@inproceedings{SeimKainmuellerHelleretal.2008, author = {Seim, Heiko and Kainm{\"u}ller, Dagmar and Heller, Markus O. and Lamecker, Hans and Zachow, Stefan and Hege, Hans-Christian}, title = {Automatic Segmentation of the Pelvic Bones from CT Data Based on a Statistical Shape Model}, series = {Eurographics Workshop on Visual Computing for Biomedicine (VCBM)}, booktitle = {Eurographics Workshop on Visual Computing for Biomedicine (VCBM)}, address = {Delft, Netherlands}, pages = {93 -- 100}, year = {2008}, language = {en} } @inproceedings{LameckerLangeSeebassetal.2003, author = {Lamecker, Hans and Lange, Thomas and Seebaß, Martin and Eulenstein, Sebastian and Westerhoff, Malte and Hege, Hans-Christian}, title = {Automatic Segmentation of the Liver for Preoperative Planning of Resections}, series = {Proc. MMVR 2003}, booktitle = {Proc. MMVR 2003}, publisher = {IOS press}, address = {Newport Beach, CA}, pages = {171 -- 173}, year = {2003}, language = {en} } @article{LameckerZachowWittmersetal.2006, author = {Lamecker, Hans and Zachow, Stefan and Wittmers, Antonia and Weber, Britta and Hege, Hans-Christian and Elsholtz, Barbara and Stiller, Michael}, title = {Automatic segmentation of mandibles in low-dose CT-data}, series = {Int. J. Computer Assisted Radiology and Surgery}, volume = {1(1)}, journal = {Int. J. Computer Assisted Radiology and Surgery}, pages = {393 -- 395}, year = {2006}, language = {en} } @inproceedings{SeimKainmuellerHelleretal.2009, author = {Seim, Heiko and Kainm{\"u}ller, Dagmar and Heller, Markus O. and Zachow, Stefan and Hege, Hans-Christian}, title = {Automatic Extraction of Anatomical Landmarks from Medical Image Data: An Evaluation of Different Methods}, series = {Proc. of IEEE Int. Symposium on Biomedical Imaging (ISBI)}, booktitle = {Proc. of IEEE Int. Symposium on Biomedical Imaging (ISBI)}, address = {Boston, MA, USA}, pages = {538 -- 541}, year = {2009}, language = {en} } @inproceedings{DercksenWeberGuentheretal.2009, author = {Dercksen, Vincent J. and Weber, Britta and G{\"u}nther, David and Oberlaender, Marcel and Prohaska, Steffen and Hege, Hans-Christian}, title = {Automatic alignment of stacks of filament data}, series = {Proc. IEEE International Symposium on Biomedical Imaging}, booktitle = {Proc. IEEE International Symposium on Biomedical Imaging}, publisher = {IEEE press}, address = {Boston, USA}, pages = {971 -- 974}, year = {2009}, language = {en} } @article{WeberGreenanProhaskaetal.2012, author = {Weber, Britta and Greenan, Garrett and Prohaska, Steffen and Baum, Daniel and Hege, Hans-Christian and M{\"u}ller-Reichert, Thomas and Hyman, Anthony and Verbavatz, Jean-Marc}, title = {Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryos}, series = {Journal of Structural Biology}, volume = {178}, journal = {Journal of Structural Biology}, number = {2}, doi = {10.1016/j.jsb.2011.12.004}, pages = {129 -- 138}, year = {2012}, language = {en} } @article{OberlaenderDercksenEggeretal.2009, author = {Oberlaender, Marcel and Dercksen, Vincent J. and Egger, Robert and Gensel, Maria and Sakmann, Bert and Hege, Hans-Christian}, title = {Automated three-dimensional detection and counting of neuron somata}, series = {Journal of Neuroscience Methods}, volume = {180}, journal = {Journal of Neuroscience Methods}, number = {1}, doi = {10.1016/j.jneumeth.2009.03.008}, pages = {147 -- 160}, year = {2009}, language = {en} } @article{RigortGuentherHegerletal.2012, author = {Rigort, Alexander and G{\"u}nther, David and Hegerl, Reiner and Baum, Daniel and Weber, Britta and Prohaska, Steffen and Medalia, Ohad and Baumeister, Wolfgang and Hege, Hans-Christian}, title = {Automated segmentation of electron tomograms for a quantitative description of actin filament networks}, series = {Journal of Structural Biology}, volume = {177}, journal = {Journal of Structural Biology}, doi = {10.1016/j.jsb.2011.08.012}, pages = {135 -- 144}, year = {2012}, language = {en} } @article{HashimotoHege1993, author = {Hashimoto, T. and Hege, Hans-Christian}, title = {Autocorrelation in Updating Pure SU(3) Lattice Gauge Theory by the Use of Overrelaxed Algorithms}, series = {Nucl. Phys. B Proc. Suppl.}, volume = {30}, journal = {Nucl. Phys. B Proc. Suppl.}, doi = {10.1016/0920-5632(93)90202-H}, pages = {253 -- 256}, year = {1993}, language = {en} } @inproceedings{LindowBaumHege, author = {Lindow, Norbert and Baum, Daniel and Hege, Hans-Christian}, title = {Atomic Accessibility Radii for Molecular Dynamics Analysis}, series = {Workshop on Molecular Graphics and Visual Analysis of Molecular Data}, booktitle = {Workshop on Molecular Graphics and Visual Analysis of Molecular Data}, publisher = {The Eurographics Association}, isbn = {978-3-03868-061-1}, doi = {10.2312/molva.20181101}, abstract = {In molecular structure analysis and visualization, the molecule's atoms are often modeled as hard spheres parametrized by their positions and radii. While the atom positions result from experiments or molecular simulations, for the radii typically values are taken from literature. Most often, van der Waals (vdW) radii are used, for which diverse values exist. As a consequence, different visualization and analysis tools use different atomic radii, and the analyses are less objective than often believed. Furthermore, for the geometric accessibility analysis of molecular structures, vdW radii are not well suited. The reason is that during the molecular dynamics simulation, depending on the force field and the kinetic energy in the system, non-bonded atoms can come so close to each other that their vdW spheres intersect. In this paper, we introduce a new kind of atomic radius, called atomic accessibility radius', that better characterizes the accessibility of an atom in a given molecular trajectory. The new radii reflect the movement possibilities of atoms in the simulated physical system. They are computed by solving a linear program that maximizes the radii of the atoms under the constraint that non-bonded spheres do not intersect in the considered molecular trajectory. Using this data-driven approach, the actual accessibility of atoms can be visualized more precisely.}, language = {en} }