@misc{BaumannBuschGottschewskietal.1997, author = {Baumann, Wolfgang and Busch, Hubert and Gottschewski, J{\"u}rgen and Steinke, Thomas and St{\"u}ben, Hinnerk}, title = {Berliner Landesh{\"o}chstleistungsrechner Parallelrechner Cray T3D/T3E: Betrieb, Nutzung, Projekte, Perspektiven f{\"u}r den Ausbau}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-5504}, number = {TR-97-08}, year = {1997}, abstract = {Seit fast drei Jahren betreibt das Konrad-Zuse-Zentrum f{\"u}r Informationstechnik Berlin (ZIB) Parallelrechner der h{\"o}chsten Leistungsklasse im normalen Rechenzentrumsbetrieb. Bereits im Mai 1995 hat das ZIB {\"u}ber seine Erfahrungen mit dem damals leistungsst{\"a}rksten Parallelrechner Deutschlands berichtet. Das Gesamtkonzept des ZIB sieht weiterhin einen H{\"o}chstleistungsrechner als unabdingbaren Bestandteil des High Performance Scientific Computing (HPSC) im ZIB vor. Der vorliegende Bericht beschreibt die aktuelle Konfiguration, Betriebserfahrungen und die Rechnernutzung sowie typische Rechenleistungen, die f{\"u}r einzelne Anwendungsprogramme erzielt wurden. Beschreibungen der Forschungsgebiete mit den Forschungsgruppen, die den Rechner nutzen und die Anforderungen an den Rechnerausbau, die sich aus deren Arbeiten herleiten, beschließen den Bericht.}, language = {de} } @inproceedings{SteinkePeterBorchert2010, author = {Steinke, Thomas and Peter, Kathrin and Borchert, Sebastian}, title = {Efficiency Considerations of Cauchy Reed-Solomon Implementations on Accelerator and Multi-Core Platforms}, booktitle = {Symposium on Application Accelerators in High Performance Computing (SAAHPC)}, address = {Knoxville, USA}, year = {2010}, language = {en} } @misc{BirkenheuerBlunkBreuersetal.2010, author = {Birkenheuer, Georg and Blunk, Dirk and Breuers, Sebastian and Brinkmann, Andr{\´e} and d. Santos Vieira, I. and Fels, Gregor and Gesing, Sandra and Grunzke, Richard and Herres-Pawlis, Sonja and Kohlbacher, Oliver and Kruber, Nico and Kr{\"u}ger, Jens and Lang, U. and Packschies, Lars and M{\"u}ller-Pfefferkorn, Ralph and Sch{\"a}fer, Patrick and Schmalz, Hans-G{\"u}nther and Steinke, Thomas and Warzecha, Klaus Dieter and Wewior, Martin}, title = {MoSGrid - A Molecular Simulation Grid as a new tool in Computational Chemistry, Biology and Material Science}, journal = {6. German Conference on Chemoinformatics}, year = {2010}, language = {en} } @inproceedings{KruegerBirkenheuerBlunketal.2010, author = {Kr{\"u}ger, Jens and Birkenheuer, Georg and Blunk, Dirk and Breuers, Sebastian and Brinkmann, Andr{\´e} and Fels, Gregor and Gesing, Sandra and Grunzke, Richard and Herres-Pawlis, Sonja and Kohlbacher, Oliver and Kruber, Nico and Lang, U. and Packschies, Lars and M{\"u}ller-Pfefferkorn, Ralph and Sch{\"a}fer, Patrick and Schmalz, Hans-G{\"u}nther and Steinke, Thomas and Warzecha, Klaus Dieter and Wewior, Martin}, title = {Molecular Simulation Grid}, booktitle = {6. German Conference on Chemoinformatics}, publisher = {Gesellschaft Deutscher Chemiker (GDCh)}, year = {2010}, language = {en} } @article{MayKreuchwigSteinkeetal.2010, author = {May, Patrick and Kreuchwig, A. and Steinke, Thomas and Koch, Ina}, title = {PTGL: a database for secondary structure-based protein topologies}, volume = {38}, journal = {Nucleic Acids Res.}, pages = {D326 -- 330}, year = {2010}, language = {en} } @inproceedings{DickmannKasparLoehnhardtetal.2009, author = {Dickmann, Frank and Kaspar, Mathias and L{\"o}hnhardt, Benjamin and Kepper, Nick and Viezens, Fred and Hertel, Frank and Lesnussa, Michael and Mohammed, Yassene and Thiel, Andreas and Steinke, Thomas and Bernarding, Johannes and Krefting, Dagmar and Knoch, Tobias and Sax, Ulrich}, title = {Visualization in Health Grid Environments: A Novel Service and Business Approach}, volume = {5745}, booktitle = {GECON}, publisher = {Springer}, doi = {10.1007/978-3-642-03864-8_12}, pages = {150 -- 159}, year = {2009}, language = {en} } @article{BauerRotherMooretal.2009, author = {Bauer, Raphael and Rother, Kristian and Moor, Peter and Reinert, Knut and Steinke, Thomas and Bujnicki, Janusz and Preissner, Robert}, title = {Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors}, volume = {2}, journal = {Algorithms}, number = {2}, doi = {10.3390/a2020692}, pages = {692 -- 709}, year = {2009}, language = {en} } @inproceedings{MayKlauBaueretal.2007, author = {May, Patrick and Klau, Gunnar and Bauer, Markus and Steinke, Thomas}, title = {Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs}, volume = {4360}, booktitle = {GCCB}, editor = {Dubitzky, W.}, publisher = {Springer}, pages = {19 -- 32}, year = {2007}, language = {en} } @article{MeyerSteinkeSuehnel2007, author = {Meyer, Michael and Steinke, Thomas and S{\"u}hnel, J{\"u}rgen}, title = {Density functional study of isoguanine tetrad and pentad sandwich complexes with alkali metal ions}, volume = {13}, journal = {Journal of Molecular Modeling}, number = {2}, publisher = {Springer Berlin / Heidelberg}, pages = {335 -- 345}, year = {2007}, language = {en} } @inproceedings{KotthaPeterSteinkeetal.2007, author = {Kottha, Samatha and Peter, Kathrin and Steinke, Thomas and Bart, Julian and Falkner, J{\"u}rgen and Weisbecker, Anette and Viezens, Fred and Mohammed, Yassene and Sax, Ulrich and Hoheisel, Andreas and Ernst, Thilo and Sommerfeld, Dietmar and Krefting, Dagmar and Vossberg, Michael}, title = {Medical Image Processing in MediGRID}, booktitle = {German E-Science Conference}, publisher = {Max Planck Digital Library}, address = {Baden-Baden}, year = {2007}, language = {en} }