@inproceedings{RoeblitzSchintkeReinefeld2003, author = {R{\"o}blitz, Thomas and Schintke, Florian and Reinefeld, Alexander}, title = {From Clusters to the Fabric: The Job Management Perspective}, series = {2003 IEEE International Conference on Cluster Computing (CLUSTER 2003), 1-4 December 2003, Kowloon, Hong Kong, China}, booktitle = {2003 IEEE International Conference on Cluster Computing (CLUSTER 2003), 1-4 December 2003, Kowloon, Hong Kong, China}, publisher = {IEEE Computer Society}, doi = {10.1109/CLUSTR.2003.1253351}, pages = {468 -- 473}, year = {2003}, language = {en} } @inproceedings{RoeblitzRzadca2006, author = {R{\"o}blitz, Thomas and Rzadca, Krzysztof}, title = {On the Placement of Reservations into Job Schedules}, series = {Euro-Par 2006 Workshops}, volume = {4375}, booktitle = {Euro-Par 2006 Workshops}, editor = {Lehner, Wolfgang and Meyer, Norbert and Streit, Achim and Stewart, Craig}, publisher = {Springer}, pages = {198 -- 210}, year = {2006}, language = {en} } @article{RoeblitzSchintkeReinefeld2006, author = {R{\"o}blitz, Thomas and Schintke, Florian and Reinefeld, Alexander}, title = {Resource reservations with fuzzy requests}, series = {Concurrency and Computation: Practice and Experience}, volume = {18}, journal = {Concurrency and Computation: Practice and Experience}, number = {13}, doi = {10.1002/cpe.1023}, pages = {1681 -- 1703}, year = {2006}, language = {en} } @inproceedings{BaerringLopezCancioetal., author = {B{\"a}rring, Olof and Lopez, Maite Barroso and Cancio, German and R{\"o}blitz, Thomas and Schintke, Florian and et al.,}, title = {Towards automation of computing fabrics using tools from the fabric management workpackage of the EU DataGrid project}, series = {Computing in High Energy and Nuclear Physics (CHEP03)}, booktitle = {Computing in High Energy and Nuclear Physics (CHEP03)}, pages = {1 -- 8}, language = {en} } @misc{EhrigDierkesSchaeferetal., author = {Ehrig, Rainald and Dierkes, Thomas and Sch{\"a}fer, Stefan and R{\"o}blitz, Susanna and Tronci, Enrico and Mancini, Toni and Salvo, Ivano and Alimguzhin, Vadim and Mari, Federico and Melatti, Igor and Massini, Annalisa and Kr{\"u}ger, Tillmann H. C. and Egli, Marcel and Ille, Fabian and Leeners, Brigitte}, title = {An Integrative Approach for Model Driven Computation of Treatments in Reproductive Medicine}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-57103}, abstract = {We present an overview of the current status of the European collaborative project PAEON. The challenge of PAEON is to provide specialists in reproduc- tive medicine with a computerised model of the menstrual cycle under normal and various pathological conditions, which will allow them to get further in- sight in fertility dynamics. This model also enables the simulation of treatment protocols, which were used within in vitro fertilization. By the definition of virtual patients through biologically admissible parametrizations our approach allows not only the evaluation of a given treatment strategy in silico, but also the design and optimization of such protocols. Once a protocol is formalized in the virtual hospital, the success can be controlled by a treatment execution monitor, which works then as a clinical decision support system. All these tools will be combined in a virtual hospital environment, enabling the access to the PAEON services through the web.}, language = {en} } @inproceedings{EhrigDierkesSchaeferetal., author = {Ehrig, Rainald and Dierkes, Thomas and Sch{\"a}fer, Stefan and R{\"o}blitz, Susanna and Tronci, Enrico and Mancini, Toni and Salvo, Ivano and Alimguzhin, Vadim and Mari, Federico and Melatti, Igor and Massini, Annalisa and Kr{\"u}ger, Tillmann H. C. and Egli, Marcel and Ille, Fabian and Leeners, Brigitte}, title = {An integrative approach for model driven computation of treatments in reproductive medicine}, series = {BIOMAT - Proceedings of the 15th International Symposium on Mathematical and Computational Biology, Rorkee, India}, booktitle = {BIOMAT - Proceedings of the 15th International Symposium on Mathematical and Computational Biology, Rorkee, India}, language = {en} } @misc{DierkesWadeNowaketal.2011, author = {Dierkes, Thomas and Wade, Moritz and Nowak, Ulrich and R{\"o}blitz, Susanna}, title = {BioPARKIN - Biology-related Parameter Identification in Large Kinetic Networks}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-12706}, number = {11-15}, year = {2011}, abstract = {Modelling, parameter identification, and simulation play an important r{\^o}le in Systems Biology. In recent years, various software packages have been established for scientific use in both licencing types, open source as well as commercial. Many of these codes are based on inefficient and mathematically outdated algorithms. By introducing the package BioPARKIN recently developed at ZIB, we want to improve this situation significantly. The development of the software BioPARKIN involves long standing mathematical ideas that, however, have not yet entered the field of Systems Biology, as well as new ideas and tools that are particularly important for the analysis of the dynamics of biological networks. BioPARKIN originates from the package PARKIN, written by P.Deuflhard and U.Nowak, that has been applied successfully for parameter identification in physical chemistry for many years.}, language = {en} } @inproceedings{ManciniSalvoMarietal., author = {Mancini, Toni and Salvo, Ivano and Mari, Federico and Melatti, Igor and Massini, Annalisa and Sinisi, Stefano and Tronci, Enrico and Davi, Francesco and Dierkes, Thomas and Ehrig, Rainald and R{\"o}blitz, Susanna and Leeners, Brigitte and Kr{\"u}ger, Tillmann H. C. and Egli, Marcel and Ille, Fabian}, title = {Patient-Specific Models from Inter-Patient Biological Models and Clinical Records}, series = {Proceedings of the 14th Conference on Formal Methods in Computer-Aided Design (FMCAD 2014)}, booktitle = {Proceedings of the 14th Conference on Formal Methods in Computer-Aided Design (FMCAD 2014)}, pages = {207 -- 214}, language = {en} } @article{DierkesRoeblitzWadeetal.2013, author = {Dierkes, Thomas and R{\"o}blitz, Susanna and Wade, Moritz and Deuflhard, Peter}, title = {Parameter identification in large kinetic networks with BioPARKIN}, series = {CoRR - Computing Research Repository - arXiv.org}, volume = {abs/1303.4928}, journal = {CoRR - Computing Research Repository - arXiv.org}, year = {2013}, language = {en} }