@article{vonLindheimHarikrishnanDoerffeletal., author = {von Lindheim, Johannes and Harikrishnan, Abhishek and D{\"o}rffel, Tom and Klein, Rupert and Koltai, Peter and Mikula, Natalia and M{\"u}ller, Annette and N{\´e}vir, Peter and Pacey, George and Polzin, Robert and Vercauteren, Nikki}, title = {Definition, detection and tracking of persistent structures in atmospheric flows}, series = {arXiv}, journal = {arXiv}, abstract = {Long-lived flow patterns in the atmosphere such as weather fronts, mid-latitude blockings or tropical cyclones often induce extreme weather conditions. As a consequence, their description, detection, and tracking has received increasing attention in recent years. Similar objectives also arise in diverse fields such as turbulence and combustion research, image analysis, and medical diagnostics under the headlines of "feature tracking", "coherent structure detection" or "image registration" - to name just a few. A host of different approaches to addressing the underlying, often very similar, tasks have been developed and successfully used. Here, several typical examples of such approaches are summarized, further developed and applied to meteorological data sets. Common abstract operational steps form the basis for a unifying framework for the specification of "persistent structures" involving the definition of the physical state of a system, the features of interest, and means of measuring their persistence.}, language = {en} } @misc{MuellerDecker, author = {M{\"u}ller, Peter and Decker, Ingmar}, title = {The Electronic Visualization Library}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-5517}, number = {TR-97-09}, abstract = {Scientific visualization is a rapidly growing research field with a need for information dissemination. This report describes the Electronic Visualization Library (EVlib), a digital library for scientific visualization. Main design goals of EVlib were an attractive user interface providing various kind of access mechanisms as well as an open interface to other already established information systems. EVlib stores fulltext versions of documents where they are available. We also provide access to BibTeX entries for every stored document. All available BibTeX entries are combined in BibTeX bibliographies which are registered with the ``Collection of Computer Science Bibliographies'' at University of Karlsruhe. Additionally, we have defined a mapping from BibTeX attributes to the Dublin Core attribute set. This mapping is used to provide a gatherer interface for the Harvest information system. This way, existing Harvest installations can immediately use EVlib as an information resource.}, language = {en} } @misc{Mueller, author = {M{\"u}ller, Peter}, title = {Handbuch der Berliner Software Distribution (BeSD)}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-5339}, number = {TR-96-04}, abstract = {Dieser Report beschreibt ein Konzept zur einheitlichen Bereitstellung von Software in heterogenen Umgebungen. Software kann so kooperativ durch mehrere Beteiligten (z. B. auch {\"u}ber Institutsgrenzen hinweg) angeboten und genutzt werden. Die Konzepte stammen urspr{\"u}nglich vom Rechenzentrum der Universit{\"a}t Stuttgart (RUS) und wurden im Rahmen eines vom Verein zur F{\"o}rderung eines Deutschen Forschungsnetzes (DFN) mit Mitteln des BMBF gef{\"o}rderten Projekts zur Berliner Software Distribution (BeSD) weiterentwickelt.}, language = {de} } @inproceedings{GesingKacsukKozlovszkyetal.2011, author = {Gesing, Sandra and Kacsuk, Peter and Kozlovszky, Miklos and Birkenheuer, Georg and Blunk, Dirk and Breuers, Sebastian and Brinkmann, Andre and Fels, Gregor and Grunzke, Richard and Herres-Pawlis, Sonja and Kr{\"u}ger, Jens and Packschies, Lars and M{\"u}ller-Pfefferkorn, Ralph and Sch{\"a}fer, Patrick and Steinke, Thomas and Szikszay Fabri, Anna and Warzecha, Klaus Dieter and Wewior, Martin and Kohlbacher, Oliver}, title = {A Science Gateway for Molecular Simulations}, series = {EGI (European Grid Infrastructure) User Forum 2011, Book of Abstracts}, booktitle = {EGI (European Grid Infrastructure) User Forum 2011, Book of Abstracts}, pages = {94 -- 95}, year = {2011}, language = {en} } @inproceedings{GesingGrunzkeBalaskoetal.2011, author = {Gesing, Sandra and Grunzke, Richard and Balasko, Akos and Birkenheuer, Georg and Blunk, Dirk and Breuers, Sebastian and Brinkmann, Andr{\´e} and Fels, Gregor and Herres-Pawlis, Sonja and Kacsuk, Peter and Kozlovszky, Miklos and Kr{\"u}ger, Jens and Packschies, Lars and Sch{\"a}fer, Patrick and Schuller, Bernd and Schuster, Johannes and Steinke, Thomas and Szikszay Fabri, Anna and Wewior, Martin and M{\"u}ller-Pfefferkorn, Ralph and Kohlbacher, Oliver}, title = {Granular Security for a Science Gateway in Structural Bioinformatics}, series = {Proc. IWSG-Life 2011}, booktitle = {Proc. IWSG-Life 2011}, year = {2011}, language = {en} } @inproceedings{GesingHerresPawlisBirkenheueretal.2012, author = {Gesing, Sandra and Herres-Pawlis, Sonja and Birkenheuer, Georg and Brinkmann, Andre and Grunzke, Richard and Kacsuk, Peter and Kohlbacher, Oliver and Kozlovszky, Miklos and Kr{\"u}ger, Jens and M{\"u}ller-Pfefferkorn, Ralph and Sch{\"a}fer, Patrick and Steinke, Thomas}, title = {The MoSGrid Community - From National to International Scale}, series = {EGI Community Forum 2012}, booktitle = {EGI Community Forum 2012}, year = {2012}, language = {en} } @misc{DeuflhardSchuetteCordesetal.1999, author = {Deuflhard, Peter and Sch{\"u}tte, Christof and Cordes, Frank and M{\"u}ller-Kurth, L.}, title = {Konformationsdynamik. Mathematischer Entwurf hochspezifischer Biomolek{\"u}le}, publisher = {In: D. H{\"o}mberg (ed.), 8. Veranstaltungsreihe Forschungspolitische Dialoge in Berlin: Angewandte Mathematik - die verborgene Schl{\"u}sseltechnologie, 30. April 1999, Konrad-Zuse-Zentrum Berlin, pp. 30-34}, year = {1999}, language = {en} } @article{GesingHerresPawlisBirkenheueretal.2012, author = {Gesing, Sandra and Herres-Pawlis, Sonja and Birkenheuer, Georg and Brinkmann, Andr{\´e} and Grunzke, Richard and Kacsuk, Peter and Kohlbacher, Oliver and Kozlovszky, Miklos and Kr{\"u}ger, Jens and M{\"u}ller-Pfefferkorn, Ralph and Sch{\"a}fer, Patrick and Steinke, Thomas}, title = {A Science Gateway Getting Ready for Serving the International Molecular Simulation Community}, series = {Proceedings of Science}, volume = {PoS(EGICF12-EMITC2)050}, journal = {Proceedings of Science}, year = {2012}, language = {en} } @article{GesingGrunzkeKruegeretal.2012, author = {Gesing, Sandra and Grunzke, Richard and Kr{\"u}ger, Jens and Birkenheuer, Georg and Wewior, Martin and Sch{\"a}fer, Patrick and Schuller, Bernd and Schuster, Johannes and Herres-Pawlis, Sonja and Breuers, Sebastian and Balasko, Akos and Kozlovszky, Miklos and Szikszay Fabri, Anna and Packschies, Lars and Kacsuk, Peter and Blunk, Dirk and Steinke, Thomas and Brinkmann, Andr{\´e} and Fels, Gregor and M{\"u}ller-Pfefferkorn, Ralph and J{\"a}kel, Ren{\´e} and Kohlbacher, Oliver}, title = {A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics}, series = {Journal of Grid Computing}, journal = {Journal of Grid Computing}, year = {2012}, language = {en} } @article{DeckerMuellerLimbach1998, author = {Decker, Ingmar and M{\"u}ller, Peter and Limbach, Daniel}, title = {VisInfo-Fachinformationsdienst Visualisierung}, series = {DFN-Mitteilungen}, volume = {Heft 46}, journal = {DFN-Mitteilungen}, pages = {6 -- 7}, year = {1998}, language = {en} } @article{SchradeTroegerEldashanetal., author = {Schrade, Katharina and Tr{\"o}ger, Jessica and Eldashan, Adeep and Z{\"u}hlke, Kerstin and Abdul Azees, Kamal R. and Elkins, Jonathan M. and Neuenschwander, Martin and Oder, Andreas and Elkewedi, Mohamed and Jaksch, Sarah and Andrae, Karsten and Li, Jinliang and Fernandes, Jaoa and M{\"u}ller, Paul Markus and Grunwald, Stephan and Marino, Stephen F. and Vukicevic, Tanja and Eichhorst, Jenny and Wiesner, Burkhard and Weber, Marcus and Kapiloff, Michael and Rocks, Oliver and Daumke, Oliver and Wieland, Thomas and Knapp, Stefan and von Kries, Jens Peter and Klussmann, Enno}, title = {An AKAP-Lbc-RhoA interaction inhibitor promotes the translocation of aquaporin-2 to the plasma membrane of renal collecting duct principal cells}, series = {PLOS ONE}, volume = {13}, journal = {PLOS ONE}, number = {1}, doi = {10.1371/journal.pone.0191423}, pages = {e0191423 -- e0191423}, abstract = {Stimulation of renal collecting duct principal cells with antidiuretic hormone (arginine-vasopressin, AVP) results in inhibition of the small GTPase RhoA and the enrichment of the water channel aquaporin-2 (AQP2) in the plasma membrane. The membrane insertion facilitates water reabsorption from primary urine and fine-tuning of body water homeostasis. Rho guanine nucleotide exchange factors (GEFs) interact with RhoA, catalyze the exchange of GDP for GTP and thereby activate the GTPase. However, GEFs involved in the control of AQP2 in renal principal cells are unknown. The A-kinase anchoring protein, AKAP-Lbc, possesses GEF activity, specifically activates RhoA, and is expressed in primary renal inner medullary collecting duct principal (IMCD) cells. Through screening of 18,431 small molecules and synthesis of a focused library around one of the hits, we identified an inhibitor of the interaction of AKAP-Lbc and RhoA. This molecule, Scaff10-8, bound to RhoA, inhibited the AKAP-Lbc-mediated RhoA activation but did not interfere with RhoA activation through other GEFs or activities of other members of the Rho family of small GTPases, Rac1 and Cdc42. Scaff10-8 promoted the redistribution of AQP2 from intracellular vesicles to the periphery of IMCD cells. Thus, our data demonstrate an involvement of AKAP-Lbc-mediated RhoA activation in the control of AQP2 trafficking.}, language = {en} } @article{MartinMuellerPapeetal., author = {Martin, Alex and M{\"u}ller, J. and Pape, S. and Peter, A. and Pokutta, Sebastian and Winter, T.}, title = {Pricing and clearing combinatorial markets with singleton and swap orders}, series = {Mathematical Methods of Operations Research}, volume = {85}, journal = {Mathematical Methods of Operations Research}, number = {2}, pages = {155 -- 177}, language = {en} } @article{PichtLeCalveTomaselloetal., author = {Picht, Thomas and Le Calve, Maxime and Tomasello, Rosario and Fekonja, Lucius and Gholami, Mohammad Fardin and Bruhn, Matthias and Zwick, Carola and Rabe, J{\"u}rgen P. and M{\"u}ller-Birn, Claudia and Vajkoczy, Peter and Sauer, Igor M. and Zachow, Stefan and Nyakatura, John A. and Ribault, Patricia and Pulverm{\"u}ller, Friedemann}, title = {A note on neurosurgical resection and why we need to rethink cutting}, series = {Neurosurgery}, volume = {89}, journal = {Neurosurgery}, number = {5}, doi = {10.1093/neuros/nyab326}, pages = {289 -- 291}, language = {en} }