}r die Polymerchemie}, booktitle = {Mathematik in der Praxis. Fallstudien aus Industrie, Wirtschaft, Naturwissenschaften und Medizin}, editor = {et al. Bachem, Achim}, publisher = {Berlin: Springer-Verlag}, pages = {117 -- 136}, year = {1995}, language = {en} } @incollection{Deuflhard2007, author = {Deuflhard, Peter}, title = {Painters, Murderers, Mathematicians}, booktitle = {Mathematics and Culture in Europe. Mathematics in Art, Technology, Cinema, and Theatre}, publisher = {Springer-Verlag}, pages = {141 -- 152}, year = {2007}, language = {en} } @misc{OPUS4-2112, title = {Computational Molecular Dynamics: Challenges, Methods, Ideas}, volume = {4}, journal = {Lecture Notes in Computational Science and Engineering}, editor = {Deuflhard, Peter and Hermans, J. and Leimkuhler, Benedict and Mark, A. and Reich, Sebastian and Skeel, B.}, publisher = {Springer}, doi = {10.1007/978-3-642-58360-5}, year = {1999}, language = {en} } @inproceedings{FischerSchuetteDeuflhardetal.2002, author = {Fischer, Alexander and Sch{\"u}tte, Christof and Deuflhard, Peter and Cordes, Frank}, title = {Hierarchical Uncoupling-Coupling of Metastable Conformations}, booktitle = {Computational Methods for Macromolecules}, number = {24}, editor = {Schlick, T. and Gan, H.}, publisher = {Springer}, pages = {235 -- 259}, year = {2002}, language = {en} } @inproceedings{FroehlichDeuflhard1996, author = {Fr{\"o}hlich, Jochen and Deuflhard, Peter}, title = {An adaptive Galerkin method for the PDF transport equation of turbulent reactive flows}, booktitle = {Progress in Industrial Mathematics, Proc. 8th Conference of the European Consortium for Mathematics in Industry (ECMI 94)}, editor = {Neunzert, H.}, publisher = {Wiley \& Teubner}, pages = {176 -- 184}, year = {1996}, language = {en} } @incollection{EhrigNowakOeverdiecketal.1999, author = {Ehrig, Rainald and Nowak, Ulrich and Oeverdieck, Lars and Deuflhard, Peter}, title = {Advanced Extrapolation Methods for Large Scale Differential Algebraic Problems}, volume = {8}, booktitle = {High Performance Scientific and Engineering Computing}, editor = {H.-J. Bungartz, F.}, publisher = {Springer Verlag}, pages = {233 -- 244}, year = {1999}, language = {en} } @article{EhrigOfenlochSchaberetal.2002, author = {Ehrig, Rainald and Ofenloch, O. and Schaber, Karlheinz and Deuflhard, Peter}, title = {Modelling and Simulation of Aerosol Formation by Heterogeneous Nucleation in Gas-Liquid Contact Devices}, volume = {57}, journal = {Chem.Eng.Sci.}, number = {7}, pages = {1151 -- 1163}, year = {2002}, language = {en} } @inproceedings{ErdmannKoberLangetal.2002, author = {Erdmann, Bodo and Kober, C. and Lang, Jens and Deuflhard, Peter and Zeilhofer, J. and Sader, Robert}, title = {Efficient and Reliable Finite Element Methods for Simulation of the Human Mandible}, booktitle = {proceedings of 9th Workshop on The Finite Element Method in Biomedical Engineering, Biomechanics and Related Fields}, address = {Ulm, Germany}, year = {2002}, language = {en} } @book{OPUS4-2126, title = {Modelling of Chemical Reaction Systems}, journal = {Series in Chemical Physics}, number = {18}, editor = {Ebert, K. and Deuflhard, Peter and J{\"a}ger, Willi}, publisher = {Springer Verlag}, year = {1981}, language = {en} } @inproceedings{EhrigNowakDeuflhard1998, author = {Ehrig, Rainald and Nowak, Ulrich and Deuflhard, Peter}, title = {Massively Parallel Simulation in Chemical Engineering by Extrapolation Algorithms}, booktitle = {Procs. 16th International Workshop on Distributed Data Processing, Novosibirsk, Russia}, editor = {Khoroshevsky, V.}, pages = {1 -- 6}, year = {1998}, language = {en} } @article{GladilinZachowDeuflhardetal.2002, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {A nonlinear elastic soft tissue model for craniofacial surgery simulations}, volume = {12}, journal = {ESAIM, Proc.}, doi = {10.1051/proc:2002011}, pages = {61 -- 66}, year = {2002}, language = {en} } @inproceedings{GladilinZachowDeuflhardetal.2002, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {A nonlinear soft tissue model for craniofacial surgery simulations}, booktitle = {Proc. of Modeling and Simulation for Computer-aided Medicine and Surgery (MS4CMS}, publisher = {INRIA}, address = {Paris, France}, year = {2002}, language = {en} } @inproceedings{GladilinZachowDeuflhardetal.2002, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {Biomechanical modeling of individual facial emotion expressions}, booktitle = {Proc. of Visualization, Imaging, and Image Processing (VIIP)}, address = {Malaga, Spain}, pages = {7 -- 11}, year = {2002}, language = {en} } @inproceedings{GladilinZachowDeuflhardetal.2002, author = {Gladilin, Evgeny and Zachow, Stefan and Deuflhard, Peter and Hege, Hans-Christian}, title = {Biomechanisches Modell zur Absch{\"a}tzung der individuellen Gesichtsmimik}, booktitle = {Proc.of Workshop Bildverarbeitung f{\"u}r die Medizin (BVM)}, editor = {Meiler, M. and Saupe, D. and Krugel, F. and Handels, H. and Lehmann, T.}, address = {Leipzig, Germany}, pages = {25 -- 28}, year = {2002}, language = {en} } @article{Deuflhard1980, author = {Deuflhard, Peter}, title = {Kepler discretization in regular celestial mechanics}, volume = {21}, journal = {Celestial Mech.}, pages = {213 -- 223}, year = {1980}, language = {en} } @article{BaderDeuflhard1983, author = {Bader, G. and Deuflhard, Peter}, title = {A semi-implicit mid-point rule for stiff systems of ordinary differential equations}, volume = {41}, journal = {Numer. Math.}, pages = {373 -- 398}, year = {1983}, language = {en} } @article{Deuflhard1983, author = {Deuflhard, Peter}, title = {Order and Stepsize Control in Extrapolation Methods}, volume = {41}, journal = {Numer. Math.}, pages = {399 -- 422}, year = {1983}, language = {en} } @article{Deuflhard1984, author = {Deuflhard, Peter}, title = {Computation of Periodic Solutions of Nonlinear ODEs}, volume = {24}, journal = {BIT}, pages = {456 -- 466}, year = {1984}, language = {en} } @article{Deuflhard1985, author = {Deuflhard, Peter}, title = {Recent Progress in Extrapolation Methods for Ordinary Differential Equations}, volume = {27}, journal = {SIAM Rev.}, pages = {505 -- 535}, year = {1985}, language = {en} } @article{Deuflhard1989, author = {Deuflhard, Peter}, title = {Numerical Treatment of Implicit Differential Equations and Differential Algebraic Systems}, volume = {69}, journal = {ZAMM}, number = {4}, pages = {T32}, year = {1989}, language = {en} } @inproceedings{Deuflhard1990, author = {Deuflhard, Peter}, title = {Uniqueness Theorems for Stiff ODE Initial Value Problems}, booktitle = {Numerical analysis 1989, proceedings 13th Biennial Conference on Numerical Analysis 1989,}, editor = {Griffiths, D. and Watson, G.}, publisher = {Dundee, Longman Scientific \& Technical, Harlow, Essex, UK,}, pages = {74 -- 205}, year = {1990}, language = {en} } @article{Deuflhard1991, author = {Deuflhard, Peter}, title = {Global inexact Newton methods for very large scale nonlinear problems}, volume = {3}, journal = {IMPACT Comput. Sci. Eng.}, pages = {366 -- 393}, year = {1991}, language = {en} } @inproceedings{Deuflhard1992, author = {Deuflhard, Peter}, title = {Stochastic Versus Deterministic Numerical ODE Integration}, booktitle = {Proc. 1st Workshop on Stochastic Numerics, Berlin}, editor = {Platen, E.}, pages = {16 -- 20}, year = {1992}, language = {en} } @inproceedings{Deuflhard1994, author = {Deuflhard, Peter}, title = {Cascadic conjugate gradient methods for elliptic partial differential equations}, volume = {180}, booktitle = {Domain decomposition methods in scientific and engineering computing}, editor = {et al. Keyes, David}, publisher = {Providence, RI: American Mathematical Society}, pages = {29 -- 42}, year = {1994}, language = {en} } @incollection{LangErdmannKoberetal.2003, author = {Lang, Jens and Erdmann, Bodo and Kober, Cornelia and Deuflhard, Peter and Sader, Robert and Zeilhofer, Hans-Florian}, title = {Effiziente und zuverl{\"a}ssige Finite-Elemente-Methoden zur Simulation des menschlichen Unterkiefers}, volume = {1}, booktitle = {Berichte des IZWR - Interdisziplin{\"a}res Zentrum f{\"u}r Wissenschaftliches Rechnen}, editor = {Alt, Walter and Hermann, Martin}, publisher = {Universit{\"a}t Jena}, address = {Germany}, pages = {49 -- 57}, year = {2003}, language = {en} } @inproceedings{LameckerSeebassHegeetal.2004, author = {Lamecker, Hans and Seebaß, Martin and Hege, Hans-Christian and Deuflhard, Peter}, title = {A 3d statistical shape model of the pelvic bone for segmentation}, volume = {5370}, booktitle = {Proc. SPIE Medical Imaging 2004}, editor = {Fitzpatrick, J. and Sonka, Milan}, pages = {1341 -- 1351}, year = {2004}, language = {en} } @inproceedings{LameckerSeebassLangeetal.2004, author = {Lamecker, Hans and Seebass, Martin and Lange, Thomas and Hege, Hans-Christian and Deuflhard, Peter}, title = {Visualization of the variability of 3D statistical shape models by animation}, volume = {98}, booktitle = {Proc. Medicine Meets Virtual Reality}, editor = {Westwood, J.}, publisher = {IOS Press}, pages = {190 -- 196}, year = {2004}, language = {en} } @article{NadobnyPontaltiSullivanetal.2003, author = {Nadobny, Johanna and Pontalti, R. and Sullivan, Dennis and Wlodarczyk, Waldemar and Vaccari, A. and Deuflhard, Peter and Wust, Peter}, title = {A Thin-Rod Approximation for the Improved Modeling of Bare and Insulated Cylindrical Antennas Using the FDTD Method}, volume = {51}, journal = {IEEE Transactions on Antennas and Propagation}, number = {8}, pages = {1780 -- 1796}, year = {2003}, language = {en} } @article{NadobnySullivanWlodarczyketal.2003, author = {Nadobny, Johanna and Sullivan, Dennis and Wlodarczyk, Waldemar and Deuflhard, Peter and Wust, Peter}, title = {A 3-D Tensor FDTD-Formulation for Treatment of Sloped Interfaces in Electrically Inhomogeneous Media}, volume = {51}, journal = {IEEE Transactions on Antennas and Propagation}, number = {8}, pages = {1760 -- 1770}, year = {2003}, language = {en} } @inproceedings{NadobnySullivanWustetal.1998, author = {Nadobny, Johanna and Sullivan, Dennis and Wust, Peter and Seebass, Martin and Deuflhard, Peter and Felix, Roland}, title = {A High Resolution Interpretation at Arbitrary Interfaces for the FDTD Method}, volume = {46}, booktitle = {IEEE Transactions on Microwave Theory and Techniques}, number = {11}, pages = {1759 -- 1766}, year = {1998}, language = {en} } @inproceedings{NadobnyWlodarczykDeuflhardetal.2001, author = {Nadobny, Johanna and Wlodarczyk, Waldemar and Deuflhard, Peter and M{\"o}nich, Gerhard and Wust, Peter}, title = {Numerical and Experimental Investigations of Different Antenna Types for Deep Body Hyperthermia}, booktitle = {Proc. 2001 URSI International Symposium on electromagnetic Theory}, editor = {Stuchly, M. and Shannon, D.}, pages = {473 -- 475}, year = {2001}, language = {en} } @inproceedings{NadobnyWustSeebassetal.1995, author = {Nadobny, Johanna and Wust, Peter and Seebass, Martin and Deuflhard, Peter and Felix, Roland}, title = {The Use of the Volume-Surface Integral Equation Method (VSIE) for Antenna Problems}, booktitle = {Proc. COST 244 meeting on Reference Models for Bioelectromagnetic Test of Mobile Communication Systems, Roma, November 1994}, editor = {Simunic, D.}, pages = {67 -- 74}, year = {1995}, language = {en} } @article{NadobnyWustSeebassetal.1996, author = {Nadobny, Johanna and Wust, Peter and Seebass, Martin and Deuflhard, Peter and Felix, Roland}, title = {A Volume-Surface Integral Method for Solving Maxwell's Equations in Electrically Inhomogeneous Media Using Tetrahedral Grids}, volume = {44}, journal = {IEEE Transactions on Microwave Theory and Techniques}, number = {4}, pages = {543 -- 554}, year = {1996}, language = {en} } @inproceedings{NadobnyWustSeebassetal.1997, author = {Nadobny, Johanna and Wust, Peter and Seebass, Martin and Stalling, Detlev and Hege, Hans-Christian and Deuflhard, Peter and Felix, Roland}, title = {A Quantitative Comparison between the VSIE and the FDTD method using Electrically Equivalent Patient and Antenna Models}, booktitle = {Proc. 16th Ann. Meeting Europ. Soc. Hyperthermic Oncology (ESHO-97), Berlin, Germany, April 1997}, pages = {145}, year = {1997}, language = {en} } @inproceedings{NadobnyWustWlodarczyketal.1996, author = {Nadobny, Johanna and Wust, Peter and Wlodarczyk, Waldemar and Seebass, Martin and Deuflhard, Peter and Felix, Roland}, title = {Simulation Studies for Combination of Hyperthermia and Magnetic Resonance Systems}, volume = {2}, booktitle = {Proc. of the 7th Int. Congress on Hyperthermic Oncology, Rome, Italy, April 1996}, editor = {Franconi, Cafiero}, pages = {549 -- 551}, year = {1996}, language = {en} } @article{NadobnyFaehlingHagmannetal.2002, author = {Nadobny, Johanna and F{\"a}hling, Horst and Hagmann, M. and Turner, P. and Wlodarczyk, Waldemar and Gellermann, Johanna and Deuflhard, Peter and Wust, Peter}, title = {Experimental and numerical investigation of feed-point parameters in a 3-D hyperthermia applicator using different FDTD models of feed networks}, volume = {49}, journal = {IEEE Trans Biomed Eng}, number = {11}, pages = {1348 -- 1359}, year = {2002}, language = {en} } @inproceedings{KoberSaderZeilhoferetal.2003, author = {Kober, C. and Sader, Robert and Zeilhofer, Hans-Florian and Deuflhard, Peter}, title = {An Individual Anisotropic and Inhomogeneous Material Description of the Human Mandible}, booktitle = {Mathematical Modelling and Computing in Biology and Medicine}, editor = {Capasso, Vincenzo}, publisher = {ESTMB}, pages = {103 -- 109}, year = {2003}, language = {en} } @article{KoerberSchaberEhrigetal.1998, author = {Koerber, Jens and Schaber, Karlheinz and Ehrig, Rainald and Deuflhard, Peter}, title = {Modelling and simulation of aerosol formation in absorption processes}, volume = {29}, journal = {J. Aerosol Sci}, pages = {579 -- 580}, year = {1998}, language = {en} } @inproceedings{NowakDeuflhard1983, author = {Nowak, Ulrich and Deuflhard, Peter}, title = {Towards Parameter Identification for Large Chemical Reaction Systems}, volume = {2}, booktitle = {Numerical Treatment of Inverse Problems in Differential and Integral Equations}, publisher = {Boston: Birkh{\"a}user}, pages = {13 -- 26}, year = {1983}, language = {en} } @article{NowakDeuflhard1985, author = {Nowak, Ulrich and Deuflhard, Peter}, title = {Numerical Identification of Selected Rate Constants in Large Chemical Reaction Systems}, volume = {1}, journal = {Appl. Numer. Math.}, pages = {59 -- 75}, year = {1985}, language = {en} } @article{DeuflhardErdmannRoitzschetal.2009, author = {Deuflhard, Peter and Erdmann, Bodo and Roitzsch, Rainer and Lines, Glenn Terje}, title = {Adaptive Finite Element Simulation of Ventricular Dynamics}, volume = {12}, journal = {J. Computing and Visualization in Science}, pages = {201 -- 205}, year = {2009}, language = {en} } @article{SchuetteFischerHuisingaetal.1999, author = {Sch{\"u}tte, Christof and Fischer, Alexander and Huisinga, Wilhelm and Deuflhard, Peter}, title = {A Direct Approach to Conformational Dynamics Based on Hybrid Monte Carlo}, volume = {151}, journal = {J. Comput. Phys.}, pages = {146 -- 168}, year = {1999}, language = {en} } @incollection{SchmidtFrieseZschiedrichetal.2003, author = {Schmidt, Frank and Friese, T. and Zschiedrich, Lin and Deuflhard, Peter}, title = {Adaptive Multigrid Methods for the Vectorial Maxwell Eigenvalue Problem for Optical Waveguide Design}, booktitle = {Mathematics - Key Technology for the Future}, publisher = {Springer}, pages = {270 -- 292}, year = {2003}, language = {en} } @inproceedings{SeebassStallingNadobnyetal.1996, author = {Seebass, Martin and Stalling, Detlev and Nadobny, Johanna and Wust, Peter and Felix, Roland and Deuflhard, Peter}, title = {Three-Dimensional Finite Element Mesh Generation for Numerical Simulations of Hyperthermia Treatments}, volume = {2}, booktitle = {Proc. of the 7th Int. Congress on Hyperthermic Oncology, Rome, Italy, April 1996}, editor = {Franconi, Cafiero}, pages = {547 -- 548}, year = {1996}, language = {en} } @inproceedings{SeebassStallingZoeckleretal.1997, author = {Seebass, Martin and Stalling, Detlev and Z{\"o}ckler, M. and Hege, Hans-Christian and Wust, Peter and Felix, Roland and Deuflhard, Peter}, title = {Surface Mesh Generation for Numerical Simulations of Hyperthermia Treatments}, booktitle = {Proc. 16th Ann. Meeting Europ. Soc. Hyperthermic Oncology (ESHO-97), Berlin, Germany, April 1997}, pages = {146}, year = {1997}, language = {en} } @article{SreenivasaGellermannNadobnyetal.2003, author = {Sreenivasa, G. and Gellermann, Johanna and Nadobny, Johanna and Schlag, P. and Deuflhard, Peter and Felix, Roland and Wust, Peter}, title = {Clinical Use of the Hyperthermia Treatment Planning System Hyperplan to Predict Effectiveness and Toxicity}, volume = {55}, journal = {Int. J. Oncology Biol. Phys.}, number = {2}, pages = {407 -- 419}, year = {2003}, language = {en} } @inproceedings{StallingSeebassHegeetal.1996, author = {Stalling, Detlev and Seebass, Martin and Hege, Hans-Christian and Wust, Peter and Deuflhard, Peter and Felix, Roland}, title = {HyperPlan - an integrated system for treatment planning in regional hyperthermia}, volume = {2}, booktitle = {Proc. of the 7th Int. Congress on Hyperthermic Oncology, Rome, Italy, April 1996}, editor = {Franconi, Cafiero}, pages = {552 -- 554}, year = {1996}, language = {en} } @incollection{SchuetteHuisingaDeuflhard2001, author = {Sch{\"u}tte, Christof and Huisinga, Wilhelm and Deuflhard, Peter}, title = {Transfer operator approach to conformational dynamics in biomolecular systems}, booktitle = {Ergodic theory, analysis, and efficient simulation of dynamical systems}, editor = {Fiedler, Bernold}, publisher = {Berlin: Springer}, pages = {191 -- 223}, year = {2001}, language = {en} } @article{SchaberKoerberOfenlochetal.2002, author = {Schaber, Karlheinz and Koerber, Jens and Ofenloch, O. and Ehrig, Rainald and Deuflhard, Peter}, title = {Aerosol Formation in Gas-Liquid Contact Devices- Nucleation, Growth and Particle Dynamics}, volume = {57}, journal = {Chem.Eng.Sci.}, pages = {4345 -- 4356}, year = {2002}, language = {en} } @article{SchaberOfenlochEhrigetal.2004, author = {Schaber, Karlheinz and Ofenloch, Oliver and Ehrig, Rainald and Deuflhard, Peter}, title = {Aerosolbildung in Gas/Fl{\"u}ssigkeits-Kontaktapparaten - Modellierungsstrategien und Simulation}, volume = {76}, journal = {Chemie Ingenieur Technik}, number = {9}, pages = {1358 -- 1359}, year = {2004}, language = {en} } @inproceedings{SchoepfDeuflhard1994, author = {Sch{\"o}pf, R. and Deuflhard, Peter}, title = {OCCAL. A mixed symbolic-numeric optimal control calculator}, volume = {115}, booktitle = {Computational optimal control}, editor = {et al. Bulirsch, R.}, publisher = {Birkh{\"a}user Verlag Basel}, pages = {269 -- 278}, year = {1994}, language = {en} } @inproceedings{SchmidtDeuflhard1994, author = {Schmidt, Frank and Deuflhard, Peter}, title = {Discrete Transparent Boundary Conditions for Fresnel's Equation}, booktitle = {Integrated Photonics Research}, address = {San Francisco, California, USA}, pages = {45 -- 47}, year = {1994}, language = {en} } @article{SchmidtDeuflhard1995, author = {Schmidt, Frank and Deuflhard, Peter}, title = {Discrete Transparent Boundary Conditions for the Numerical Solution of Fresnel's Equation.}, volume = {29}, journal = {Comput. Math. Appl.}, pages = {53 -- 76}, year = {1995}, language = {en} } @inproceedings{ReineckeDeuflhard2008, author = {Reinecke, Isabel and Deuflhard, Peter}, title = {Model Development and Decomposition in Physiology}, volume = {2}, booktitle = {Handbook of Research on Systems Biology Applications in Medicine}, editor = {Daskalaki, A.}, pages = {759 -- 797}, year = {2008}, language = {en} }