@article{ZoecklerStalling2002, author = {Z{\"o}ckler, Malte and Stalling, Detlev}, title = {Using confocal microscopy and advanced 3-d visualization to investigate the Drosophila brain}, series = {Scientific Computing \& Instrumentation}, journal = {Scientific Computing \& Instrumentation}, year = {2002}, language = {en} } @inproceedings{ZoecklerStallingHege1996, author = {Z{\"o}ckler, Malte and Stalling, Detlev and Hege, Hans-Christian}, title = {Parallel Line Integral Convolution}, series = {Proc. First Eurographics Workshop on Parallel Graphics and Visualization}, booktitle = {Proc. First Eurographics Workshop on Parallel Graphics and Visualization}, address = {Bristol, U.K.}, doi = {10.1016/S0167-8191(97)00039-2}, pages = {111 -- 128}, year = {1996}, language = {en} } @inproceedings{ZoecklerStallingHege1996, author = {Z{\"o}ckler, Malte and Stalling, Detlev and Hege, Hans-Christian}, title = {Interactive Visualization of 3D-Vector Fields Using Illuminated Streamlines}, series = {Proc. IEEE Visualization 1996}, booktitle = {Proc. IEEE Visualization 1996}, address = {San Fransisco}, doi = {10.1109/VISUAL.1996.567777}, pages = {107 -- 113}, year = {1996}, language = {en} } @article{ZoecklerStallingHege2000, author = {Z{\"o}ckler, Malte and Stalling, Detlev and Hege, Hans-Christian}, title = {Fast and Intuitive Generation of Geometric Shape Transitions}, series = {The Visual Computer}, volume = {16(5)}, journal = {The Visual Computer}, doi = {10.1007/PL00013396}, pages = {241 -- 253}, year = {2000}, language = {en} } @misc{ZoecklerStallingHege, author = {Z{\"o}ckler, Malte and Stalling, Detlev and Hege, Hans-Christian}, title = {Fast and Intuitive Generation of Geometric Shape Transitions}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-4219}, number = {SC-99-33}, abstract = {We describe a novel method for continuously transforming two triangulated models of arbitrary topology into each other. Equal global topology for both objects is assumed, extensions for genus changes during metamorphosis are provided. The proposed method addresses the major challenge in 3D metamorphosis, namely specifying the morphing process intuitively, with minimal user interaction and sufficient detail. Corresponding regions and point features are interactively identified. These regions are parametrized automatically and consistently, providing a basis for smooth interpolation. Utilizing suitable 3D interaction techniques a simple and intuitive control over the whole morphing process is offered.}, language = {en} } @article{OettingerMontefuscoPeletier, author = {{\"O}ttinger, Hans Christian and Montefusco, Alberto and Peletier, Mark A.}, title = {A Framework of Nonequilibrium Statistical Mechanics. I. Role and Types of Fluctuations}, series = {Journal of Non-Equilibrium Thermodynamics}, volume = {46}, journal = {Journal of Non-Equilibrium Thermodynamics}, number = {1}, publisher = {De Gruyter}, doi = {10.1515/jnet-2020-0068}, pages = {1 -- 13}, abstract = {Understanding the fluctuations by which phenomenological evolution equations with thermodynamic structure can be enhanced is the key to a general framework of nonequilibrium statistical mechanics. These fluctuations provide an idealized representation of microscopic details. We consider fluctuation-enhanced equations associated with Markov processes and elaborate the general recipes for evaluating dynamic material properties, which characterize force-flux constitutive laws, by statistical mechanics. Markov processes with continuous trajectories are conveniently characterized by stochastic differential equations and lead to Green-Kubo-type formulas for dynamic material properties. Markov processes with discontinuous jumps include transitions over energy barriers with the rates calculated by Kramers. We describe a unified approach to Markovian fluctuations and demonstrate how the appropriate type of fluctuations (continuous versus discontinuous) is reflected in the mathematical structure of the phenomenological equations.}, language = {en} } @misc{OezelKulkarniHasanetal., author = {{\"O}zel, M. Neset and Kulkarni, Abhishek and Hasan, Amr and Brummer, Josephine and Moldenhauer, Marian and Daumann, Ilsa-Maria and Wolfenberg, Heike and Dercksen, Vincent J. and Kiral, F. Ridvan and Weiser, Martin and Prohaska, Steffen and von Kleist, Max and Hiesinger, Peter Robin}, title = {Serial synapse formation through filopodial competition for synaptic seeding factors}, issn = {1438-0064}, doi = {10.1016/j.devcel.2019.06.014}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-74397}, abstract = {Following axon pathfinding, growth cones transition from stochastic filopodial exploration to the formation of a limited number of synapses. How the interplay of filopodia and synapse assembly ensures robust connectivity in the brain has remained a challenging problem. Here, we developed a new 4D analysis method for filopodial dynamics and a data-driven computational model of synapse formation for R7 photoreceptor axons in developing Drosophila brains. Our live data support a 'serial synapse formation' model, where at any time point only a single 'synaptogenic' filopodium suppresses the synaptic competence of other filopodia through competition for synaptic seeding factors. Loss of the synaptic seeding factors Syd-1 and Liprin-α leads to a loss of this suppression, filopodial destabilization and reduced synapse formation, which is sufficient to cause the destabilization of entire axon terminals. Our model provides a filopodial 'winner-takes-all' mechanism that ensures the formation of an appropriate number of synapses.}, language = {en} } @incollection{ŞahinLindnerSchlechte, author = {Şahin, G{\"u}ven{\c{c}} and Lindner, Niels and Schlechte, Thomas}, title = {Line Planning Problem}, series = {Encyclopedia of Optimization}, booktitle = {Encyclopedia of Optimization}, editor = {Pardalos, P. M. and Prokopyev, O. A.}, publisher = {Springer International Publishing}, address = {Cham}, isbn = {978-3-030-54621-2}, doi = {10.1007/978-3-030-54621-2_782-1}, pages = {1 -- 6}, language = {en} } @misc{Şirin, type = {Master Thesis}, author = {Şirin, Ege}, title = {Probabilistic Image Segmentation With Continuous Shape Representations}, language = {en} } @article{ŠofranacGleixnerPokutta, author = {Šofranac, Boro and Gleixner, Ambros and Pokutta, Sebastian}, title = {An Algorithm-independent Measure of Progress for Linear Constraint Propagation}, series = {Constraints}, volume = {27}, journal = {Constraints}, doi = {10.1007/s10601-022-09338-9}, pages = {432 -- 455}, language = {en} }