@misc{KempkeMaherRehfeldtetal.2026, author = {Kempke, Nils-Christian and Maher, Stephen John and Rehfeldt, Daniel and Gleixner, Ambros and Koch, Thorsten and Uslu, Svenja}, title = {Distributed Parallel Structure-Aware Presolving for Arrowhead Linear Programs}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-103034}, year = {2026}, abstract = {We present a structure-aware parallel presolve framework specialized to arrowhead linear programs (AHLPs) and designed for high-performance computing (HPC) environments, integrated into the parallel interior point solver PIPS-IPM++. Large-scale LPs arising from automated model generation frequently contain redundancies and numerical pathologies that necessitate effective presolve, yet existing presolve techniques are primarily serial or structure-agnostic and can become time-consuming in parallel solution workflows. Within PIPS-IPM++, AHLPs are stored in distributed memory, and our presolve builds on this to apply a highly parallel, distributed presolve across compute nodes while keeping communication overhead low and preserving the underlying arrowhead structure. We demonstrate the scalability and effectiveness of our approach on a diverse set of AHLPs and compare it against state-of-the-art presolve implementations, including PaPILO and the presolve implemented within Gurobi. Even on a single machine, our presolve significantly outperforms PaPILO by a factor of 18 and Gurobi's presolve by a factor of 6 in terms of shifted geometric mean runtime, while reducing the problems by a similar amount to PaPILO. Using a distributed compute environment, we outperform Gurobi's presolve by a factor of 13.}, language = {en} } @misc{LindnerMehlBartoszuketal.2025, author = {Lindner, Niels and Mehl, Lukas and Bartoszuk, Karolina and Berendes, Sarah and Zittel, Janina}, title = {Demand Uncertainty in Energy Systems: Scenario Catalogs vs. Integrated Robust Optimization}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-102404}, year = {2025}, abstract = {Designing efficient energy systems is indispensable for shaping a more sustainable society. This involves making infrastructure investment decisions that must be valid for a long-term time horizon. While energy system optimization models constitute a powerful technique to support planning decisions, they need to cope with inherent uncertainty. For example, predicting future demand on a scale of decades is not only an intricate challenge in itself, but small fluctuations in such a forecast might also largely impact the layout of a complex energy system. In this paper, we compare two methodologies of capturing demand uncertainty for linear-programming based energy system optimization models. On one hand, we generate and analyze catalogs of varying demand scenarios, where each individual scenario is considered independently, so that the optimization produces scenario-specific investment pathways. On the other hand, we make use of robust linear programming to meet the demand of all scenarios at once. Since including a multitude of scenarios increases the size and complexity of the optimization model, we will show how to use warm-starting approaches to accelerate the computation process, by exploiting the similar structure of the linear program across different demand inputs. This allows to integrate a meaningful number of demand scenarios with fully-fledged energy system models. We demonstrate the practical use of our methods in a case study of the Berlin-Brandenburg area in Germany, a region that contains both a metropolitan area and its rural surroundings. As a backbone, we use the open-source framework oemof to create a sector-coupled optimization model for planning an energy system with up to 100\% reduction of greenhouse gas emissions. This model features a fine-grained temporal resolution of one hour for the full year 2050. We consider uncertainty in demand for electricity, hydrogen, natural gas, central, and decentral heat. Based on our computations, we analyze the trade-offs in terms of quality and computation time for scenario catalogs and the robust optimization approach. We further demonstrate that our procedure provides a valuable strategy for decision makers to gain insight on the robustness and sensitivity of solutions regarding demand variability.}, language = {en} } @misc{EbertSchlechteSchwartz2025, author = {Ebert, Patricia and Schlechte, Thomas and Schwartz, Stephan}, title = {Scheduling for German Road Inspectors}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-101999}, year = {2025}, abstract = {For the yearly over 500,000 vehicle inspections of the German Federal Logistics and Mobility Office (BALM), crew rosters must be scheduled to efficiently achieve Germany's road inspection control targets. For that, we present a model to solve the respective duty scheduling and crew rostering problem in order to obtain duty rosters that comply with numerous legal regulations while maximizing the 'control success' to achieve the control targets. We formulate the Template Assignment Problem, which can be modelled as a large scale mixed-integer linear program. Here, feasible combinations of control topics are assigned to the duties using a hypergraph approach. The model is used in production by BALM, and we prove its effectiveness on a number of real-world instances.}, language = {en} } @misc{ZakiyevaPetkovic2025, author = {Zakiyeva, Nazgul and Petkovic, Milena}, title = {Large-scale functional network time series model solved with mathematical programming approach}, journal = {Econometrics and Statistics}, doi = {10.1016/j.ecosta.2025.10.001}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-101936}, year = {2025}, abstract = {A functional network autoregressive model is proposed for studying large-scale network time series observed at high temporal resolution. The model incorporates high-dimensional curves to capture both serial and cross-sectional dependence in large-scale network functional time series. Estimation of the model is approached using a Mixed Integer Optimization method. Simulation studies confirm the consistency of parameter and adjacency matrix estimation. The method is applied to data from a real-life natural gas supply network. Compared to alternative prediction models, the proposed model delivers more accurate day-ahead hourly out-of-sample forecasts of the gas inflows and outflows at most gas nodes.}, language = {en} } @misc{PedersenLindnerRehfeldtetal.2025, author = {Pedersen, Jaap and Lindner, Niels and Rehfeldt, Daniel and Koch, Thorsten}, title = {Comparing Branching Rules for the Quota Steiner Tree Problem with Interference}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-101250}, year = {2025}, abstract = {Branching decisions play a crucial role in branch-and-bound algorithms for solving combinatorial optimization problems. In this paper, we investigate several branching rules applied to the Quota Steiner Tree Problem with Interference (QSTPI). The Quota Steiner Tree Problem (QSTP) generalizes the classical Steiner Tree Problem (STP) in graphs by seeking a minimum-cost tree that connects a subset of profit-associated vertices to meet a given quota. The extended version, QSTPI, introduces interference among vertices: Selecting certain vertices simultaneously reduces their individual contributions to the overall profit. This problem arises, for example, in positioning and connecting wind turbines, where turbines possibly shadow other turbines, reducing their energy yield. While exact solvers for standard STP-related problems often rely heavily on reduction techniques and cutting-plane methods - rarely generating large branch-and-bound trees - experiments reveal that large instances of QSTPI require significantly more branching to compute provably optimal solutions. In contrast to branching on variables, we utilize the combinatorial structure of the QSTPI by branching on the graph's vertices. We adapt classical and problem-specific branching rules and present a comprehensive computational study comparing the effectiveness of these branching strategies.}, language = {en} } @misc{MehlLindnerBartoszuketal.2025, author = {Mehl, Lukas and Lindner, Niels and Bartoszuk, Karolina and Zittel, Janina}, title = {Prototypical warm-starts for demand-robust LP-based energy system optimization}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-101242}, year = {2025}, abstract = {The expressiveness of energy system optimization models (ESOMs) depends on a multitude of exogenous parameters. For example, sound estimates of the future energy demand are essential to enable qualified decisions on long-term investments. However, the enormous demand fluctuations even on a fine-grained scale diminish the computational performance of large-scale ESOMs. We therefore propose a clustering-and-decomposition method for linear programming based ESOMs that first identifies and solves prototypical demand scenarios with the dual simplex algorithm, and then composes dual optimal prototype bases to a warm-start basis for the full model. We evaluate the feasibility and computational efficiency our approach on a real-world case study, using a sector-coupled ESOM with hourly resolution for the Berlin-Brandenburg area in Germany, based on the oemof framework.}, language = {en} } @misc{LindnerLiebchen2025, author = {Lindner, Niels and Liebchen, Christian}, title = {A two-stage model for periodic timetabling with fixed line activities}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-101234}, year = {2025}, abstract = {The timetable is a central pillar of any public transportation system. Constructing and optimizing periodic timetables in terms of passenger comfort and operational efficiency leads to NP-hard optimization problems that are also computationally challenging in applications. The Periodic Event Scheduling Problem (PESP) as standard mathematical tool benefits from its succinct formulation and rich combinatorial structure, but suffers from poor linear programming relaxations and weak dual bounds. These difficulties persist in a reduced version, where driving and dwelling activities of the lines are assumed to be fixed. In this case, fixing the initial departure time of each line fully determines the timetable, and for each pair of lines, the resulting (weighted) transfer durations can be expressed in terms of a piecewise linear non-convex function in terms of the difference of the initial times. When the number of activities between two lines is bounded, this function can be computed in polynomial time. By inserting precomputed piecewise linear functions into a mixed-integer program with the initial departure times as variables, we introduce an equivalent formulation for reduced PESP instances. The model bears analogies with quadratic semi-assignment approaches and offers alternative ways to compute primal and dual bounds. We evaluate the computational behavior of our approach on realistic benchmarking instances.}, language = {en} } @misc{RiedmuellerZittelKoch2025, author = {Riedm{\"u}ller, Stephanie and Zittel, Janina and Koch, Thorsten}, title = {Warm-starting Strategies in Scalarization Methods for Multi-Objective Optimization}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-101073}, year = {2025}, abstract = {We explore how warm-starting strategies can be integrated into scalarization-based approaches for multi-objective optimization in (mixed) integer linear programming. Scalarization methods remain widely used classical techniques to compute Pareto-optimal solutions in applied settings. They are favored due to their algorithmic simplicity and broad applicability across continuous and integer programs with an arbitrary number of objectives. While warm-starting has been applied in this context before, a systematic methodology and analysis remain lacking. We address this gap by providing a theoretical characterization of warm-starting within scalarization methods, focusing on the sequencing of subproblems. However, optimizing the order of subproblems to maximize warm-start efficiency may conflict with alternative criteria, such as early identification of infeasible regions. We quantify these trade-offs through an extensive computational study.}, language = {en} } @inproceedings{KuntBuchholzKhebourietal.2025, author = {Kunt, Tim and Buchholz, Annika and Khebouri, Imene and Koch, Thorsten and Litzel, Ida and Vu, Thi Huong}, title = {Mapping the Web of Science, a large-scale graph and text-based dataset with LLM embeddings}, booktitle = {Operations Research Proceedings 2025. OR 2025}, issn = {1438-0064}, doi = {10.12752/10064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-100646}, year = {2025}, abstract = {Large text data sets, such as publications, websites, and other text-based media, inherit two distinct types of features: (1) the text itself, its information conveyed through semantics, and (2) its relationship to other texts through links, references, or shared attributes. While the latter can be described as a graph structure and can be handled by a range of established algorithms for classification and prediction, the former has recently gained new potential through the use of LLM embedding models. Demonstrating these possibilities and their practicability, we investigate the Web of Science dataset, containing ~56 million scientific publications through the lens of our proposed embedding method, revealing a self-structured landscape of texts.}, language = {en} } @misc{KempkeKoch2025, author = {Kempke, Nils-Christian and Koch, Thorsten}, title = {A GPU accelerated variant of Schroeppel-Shamir's algorithm for solving the market split problem}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-100554}, year = {2025}, abstract = {The market split problem (MSP), introduced by Cornu{\´e}jols and Dawande (1998), is a challenging binary optimization problem that performs poorly on state-of-the-art linear programming-based branch-and-cut solvers. We present a novel algorithm for solving the feasibility version of this problem, derived from Schroeppel-Shamir's algorithm for the one-dimensional subset sum problem. Our approach is based on exhaustively enumerating one-dimensional solutions of MSP and utilizing GPUs to evaluate candidate solutions across the entire problem. The resulting hybrid CPU-GPU implementation efficiently solves instances with up to 10 constraints and 90 variables. We demonstrate the algorithm's performance on benchmark problems, solving instances of size (9, 80) in less than fifteen minutes and (10, 90) in up to one day.}, language = {en} } @misc{VuLitzelKoch2025, author = {Vu, Thi Huong and Litzel, Ida and Koch, Thorsten}, title = {Similarity-based fuzzy clustering scientific articles: potentials and challenges from mathematical and computational perspectives}, arxiv = {http://arxiv.org/abs/2506.04045}, year = {2025}, abstract = {Fuzzy clustering, which allows an article to belong to multiple clusters with soft membership degrees, plays a vital role in analyzing publication data. This problem can be formulated as a constrained optimization model, where the goal is to minimize the discrepancy between the similarity observed from data and the similarity derived from a predicted distribution. While this approach benefits from leveraging state-of-the-art optimization algorithms, tailoring them to work with real, massive databases like OpenAlex or Web of Science -- containing about 70 million articles and a billion citations -- poses significant challenges. We analyze potentials and challenges of the approach from both mathematical and computational perspectives. Among other things, second-order optimality conditions are established, providing new theoretical insights, and practical solution methods are proposed by exploiting the problem's structure. Specifically, we accelerate the gradient projection method using GPU-based parallel computing to efficiently handle large-scale data.}, language = {en} } @misc{RuschPetersKottigCeynowaetal.2025, author = {Rusch, Beate and Peters-Kottig, Wolfgang and Ceynowa, Klaus and Dinter, Joachim and Dubberke, Ina and Happel, Hans-Gerd and Hilliger, Kirsten and Kitaeva, Xenia and Kleineberg, Michael and Koch, Thorsten and Mc Leod, Shirley and Mutter, Moritz and M{\"u}ller, Anja and Seeliger, Frank and Segger, Elisabeth and Stanek, Ursula and Wiese, Robert and Wrzesinski, Marcel}, title = {KOBV Jahresbericht 2023-2024}, volume = {2023-2024}, address = {Berlin}, organization = {Kooperativer Bibliotheksverbund Berlin-Brandenburg}, issn = {0934-5892}, doi = {10.12752/10044}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-100440}, year = {2025}, language = {de} } @misc{VuKoch2025, author = {Vu, Thi Huong and Koch, Thorsten}, title = {Clustering scientific publications: lessons learned through experiments with a real citation network}, arxiv = {http://arxiv.org/abs/2505.18180}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-100418}, year = {2025}, abstract = {Clustering scientific publications helps uncover research structures within bibliographic databases. Graph-based methods such as spectral, Louvain, and Leiden clustering are commonly used due to their ability to model citation networks. However, their effectiveness can diminish when applied to real-world data. This study evaluates these clustering algorithms on a citation graph of about 700,000 articles and 4.6 million citations from the Web of Science. The results show that while scalable methods like Louvain and Leiden perform efficiently, their default settings often yield poor partitioning. Meaningful outcomes require careful parameter tuning, especially for large networks with uneven structures, including a dense core and loosely connected papers. These findings highlight practical lessons about the challenges of large-scale data, method selection and tuning based on specific structures of bibliometric clustering tasks.}, language = {en} } @misc{RiedmuellerBuchholzZittel2025, author = {Riedm{\"u}ller, Stephanie and Buchholz, Annika and Zittel, Janina}, title = {Enhancing Multi-Energy Modeling: The Role of Mixed-Integer Optimization Decisions}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-100329}, year = {2025}, abstract = {The goal to decarbonize the energy sector has led to increased research in modeling and optimizing multi-energy systems. One of the most promising and popular techniques for modeling and solving (multi-)energy optimization problems is (multi-objective) mixed-integer programming, valued for its ability to represent the complexities of integrated energy systems. While the literature often focuses on deriving mathematical formulations and parameter settings, less attention is given to critical post-formulation decisions. Modeling multi-energy systems as mixed-integer linear optimization programs demands decisions across multiple degrees of freedom. Key steps include reducing a real-world multi energy network into an abstract topology, defining variables, formulating the relevant (in-)equalities to represent technical requirements, setting (multiple) objectives, and integrating these elements into a mixed-integer program (MIP). However, with these elements fixed, the specific transformation of the abstract topology into a graph structure and the construction of the MIP remain non-uniquely. These choices can significantly impact user-friendliness, problem size, and computational efficiency, thus affecting the feasibility and efficiency of modeling efforts. In this work, we identify and analyze the additional degrees of freedom and describe two distinct approaches to address them. The approaches are compared regarding mathematical equivalence, suitability for solution algorithms, and clarity of the underlying topology. A case study on a realistic subarea of Berlin's district heating network involving tri-objective optimization for a unit commitment problem demonstrates the practical significance of these decisions. By highlighting these critical yet often overlooked aspects, our work equips energy system modelers with insights to improve computational efficiency, scalability, and interpretability in their optimization efforts, ultimately enhancing the practicality and effectiveness of multi-energy system models.}, language = {en} } @misc{KempkeKoch2025, author = {Kempke, Nils-Christian and Koch, Thorsten}, title = {Low-precision first-order method-based fix-and-propagate heuristics for large-scale mixed-integer linear optimization}, issn = {1438-0064}, arxiv = {http://arxiv.org/abs/2503.10344}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-99612}, year = {2025}, abstract = {We investigate the use of low-precision first-order methods (FOMs) within a fix-and-propagate (FP) framework for solving mixed-integer programming problems (MIPs). FOMs, using only matrix-vector products instead of matrix factorizations, are well suited for GPU acceleration and have recently gained more attention for their application to large-scale linear programming problems (LPs). We employ PDLP, a variant of the Primal-Dual Hybrid Gradient (PDHG) method specialized to LP problems, to solve the LP-relaxation of our MIPs to low accuracy. This solution is used to motivate fixings within our fix-and-propagate framework. We implemented four different FP variants using primal and dual LP solution information. We evaluate the performance of our heuristics on MIPLIB 2017, showcasing that the low-accuracy LP solution produced by the FOM does not lead to a loss in quality of the FP heuristic solutions when compared to a high-accuracy interior-point method LP solution. Further, we use our FP framework to produce high-accuracy solutions for large-scale (up to 243 million non-zeros and 8 million decision variables) unit-commitment energy-system optimization models created with the modeling framework REMix. For the largest problems, we can generate solutions with under 2\% primal-dual gap in less than 4 hours, whereas commercial solvers cannot generate feasible solutions within two days of runtime. This study represents the first successful application of FOMs in large-scale mixed-integer optimization, demonstrating their efficacy and establishing a foundation for future research in this domain.}, language = {en} } @misc{KempkeKuntKatamishetal.2025, author = {Kempke, Nils-Christian and Kunt, Tim and Katamish, Bassel and Vanaret, Charlie and Sasanpour, Shima and Clarner, Jan-Patrick and Koch, Thorsten}, title = {Developing heuristic solution techniques for large-scale unit commitment models}, issn = {1438-0064}, arxiv = {http://arxiv.org/abs/2502.19012}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-99555}, year = {2025}, abstract = {Shifting towards renewable energy sources and reducing carbon emissions necessitate sophisticated energy system planning, optimization, and extension. Energy systems optimization models (ESOMs) often form the basis for political and operational decision-making. ESOMs are frequently formulated as linear (LPs) and mixed-integer linear (MIP) problems. MIPs allow continuous and discrete decision variables. Consequently, they are substantially more expressive than LPs but also more challenging to solve. The ever-growing size and complexity of ESOMs take a toll on the computational time of state-of-the-art commercial solvers. Indeed, for large-scale ESOMs, solving the LP relaxation -- the basis of modern MIP solution algorithms -- can be very costly. These time requirements can render ESOM MIPs impractical for real-world applications. This article considers a set of large-scale decarbonization-focused unit commitment models with expansion decisions based on the REMix framework (up to 83 million variables and 900,000 discrete decision variables). For these particular instances, the solution to the LP relaxation and the MIP optimum lie close. Based on this observation, we investigate the application of relaxation-enforced neighborhood search (RENS), machine learning guided rounding, and a fix-and-propagate (FP) heuristic as a standalone solution method. Our approach generated feasible solutions 20 to 100 times faster than GUROBI, achieving comparable solution quality with primal-dual gaps as low as 1\% and up to 35\%. This enabled us to solve numerous scenarios without lowering the quality of our models. For some instances that Gurobi could not solve within two days, our FP method provided feasible solutions in under one hour.}, language = {en} } @misc{HaslerAmrheinKlindtetal.2017, author = {Hasler, Tim and Amrhein, Kilian and Klindt, Marco and Oltmanns, Elias and Peters-Kottig, Wolfgang}, title = {Backup ist KEINE Langzeitverf{\"u}gbarkeit}, doi = {10.12752/9954}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-99548}, year = {2017}, abstract = {Diese Handreichung im Flyerformat soll mit den verschiedenen Missverst{\"a}ndnissen aufr{\"a}umen, die einem im Alltag begegnen, wenn man es mit digitaler Langzeitverf{\"u}gbarkeit zu tun hat.}, language = {de} } @misc{Lindner2025, author = {Lindner, Niels}, title = {A Multi-Commodity Flow Heuristic for Integrated Periodic Timetabling for Railway Construction Sites}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-99449}, year = {2025}, abstract = {Rescheduling a railway system comprises many aspects, such as line planning, timetabling, track allocation, and vehicle scheduling. For periodic timetables, these features can be integrated into a single mixed-integer program extending the Periodic Event Scheduling Problem (PESP) with a routing component. We develop a multi-commodity-flow-based heuristic that allows to compute better solutions faster than a black-box MIP approach on real construction site scenarios on the S-Bahn Berlin network.}, language = {en} } @misc{PedersenLindnerRehfeldtetal.2025, author = {Pedersen, Jaap and Lindner, Niels and Rehfeldt, Daniel and Koch, Thorsten}, title = {Integrated Wind Farm Design: Optimizing Turbine Placement and Cable Routing with Wake Effects}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-99218}, year = {2025}, abstract = {An accelerated deployment of renewable energy sources is crucial for a successful transformation of the current energy system, with wind energy playing a key role in this transition. This study addresses the integrated wind farm layout and cable routing problem, a challenging nonlinear optimization problem. We model this problem as an extended version of the Quota Steiner Tree Problem (QSTP), optimizing turbine placement and network connectivity simultaneously to meet specified expansion targets. Our proposed approach accounts for the wake effect - a region of reduced wind speed induced by each installed turbine - and enforces minimum spacing between turbines. We introduce an exact solution framework in terms of the novel Quota Steiner Tree Problem with interference (QSTPI). By leveraging an interference-based splitting strategy, we develop an advanced solver capable of tackling large-scale problem instances. The presented approach outperforms generic state-of-the-art mixed integer programming solvers on our dataset by up to two orders of magnitude. Moreover, we demonstrate that our integrated method significantly reduces the costs in contrast to a sequential approach. Thus, we provide a planning tool that enhances existing planning methodologies for supporting a faster and cost-efficient expansion of wind energy.}, language = {en} } @misc{KempkeRehfeldtKoch2024, author = {Kempke, Nils-Christian and Rehfeldt, Daniel and Koch, Thorsten}, title = {A Massively Parallel Interior-Point-Method for Arrowhead Linear Programs}, issn = {1438-0064}, arxiv = {http://arxiv.org/abs/2412.07731}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-98829}, year = {2024}, abstract = {In practice, non-specialized interior point algorithms often cannot utilize the massively parallel compute resources offered by modern many- and multi-core compute platforms. However, efficient distributed solution techniques are required, especially for large-scale linear programs. This article describes a new decomposition technique for systems of linear equations implemented in the parallel interior-point solver PIPS-IPM++. The algorithm exploits a matrix structure commonly found in optimization problems: a doubly-bordered block-diagonal or arrowhead structure. This structure is preserved in the linear KKT systems solved during each iteration of the interior-point method. We present a hierarchical Schur complement decomposition that distributes and solves the linear optimization problem; it is designed for high-performance architectures and scales well with the availability of additional computing resources. The decomposition approach uses the border constraints' locality to decouple the factorization process. Our approach is motivated by large-scale unit-commitment problems. We demonstrate the performance of our method on a set of mid-to large-scale instances, some of which have more than 10^9 nonzeros in their constraint matrix.}, language = {en} } @misc{YuekselErguenLitzelPeng2024, author = {Yueksel-Erguen, Inci and Litzel, Ida and Peng, Hanqiu}, title = {Integrating Large Citation Datasets}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-98033}, year = {2024}, abstract = {This paper explores methods for building a comprehensive citation graph using big data techniques to evaluate scientific impact more accurately. Traditional citation metrics have limitations, and this work investigates merging large citation datasets to create a more accurate picture. Challenges of big data, like inconsistent data formats and lack of unique identifiers, are addressed through deduplication efforts, resulting in a streamlined and reliable merged dataset with over 119 million records and 1.4 billion citations. We demonstrate that merging large citation datasets builds a more accurate citation graph facilitating a more robust evaluation of scientific impact.}, language = {en} } @misc{LindnerBartoszukDebguptaetal.2024, author = {Lindner, Niels and Bartoszuk, Karolina and Debgupta, Srinwanti and Gering, Marie-Claire and Muschner, Christoph and Zittel, Janina}, title = {Warm-starting modeling to generate alternatives for energy transition paths in the Berlin-Brandenburg area}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-97835}, year = {2024}, abstract = {Energy system optimization models are key to investigate energy transition paths towards a decarbonized future. Since this approach comes with intrinsic uncertainties, it is insufficient to compute a single optimal solution assuming perfect foresight to provide a profound basis for decision makers. The paradigm of modeling to generate alternatives enables to explore the near-optimal solution space to a certain extent. However, large-scale energy models require a non-negligible computation time to be solved. We propose to use warm start methods to accelerate the process of finding close-to-optimal alternatives. In an extensive case study for the energy transition of the Berlin-Brandenburg area, we make use of the sector-coupled linear programming oemof-B3 model to analyze a scenario for the year 2050 with a resolution of one hour and 100\% reduction of greenhouse gas emissions. We demonstrate that we can actually achieve a significant computational speedup.}, language = {en} } @misc{RiedmuellerRivettaZittel2024, author = {Riedm{\"u}ller, Stephanie and Rivetta, Fabian and Zittel, Janina}, title = {Long-Term Multi-Objective Optimization for Integrated Unit Commitment and Investment Planning for District Heating Networks}, issn = {1438-0064}, doi = {10.1007/978-3-031-92575-7_33}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-97804}, year = {2024}, abstract = {The need to decarbonize the energy system has intensified the focus on district heating networks in urban and suburban areas. Therefore, exploring transformation pathways with reasonable trade-offs between economic viability and environmental goals became necessary. We introduce a network-flow-based model class integrating unit commitment and long-term investment planning for multi-energy systems. While the integration of unit commitment and investment planning has been applied to multi-energy systems, a formal introduction and suitability for the application of long-term portfolio planning of an energy provider on an urban scale has yet to be met. Based on mixed integer linear programming, the model bridges the gap between overly detailed industrial modeling tools not designed for computational efficiency at scale and rather abstract academic models. The formulation is tested on Berlin's district heating network. Hence, the challenge lies in a large number of variables and constraints and the coupling of time steps, for example, through investment decisions. A case study explores different solutions on the Pareto front defined by optimal trade-offs between minimizing costs and emissions through a lexicographic optimization approach. The resulting solution catalog can provide decision-makers valuable insights into feasible transformation pathways, highlighting distinctions between robust and target-dependent investments.}, language = {en} } @misc{EbertMasingLindneretal.2024, author = {Ebert, Patricia and Masing, Berenike and Lindner, Niels and Gleixner, Ambros}, title = {Sorting Criteria for Line-based Periodic Timetabling Heuristics}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-97826}, year = {2024}, abstract = {It is well-known that optimal solutions are notoriously hard to find for the Periodic Event Scheduling Problem (PESP), which is the standard mathematical formulation to optimize periodic timetables in public transport. We consider a class of incremental heuristics that have been demonstrated to be effective by Lindner and Liebchen (2023), however, for only one fixed sorting strategy of lines along which a solution is constructed. Thus, in this paper, we examine a variety of sortings based on the number, weight, weighted span, and lower bound of arcs, and test for each setting various combinations of the driving, dwelling, and transfer arcs of lines. Additionally, we assess the impact on the incremental extension of the event-activity network by minimizing resp. maximizing a connectivity measure between subsets of lines. We compare our 27 sortings on the railway instances of the benchmarking library PESPlib within the ConcurrentPESP solver framework. We are able to find five new incumbent solutions, resulting in improvements of up to 2\%.}, language = {en} } @misc{Kunt2023, type = {Master Thesis}, author = {Kunt, Tim}, title = {The n-Queens Problem in Higher Dimensions}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-96468}, pages = {84}, year = {2023}, abstract = {How many mutually non-attacking queens can be placed on a d-dimensional chessboard of size n? The n-queens problem in higher dimensions is a generalization of the well-known n-queens problem. We provide a comprehensive overview of theoretical results, bounds, solution methods, and the interconnectivity of the problem within topics of discrete optimization and combinatorics. We present an integer programming formulation of the n-queens problem in higher dimensions and several strengthenings through additional valid inequalities. Compared to recent benchmarks, we achieve a speedup in computational time between 15-70x over all instances of the integer programs. Our computational results prove optimality of certificates for several large instances. Breaking additional, previously unsolved instances with the proposed methods is likely possible. On the primal side, we further discuss heuristic approaches to constructing solutions that turn out to be optimal when compared to the IP. We conclude with preliminary results on the number and density of the solutions.}, language = {en} } @misc{YuekselErguenKochZittel2024, author = {Yueksel-Erguen, Inci and Koch, Thorsten and Zittel, Janina}, title = {Mathematical optimization based flow scenario generation for operational analysis of European gas transport networks based on open data}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-95789}, year = {2024}, abstract = {The decarbonization of the European energy system demands a rapid and comprehensive transformation while securing energy supplies at all times. Still, natural gas plays a crucial role in this process. Recent unexpected events forced drastic changes in gas routes throughout Europe. Therefore, operational-level analysis of the gas transport networks and technical capacities to cope with these transitions using unconventional scenarios has become essential. Unfortunately, data limitations often hinder such analyses. To overcome this challenge, we propose a mathematical model-based scenario generator that enables operational analysis of the European gas network using open data. Our approach focuses on the consistent analysis of specific partitions of the gas transport network, whose network topology data is readily available. We generate reproducible and consistent node-based gas in/out-flow scenarios for these defined network partitions to enable feasibility analysis and data quality assessment. Our proposed method is demonstrated through several applications that address the feasibility analysis and data quality assessment of the German gas transport network. By using open data and a mathematical modeling approach, our method allows for a more comprehensive understanding of the gas transport network's behavior and assists in decision-making during the transition to decarbonization.}, language = {en} } @misc{BolusaniBesanconBestuzhevaetal.2024, author = {Bolusani, Suresh and Besan{\c{c}}on, Mathieu and Bestuzheva, Ksenia and Chmiela, Antonia and Dion{\´i}sio, Jo{\~a}o and Donkiewicz, Tim and van Doornmalen, Jasper and Eifler, Leon and Ghannam, Mohammed and Gleixner, Ambros and Graczyk, Christoph and Halbig, Katrin and Hedtke, Ivo and Hoen, Alexander and Hojny, Christopher and van der Hulst, Rolf and Kamp, Dominik and Koch, Thorsten and Kofler, Kevin and Lentz, Jurgen and Manns, Julian and Mexi, Gioni and M{\"u}hmer, Erik and E. Pfetsch, Marc and Schl{\"o}sser, Franziska and Serrano, Felipe and Shinano, Yuji and Turner, Mark and Vigerske, Stefan and Weninger, Dieter and Xu, Liding}, title = {The SCIP Optimization Suite 9.0}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-95528}, year = {2024}, abstract = {The SCIP Optimization Suite provides a collection of software packages for mathematical optimization, centered around the constraint integer programming framework SCIP. This report discusses the enhancements and extensions included in the SCIP Optimization Suite 9.0. The updates in SCIP 9.0 include improved symmetry handling, additions and improvements of nonlinear handlers and primal heuristics, a new cut generator and two new cut selection schemes, a new branching rule, a new LP interface, and several bug fixes. The SCIP Optimization Suite 9.0 also features new Rust and C++ interfaces for SCIP, new Python interface for SoPlex, along with enhancements to existing interfaces. The SCIP Optimization Suite 9.0 also includes new and improved features in the LP solver SoPlex, the presolving library PaPILO, the parallel framework UG, the decomposition framework GCG, and the SCIP extension SCIP-SDP. These additions and enhancements have resulted in an overall performance improvement of SCIP in terms of solving time, number of nodes in the branch-and-bound tree, as well as the reliability of the solver.}, language = {en} } @misc{LindnerMasing2024, author = {Lindner, Niels and Masing, Berenike}, title = {SAT-Generated Initial Solutions for Integrated Line Planning and Turn-Sensitive Periodic Timetabling with Track Choice}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-94644}, year = {2024}, abstract = {Periodic timetabling is a challenging planning task in public transport. As safety requirements are crucial, track allocation is indispensable for validating the practical feasibility of a railway timetable. For busy stations with limited capacities, this requires a detailed planning of turnarounds. It is therefore desirable to integrate timetabling not only with track allocation, but also with vehicle scheduling and line planning. This is captured by the Integrated Line Planning and Turn-Sensitive Periodic Timetabling Problem with Track Choice, whose MIP formulation has been demonstrated to be effective for construction site railway rescheduling, as long as a good quality initial solution is available. In this paper, we discuss how to generate such a solution by extending the SAT formulation of the Periodic Event Scheduling Problem with track choice, track occupation, and minimum service frequency components. The SAT approach is superior to pure MIP on real-world instances of the S-Bahn Berlin network.}, language = {en} } @misc{Prause2023, author = {Prause, Felix}, title = {A Multi-Swap Heuristic for Rolling Stock Rotation Planning with Predictive Maintenance}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-93133}, year = {2023}, abstract = {We present a heuristic solution approach for the rolling stock rotation problem with predictive maintenance (RSRP-PdM). The task of this problem is to assign a sequence of trips to each of the vehicles and to schedule their maintenance such that all trips can be operated. Here, the health states of the vehicles are considered to be random variables distributed by a family of probability distribution functions, and the maintenance services should be scheduled based on the failure probability of the vehicles. The proposed algorithm first generates a solution by solving an integer linear program and then heuristically improves this solution by applying a local search procedure. For this purpose, the trips assigned to the vehicles are split up and recombined, whereby additional deadhead trips can be inserted between the partial assignments. Subse- quently, the maintenance is scheduled by solving a shortest path problem in a state-expanded version of a space-time graph restricted to the trips of the individual vehicles. The solution approach is tested and evaluated on a set of test instances based on real-world timetables.}, language = {en} } @misc{TurnerChmielaKochetal.2023, author = {Turner, Mark and Chmiela, Antonia and Koch, Thorsten and Winkler, Michael}, title = {PySCIPOpt-ML: Embedding Trained Machine Learning Models into Mixed-Integer Programs}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-93095}, year = {2023}, abstract = {A standard tool for modelling real-world optimisation problems is mixed-integer programming (MIP). However, for many of these problems there is either incomplete information describing variable relations, or the relations between variables are highly complex. To overcome both these hurdles, machine learning (ML) models are often used and embedded in the MIP as surrogate models to represent these relations. Due to the large amount of available ML frameworks, formulating ML models into MIPs is highly non-trivial. In this paper we propose a tool for the automatic MIP formulation of trained ML models, allowing easy integration of ML constraints into MIPs. In addition, we introduce a library of MIP instances with embedded ML constraints. The project is available at https://github.com/Opt-Mucca/PySCIPOpt-ML.}, language = {en} } @misc{EiflerNicolasThouveninGleixner2023, author = {Eifler, Leon and Nicolas-Thouvenin, Jules and Gleixner, Ambros}, title = {Combining Precision Boosting with LP Iterative Refinement for Exact Linear Optimization}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-92573}, year = {2023}, abstract = {This article studies a combination of the two state-of-the-art algorithms for the exact solution of linear programs (LPs) over the rational numbers, i.e., without any roundoff errors or numerical tolerances. By integrating the method of precision boosting inside an LP iterative refinement loop, the combined algorithm is able to leverage the strengths of both methods: the speed of LP iterative refinement, in particular in the majority of cases when a double-precision floating-point solver is able to compute approximate solutions with small errors, and the robustness of precision boosting whenever extended levels of precision become necessary. We compare the practical performance of the resulting algorithm with both puremethods on a large set of LPs and mixed-integer programs (MIPs). The results show that the combined algorithm solves more instances than a pure LP iterative refinement approach, while being faster than pure precision boosting. When embedded in an exact branch-and-cut framework for MIPs, the combined algorithm is able to reduce the number of failed calls to the exact LP solver to zero, while maintaining the speed of the pure LP iterative refinement approach.}, language = {en} } @misc{HaslerPetersKottigSchloesser2023, author = {Hasler, Tim and Peters-Kottig, Wolfgang and Schl{\"o}sser, Franziska}, title = {Software Management Plan developed in HPO-Navi}, doi = {10.12752/9250}, year = {2023}, abstract = {This publication comprises the Software Management Plan (SMP) developed in the HPO-Navi project. The project was funded in the Literature and Information System (LIS) track of the DFG with the aim of increasing the maturity level of scientific software under development, developing improved measures for the quality assurance of this software and for long-term availability. The Ubiquity Generator Framework (UG) software developed in the project provides a software infrastructure to make existing sequential implementations HPC-capable. The UG framework is of interest to developers of specialized optimization algorithms and can be used directly to solve specific problem classes in the field of scientific computing. Due to the naturally high software technology hurdles on HPC systems, UG was initially a highly specialized tool and could only be used to a limited extent without the involvement of the main developer. The central challenge of the project was to create a mechanism for the sustainable development and permanent provision and archiving of the research software. The aim was for UG to achieve the status of a "software product" with implementation of the following project content: - Documentation of the software: a description of the API and the simple connection of further basic solvers, installation instructions for various target platforms and a description of the structure and documentation of the source code as a basis for the distributed sustainable development of UG. - Development of missing user functions of UG: increased platform independence for shared memory parallelization and better logging function for the analysis and verification of results. - Development of a sample data management plan for future research projects that want to use UG and document their research results according to DFG standards for good scientific practice. - Quality assurance: by defining code guidelines, uniform concepts and criteria for the qualitative evaluation of new functions and implementing standards for code review and processes for continuous integration. A complementary goal was to improve the provision, accessibility and long-term reusability of the research software. - Use of an open Git server as a distributed development platform, provision of a download server for releases and sustainable storage of the software code and the associated meta-information. - Improved presentation and visibility through publication in publicly accessible repositories. This includes the prototypical extension of the OPUS 4 repository software widely used in Germany as a means of publishing software with a landing page that can be resolved via a DOI, and improved linking and presentation of UG in swMATH. - Digital long-term archiving: experimental inclusion of software code in an OAIS-compliant digital archiving system and evaluation of the approach in the areas of digital archiving and research data management.}, language = {en} } @misc{LoebelBorndoerferWeider2023, author = {L{\"o}bel, Fabian and Bornd{\"o}rfer, Ralf and Weider, Steffen}, title = {Non-Linear Battery Behavior in Electric Vehicle Scheduling Problems}, issn = {1438-0064}, doi = {10.1007/978-3-031-58405-3_53}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-92441}, year = {2023}, abstract = {The currently most popular approach to handle non-linear battery behavior for electric vehicle scheduling is to use a linear spline interpolation of the charge curve. We show that this can lead to approximate models that underestimate the charge duration and overestimate the state of charge, which is not desirable. While the error is of second order with respect to the interpolation step size, the associated mixed-integer linear programs do not scale well with the number of spline segments. It is therefore recommendable to use coarse interpolation grids adapted to the curvature of the charge curve, and to include sufficient safety margins to ensure solutions of approximate models remain feasible subjected to the exact charge curve.}, language = {en} } @misc{BortolettoLindner2023, author = {Bortoletto, Enrico and Lindner, Niels}, title = {Scaling and Rounding Periodic Event Scheduling Instances to Different Period Times}, issn = {1438-0064}, doi = {10.1007/978-3-031-58405-3_51}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-92315}, year = {2023}, abstract = {The Periodic Event Scheduling Problem (PESP) is a notoriously hard combinatorial optimization problem, essential for the design of periodic timetables in public transportation. The coefficients of the integer variables in the standard mixed integer linear programming formulations of PESP are the period time, e.g., 60 for a horizon of one hour with a resolution of one minute. In many application scenarios, lines with different frequencies have to be scheduled, leading to period times with many divisors. It then seems natural to consider derived instances, where the period time is a divisor of the original one, thereby smaller, and bounds are scaled and rounded accordingly. To this end, we identify two rounding schemes: wide and tight. We then discuss the approximation performance of both strategies, in theory and practice.}, language = {en} } @misc{LindnerLiebchen2023, author = {Lindner, Niels and Liebchen, Christian}, title = {Incremental Heuristics for Periodic Timetabling}, issn = {1438-0064}, doi = {10.1007/978-3-031-58405-3_59}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-92309}, year = {2023}, abstract = {We present incremental heuristics for the Periodic Event Scheduling Problem (PESP), the standard mathematical tool to optimize periodic timetables in public transport. The core of our method is to solve successively larger subinstances making use of previously found solutions. Introducing the technical notion of free stratifications, we formulate a general scheme for incremental heuristics for PESP. More practically, we use line and station information to create heuristics that add lines or stations one by one, and we evaluate these heuristics on instances of the benchmarking library PESPlib. This approach is indeed viable, and leads to new incumbent solutions for six PESPlib instances.}, language = {en} } @phdthesis{Miltenberger2023, author = {Miltenberger, Matthias}, title = {Linear Programming in MILP Solving - A Computational Perspective}, publisher = {Verlag Dr. Hut GmbH}, isbn = {9783843953238}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-91873}, pages = {237}, year = {2023}, abstract = {Mixed-integer linear programming (MILP) plays a crucial role in the field of mathematical optimization and is especially relevant for practical applications due to the broad range of problems that can be modeled in that fashion. The vast majority of MILP solvers employ the LP-based branch-and-cut approach. As the name suggests, the linear programming (LP) subproblems that need to be solved therein influence their behavior and performance significantly. This thesis explores the impact of various LP solvers as well as LP solving techniques on the constraint integer programming framework SCIP Optimization Suite. SCIP allows for comparisons between academic and open-source LP solvers like Clp and SoPlex, as well as commercially developed, high-end codes like CPLEX, Gurobi, and Xpress. We investigate how the overall performance and stability of an MILP solver can be improved by new algorithmic enhancements like LP solution polishing and persistent scaling that we have implemented in the LP solver SoPlex. The former decreases the fractionality of LP solutions by selecting another vertex on the optimal hyperplane of the LP relaxation, exploiting degeneracy. The latter provides better numerical properties for the LP solver throughout the MILP solving process by preserving and extending the initial scaling factors, effectively also improving the overall performance of SCIP. Both enhancement techniques are activated by default in the SCIP Optimization Suite. Additionally, we provide an analysis of numerical conditions in SCIP through the lens of the LP solver by comparing different measures and how these evolve during the different stages of the solving process. A side effect of our work on this topic was the development of TreeD: a new and convenient way of presenting the search tree interactively and animated in the three-dimensional space. This visualization technique facilitates a better understanding of the MILP solving process of SCIP. Furthermore, this thesis presents the various algorithmic techniques like the row representation and iterative refinement that are implemented in SoPlex and that distinguish the solver from other simplex-based codes. Although it is often not as performant as its competitors, SoPlex demonstrates the ongoing research efforts in the field of linear programming with the simplex method. Aside from that, we demonstrate the rapid prototyping of algorithmic ideas and modeling approaches via PySCIPOpt, the Python interface to the SCIP Optimization Suite. This tool allows for convenient access to SCIP's internal data structures from the user-friendly Python programming language to implement custom algorithms and extensions without any prior knowledge of SCIP's programming language C. TreeD is one such example, demonstrating the use of several Python libraries on top of SCIP. PySCIPOpt also provides an intuitive modeling layer to formulate problems directly in the code without having to utilize another modeling language or framework. All contributions presented in this thesis are readily accessible in source code in SCIP Optimization Suite or as separate projects on the public code-sharing platform GitHub.}, language = {en} } @misc{PrauseBorndoerfer2023, author = {Prause, Felix and Bornd{\"o}rfer, Ralf}, title = {Construction of a Test Library for the Rolling Stock Rotation Problem with Predictive Maintenance}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-91734}, year = {2023}, abstract = {We describe the development of a test library for the rolling stock rotation problem with predictive maintenance (RSRP-PdM). Our approach involves the utilization of genuine timetables from a private German railroad company. The generated instances incorporate probability distribution functions for modeling the health states of the vehicles and the considered trips possess varying degradation functions. RSRP-PdM involves assigning trips to a fleet of vehicles and scheduling their maintenance based on their individual health states. The goal is to minimize the total costs consisting of operational costs and the expected costs associated with vehicle failures. The failure probability is dependent on the health states of the vehicles, which are assumed to be random variables distributed by a family of probability distributions. Each distribution is represented by the parameters characterizing it and during the operation of the trips, these parameters get altered. Our approach incorporates non-linear degradation functions to describe the inference of the parameters but also linear ones could be applied. The resulting instances consist of the timetables of the individual lines that use the same vehicle type. Overall, we employ these assumptions and utilize open-source data to create a library of instances with varying difficulty. Our approach is vital for evaluating and comparing algorithms designed to solve the RSRP-PdM.}, language = {en} } @misc{TurnerBertholdBesancon2023, author = {Turner, Mark and Berthold, Timo and Besan{\c{c}}on, Mathieu}, title = {A Context-Aware Cutting Plane Selection Algorithm for Mixed-Integer Programming}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-91691}, year = {2023}, abstract = {The current cut selection algorithm used in mixed-integer programming solvers has remained largely unchanged since its creation. In this paper, we propose a set of new cut scoring measures, cut filtering techniques, and stopping criteria, extending the current state-of-the-art algorithm and obtaining a 5\\% performance improvement for SCIP over the MIPLIB 2017 benchmark set.}, language = {en} } @misc{BorndoerferDaneckerWeiser2023, author = {Bornd{\"o}rfer, Ralf and Danecker, Fabian and Weiser, Martin}, title = {Convergence Properties of Newton's Method for Globally Optimal Free Flight Trajectory Optimization}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-91309}, year = {2023}, abstract = {The algorithmic efficiency of Newton-based methods for Free Flight Trajectory Optimization is heavily influenced by the size of the domain of convergence. We provide numerical evidence that the convergence radius is much larger in practice than what the theoretical worst case bounds suggest. The algorithm can be further improved by a convergence-enhancing domain decomposition.}, language = {en} } @misc{PetersKottigBrandtnerChristofetal.2023, author = {Peters-Kottig, Wolfgang and Brandtner, Andreas and Christof, J{\"u}rgen and Hauffe, Yves and Koch, Thorsten and Kuo, Leslie and Krause, Katja and M{\"u}ller, Anja and Seeliger, Frank and Stanek, Ursula and St{\"o}hr, Elena and Vetter, Danilo and Winkler, Alexander and Zeyns, Andrea and Rusch, Beate}, title = {KOBV Jahresbericht 2021-2022}, volume = {2021-2022}, address = {Berlin}, organization = {Kooperativer Bibliotheksverbund Berlin-Brandenburg}, issn = {0934-5892}, doi = {10.12752/9116}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-91162}, year = {2023}, language = {de} } @misc{LindnerMasing2023, author = {Lindner, Niels and Masing, Berenike}, title = {On the Split Closure of the Periodic Timetabling Polytope}, issn = {1438-0064}, doi = {10.1007/s10107-025-02220-5}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-91156}, year = {2023}, abstract = {The Periodic Event Scheduling Problem (PESP) is the central mathematical tool for periodic timetable optimization in public transport. PESP can be formulated in several ways as a mixed-integer linear program with typically general integer variables. We investigate the split closure of these formulations and show that split inequalities are identical with the recently introduced flip inequalities. While split inequalities are a general mixed-integer programming technique, flip inequalities are defined in purely combinatorial terms, namely cycles and arc sets of the digraph underlying the PESP instance. It is known that flip inequalities can be separated in pseudo-polynomial time. We prove that this is best possible unless P \$=\$ NP, but also observe that the complexity becomes linear-time if the cycle defining the flip inequality is fixed. Moreover, introducing mixed-integer-compatible maps, we compare the split closures of different formulations, and show that reformulation or binarization by subdivision do not lead to stronger split closures. Finally, we estimate computationally how much of the optimality gap of the instances of the benchmark library PESPlib can be closed exclusively by split cuts, and provide better dual bounds for five instances.}, language = {en} } @misc{TurnerBertholdBesanconetal.2023, author = {Turner, Mark and Berthold, Timo and Besan{\c{c}}on, Mathieu and Koch, Thorsten}, title = {Branching via Cutting Plane Selection: Improving Hybrid Branching}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-91120}, year = {2023}, abstract = {Cutting planes and branching are two of the most important algorithms for solving mixed-integer linear programs. For both algorithms, disjunctions play an important role, being used both as branching candidates and as the foundation for some cutting planes. We relate branching decisions and cutting planes to each other through the underlying disjunctions that they are based on, with a focus on Gomory mixed-integer cuts and their corresponding split disjunctions. We show that selecting branching decisions based on quality measures of Gomory mixed-integer cuts leads to relatively small branch-and-bound trees, and that the result improves when using cuts that more accurately represent the branching decisions. Finally, we show how the history of previously computed Gomory mixed-integer cuts can be used to improve the performance of the state-of-the-art hybrid branching rule of SCIP. Our results show a 4\% decrease in solve time, and an 8\% decrease in number of nodes over affected instances of MIPLIB 2017.}, language = {en} } @misc{Bautz2023, type = {Master Thesis}, author = {Bautz, Lisa}, title = {Unsupervised Shape Correspondence Estimation for Anatomical Shapes}, pages = {83}, year = {2023}, abstract = {The concept of shape correspondence describes a relation between two or more shapes of the same class. It often consists of a mapping between points on semantically similar locations of all shapes. One possible application for shape correspondence in medicine is the automatic location of anatomical landmarks. Another popular application is the construction of statistical shape models. These models are an established way to represent geometric variation of anatomical shapes in a compact way. Possible applications range from the generation of shapes and reconstruction tasks to disease classification. This thesis aims to investigate unsupervised methods that can be used to estimate such a correspondence on anatomical shapes. While most methods used in the medical domain focus on classical optimization algorithms to establish correspondence, the broader computer vision domain developed a versatile field of data-driven methods. Recently, the new shape model FlowSSM was introduced, which does not require predefined correspondences for training as it generates them itself. As the performance of the shape model is quite competitive, it is natural to assume that the generated correspondences are of high quality as well. For this reason, we evaluate the quality of the correspondences generated by FlowSSM within this thesis. Furthermore, we modify the method by adding a second loss term that minimizes geodesic distortions. This is done to favor isometric deformations which can lead to better correspondences. We compare the results with two established methods from the medical domain, LDDMM and Meshmonk. Furthermore, we investigate the performance of a fourth method called Neuromoph. This data-driven method comes from the wider computer vision field and was not tested on anatomical data yet. All methods are evaluated with a set of different metrics. This includes metrics to assess the quality of the resulting meshes, a sparse correspondence error on anatomical landmarks, and metrics to measure the quality of the resulting shape models. Furthermore, we test all methods on three datasets with different degrees of geometric variation, namely liver, distal femur and face. We show that FlowSSM produces correspondences with state-of-the-art quality. Moreover, our modification further improved the quality of correspondences at a global level. Nevertheless, there is no clear ranking between all methods, as the results differ between metrics and datasets. Thereby, we can show that there are different qualities to a proper correspondence which are reflected in the different metrics. It is therefore strongly recommendable to choose a correspondence estimation method specifically for the problem at hand.}, language = {en} } @misc{TjusilaBesanconTurneretal.2023, author = {Tjusila, Gennesaret and Besancon, Mathieu and Turner, Mark and Koch, Thorsten}, title = {How Many Clues To Give? A Bilevel Formulation For The Minimum Sudoku Clue Problem}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-90902}, year = {2023}, abstract = {It has been shown that any 9 by 9 Sudoku puzzle must contain at least 17 clues to have a unique solution. This paper investigates the more specific question: given a particular completed Sudoku grid, what is the minimum number of clues in any puzzle whose unique solution is the given grid? We call this problem the Minimum Sudoku Clue Problem (MSCP). We formulate MSCP as a binary bilevel linear program, present a class of globally valid inequalities, and provide a computational study on 50 MSCP instances of 9 by 9 Sudoku grids. Using a general bilevel solver, we solve 95\\% of instances to optimality, and show that the solution process benefits from the addition of a moderate amount of inequalities. Finally, we extend the proposed model to other combinatorial problems in which uniqueness of the solution is of interest.}, language = {en} } @misc{PedersenWeinandSyranidouetal.2023, author = {Pedersen, Jaap and Weinand, Jann Michael and Syranidou, Chloi and Rehfeldt, Daniel}, title = {An efficient solver for multi-objective onshore wind farm siting and network integration}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-90590}, year = {2023}, abstract = {Existing planning approaches for onshore wind farm siting and network integration often do not meet minimum cost solutions or social and environmental considerations. In this paper, we develop an approach for the multi-objective optimization of turbine locations and their network connection using a Quota Steiner tree problem. Applying a novel transformation on a known directed cut formulation, reduction techniques, and heuristics, we design an exact solver that makes large problem instances solvable and outperforms generic MIP solvers. Although our case studies in selected regions of Germany show large trade-offs between the objective criteria of cost and landscape impact, small burdens on one criterion can significantly improve the other criteria. In addition, we demonstrate that contrary to many approaches for exclusive turbine siting, network integration must be simultaneously optimized in order to avoid excessive costs or landscape impacts in the course of a wind farm project. Our novel problem formulation and the developed solver can assist planners in decision making and help optimize wind farms in large regions in the future.}, language = {en} } @misc{EiflerGleixner2023, author = {Eifler, Leon and Gleixner, Ambros}, title = {Safe and Verified Gomory Mixed Integer Cuts in a Rational MIP Framework}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-90159}, year = {2023}, abstract = {This paper is concerned with the exact solution of mixed-integer programs (MIPs) over the rational numbers, i.e., without any roundoff errors and error tolerances. Here, one computational bottleneck that should be avoided whenever possible is to employ large-scale symbolic computations. Instead it is often possible to use safe directed rounding methods, e.g., to generate provably correct dual bounds. In this work, we continue to leverage this paradigm and extend an exact branch-and-bound framework by separation routines for safe cutting planes, based on the approach first introduced by Cook, Dash, Fukasawa, and Goycoolea in 2009. Constraints are aggregated safely using approximate dual multipliers from an LP solve, followed by mixed-integer rounding to generate provably valid, although slightly weaker inequalities. We generalize this approach to problem data that is not representable in floating-point arithmetic, add routines for controlling the encoding length of the resulting cutting planes, and show how these cutting planes can be verified according to the VIPR certificate standard. Furthermore, we analyze the performance impact of these cutting planes in the context of an exact MIP framework, showing that we can solve 21.5\% more instances and reduce solving times by 26.8\% on the MIPLIB 2017 benchmark test set.}, language = {en} } @misc{BorndoerferDaneckerWeiser2023, author = {Bornd{\"o}rfer, Ralf and Danecker, Fabian and Weiser, Martin}, title = {Newton's Method for Global Free Flight Trajectory Optimization}, doi = {10.12752/8987}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-89876}, year = {2023}, abstract = {Globally optimal free flight trajectory optimization can be achieved with a combination of discrete and continuous optimization. A key requirement is that Newton's method for continuous optimization converges in a sufficiently large neighborhood around a minimizer. We show in this paper that, under certain assumptions, this is the case.}, language = {en} } @misc{VohraHarthIsoeetal.2023, author = {Vohra, Sumit Kumar and Harth, Philipp and Isoe, Yasuko and Bahl, Armin and Fotowat, Haleh and Engert, Florian and Hege, Hans-Christian and Baum, Daniel}, title = {A Visual Interface for Exploring Hypotheses about Neural Circuits}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-89932}, year = {2023}, abstract = {One of the fundamental problems in neurobiological research is to understand how neural circuits generate behaviors in response to sensory stimuli. Elucidating such neural circuits requires anatomical and functional information about the neurons that are active during the processing of the sensory information and generation of the respective response, as well as an identification of the connections between these neurons. With modern imaging techniques, both morphological properties of individual neurons as well as functional information related to sensory processing, information integration and behavior can be obtained. Given the resulting information, neurobiologists are faced with the task of identifying the anatomical structures down to individual neurons that are linked to the studied behavior and the processing of the respective sensory stimuli. Here, we present a novel interactive tool that assists neurobiologists in the aforementioned task by allowing them to extract hypothetical neural circuits constrained by anatomical and functional data. Our approach is based on two types of structural data: brain regions that are anatomically or functionally defined, and morphologies of individual neurons. Both types of structural data are interlinked and augmented with additional information. The presented tool allows the expert user to identify neurons using Boolean queries. The interactive formulation of these queries is supported by linked views, using, among other things, two novel 2D abstractions of neural circuits. The approach was validated in two case studies investigating the neural basis of vision-based behavioral responses in zebrafish larvae. Despite this particular application, we believe that the presented tool will be of general interest for exploring hypotheses about neural circuits in other species, genera and taxa.}, language = {en} } @misc{MasingLindnerEbert2023, author = {Masing, Berenike and Lindner, Niels and Ebert, Patricia}, title = {Forward and Line-Based Cycle Bases for Periodic Timetabling}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-89731}, year = {2023}, abstract = {The optimization of periodic timetables is an indispensable planning task in public transport. Although the periodic event scheduling problem (PESP) provides an elegant mathematical formulation of the periodic timetabling problem that led to many insights for primal heuristics, it is notoriously hard to solve to optimality. One reason is that for the standard mixed-integer linear programming formulations, linear programming relaxations are weak and the integer variables are of pure technical nature and in general do not correlate with the objective value. While the first problem has been addressed by developing several families of cutting planes, we focus on the second aspect. We discuss integral forward cycle bases as a concept to compute improved dual bounds for PESP instances. To this end, we develop the theory of forward cycle bases on general digraphs. Specifically for the application of timetabling, we devise a generic procedure to construct line-based event-activity networks, and give a simple recipe for an integral forward cycle basis on such networks. Finally, we analyze the 16 railway instances of the benchmark library PESPlib, match them to the line-based structure and use forward cycle bases to compute better dual bounds for 14 out of the 16 instances.}, language = {en} } @misc{SchieweGoerigkLindner2023, author = {Schiewe, Philine and Goerigk, Marc and Lindner, Niels}, title = {Introducing TimPassLib - A library for integrated periodic timetabling and passenger routing}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-89741}, year = {2023}, abstract = {Classic models to derive a timetable for public transport often face a chicken-and-egg situation: A good timetable should offer passengers routes with small travel times, but the route choice of passengers depends on the timetable. While models that fix passenger routes were frequently considered in the literature, integrated models that simultaneously optimize timetables and passenger routes have seen increasing attention lately. This creates a growing need for a set of instances that allows to test and compare new algorithmic developments for the integrated problem. Our paper addresses this requirement by presenting TimPassLib, a new benchmark library of instances for integrated periodic timetabling and passenger routing.}, language = {en} } @misc{PrauseBorndoerferGrimmetal.2023, author = {Prause, Felix and Bornd{\"o}rfer, Ralf and Grimm, Boris and Tesch, Alexander}, title = {Approximating the RSRP with Predictive Maintenance}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-89531}, year = {2023}, abstract = {We study the solution of the rolling stock rotation problem with predictive maintenance (RSRP-PM) by an iterative refinement approach that is based on a state-expanded event-graph. In this graph, the states are parameters of a failure distribution, and paths correspond to vehicle rotations with associated health state approximations. An optimal set of paths including maintenance can be computed by solving an integer linear program. Afterwards, the graph is refined and the procedure repeated. An associated linear program gives rise to a lower bound that can be used to determine the solution quality. Computational results for two instances derived from real world timetables of a German railway company are presented. The results show the effectiveness of the approach and the quality of the solutions.}, language = {en} } @misc{BestuzhevaVoelkerGleixner2023, author = {Bestuzheva, Ksenia and V{\"o}lker, Helena and Gleixner, Ambros}, title = {Strengthening SONC Relaxations with Constraints Derived from Variable Bounds}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-89510}, year = {2023}, abstract = {Nonnegativity certificates can be used to obtain tight dual bounds for polynomial optimization problems. Hierarchies of certificate-based relaxations ensure convergence to the global optimum, but higher levels of such hierarchies can become very computationally expensive, and the well-known sums of squares hierarchies scale poorly with the degree of the polynomials. This has motivated research into alternative certificates and approaches to global optimization. We consider sums of nonnegative circuit polynomials (SONC) certificates, which are well-suited for sparse problems since the computational cost depends on the number of terms in the polynomials and does not depend on the degrees of the polynomials. We propose a method that guarantees that given finite variable domains, a SONC relaxation will yield a finite dual bound. This method opens up a new approach to utilizing variable bounds in SONC-based methods, which is particularly crucial for integrating SONC relaxations into branch-and-bound algorithms. We report on computational experiments with incorporating SONC relaxations into the spatial branch-and-bound algorithm of the mixed-integer nonlinear programming framework SCIP. Applying our strengthening method increases the number of instances where the SONC relaxation of the root node yielded a finite dual bound from 9 to 330 out of 349 instances in the test set.}, language = {en} } @misc{BestuzhevaChmielaMuelleretal.2023, author = {Bestuzheva, Ksenia and Chmiela, Antonia and M{\"u}ller, Benjamin and Serrano, Felipe and Vigerske, Stefan and Wegscheider, Fabian}, title = {Global Optimization of Mixed-Integer Nonlinear Programs with SCIP 8.0}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-89348}, year = {2023}, abstract = {For over ten years, the constraint integer programming framework SCIP has been extended by capabilities for the solution of convex and nonconvex mixed-integer nonlinear programs (MINLPs). With the recently published version~8.0, these capabilities have been largely reworked and extended. This paper discusses the motivations for recent changes and provides an overview of features that are particular to MINLP solving in SCIP. Further, difficulties in benchmarking global MINLP solvers are discussed and a comparison with several state-of-the-art global MINLP solvers is provided.}, language = {en} } @misc{Paskin2022, type = {Master Thesis}, author = {Paskin, Martha}, title = {Estimating 3D Shape of the Head Skeleton of Basking Sharks Using Annotated Landmarks on a 2D Image}, year = {2022}, abstract = {Basking sharks are thought to be one of the most efficient filter-feeding fish in terms of the throughput of water filtered through their gills. Details about the underlying morphology of their branchial region have not been studied due to various challenges in acquiring real-world data. The present thesis aims to facilitate this, by developing a mathematical shape model which constructs the 3D structure of the head skeleton of a basking shark using annotated landmarks on a single 2D image. This is an ill-posed problem as estimating the depth of a 3D object from a single 2D view is, in general, not possible. To reduce this ambiguity, we create a set of pre-defined training shapes in 3D from CT scans of basking sharks. First, the damaged structures of the sharks in the scans are corrected via solving a set of optimization problems, before using them as accurate 3D representations of the object. Then, two approaches are employed for the 2D-to-3D shape fitting problem-an Active Shape Model approach and a Kendall's Shape Space approach. The former represents a shape as a point on a high-dimensional Euclidean space, whereas the latter represents a shape as an equivalence class of points in this Euclidean space. Kendall's shape space approach is a novel technique that has not yet been applied in this context, and a comprehensive comparison of the two approaches suggests this approach to be superior for the problem at hand. This can be credited to an improved interpolation of the training shapes.}, language = {en} } @misc{TurnerBertholdBesanconetal.2022, author = {Turner, Mark and Berthold, Timo and Besan{\c{c}}on, Mathieu and Koch, Thorsten}, title = {Cutting Plane Selection with Analytic Centers and Multiregression}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-89065}, year = {2022}, abstract = {Cutting planes are a crucial component of state-of-the-art mixed-integer programming solvers, with the choice of which subset of cuts to add being vital for solver performance. We propose new distance-based measures to qualify the value of a cut by quantifying the extent to which it separates relevant parts of the relaxed feasible set. For this purpose, we use the analytic centers of the relaxation polytope or of its optimal face, as well as alternative optimal solutions of the linear programming relaxation. We assess the impact of the choice of distance measure on root node performance and throughout the whole branch-and-bound tree, comparing our measures against those prevalent in the literature. Finally, by a multi-output regression, we predict the relative performance of each measure, using static features readily available before the separation process. Our results indicate that analytic center-based methods help to significantly reduce the number of branch-and-bound nodes needed to explore the search space and that our multiregression approach can further improve on any individual method.}, language = {en} } @misc{SchuetteKlusHartmann2022, author = {Sch{\"u}tte, Christof and Klus, Stefan and Hartmann, Carsten}, title = {Overcoming the Timescale Barrier in Molecular Dynamics: Transfer Operators, Variational Principles, and Machine Learning}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-88637}, year = {2022}, abstract = {One of the main challenges in molecular dynamics is overcoming the "timescale barrier", a phrase used to describe that in many realistic molecular systems, biologically important rare transitions occur on timescales that are not accessible to direct numerical simulation, not even on the largest or specifically dedicated supercomputers. This article discusses how to circumvent the timescale barrier by a collection of transfer operator-based techniques that have emerged from dynamical systems theory, numerical mathematics, and machine learning over the last two decades. We will focus on how transfer operators can be used to approximate the dynamical behavior on long timescales, review the introduction of this approach into molecular dynamics, and outline the respective theory as well as the algorithmic development from the early numerics-based methods, via variational reformulations, to modern data-based techniques utilizing and improving concepts from machine learning. Furthermore, its relation to rare event simulation techniques will be explained, revealing a broad equivalence of variational principles for long-time quantities in MD. The article will mainly take a mathematical perspective and will leave the application to real-world molecular systems to the more than 1000 research articles already written on this subject.}, language = {en} } @misc{MasingLindnerLiebchen2022, author = {Masing, Berenike and Lindner, Niels and Liebchen, Christian}, title = {Periodic Timetabling with Integrated Track Choice for Railway Construction Sites}, issn = {1438-0064}, doi = {10.1016/j.jrtpm.2023.100416}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-88626}, year = {2022}, abstract = {We propose a mixed-integer linear programming model to generate and optimize periodic timetables with integrated track choice in the context of railway construction sites. When a section of a railway network becomes unavailable, the nearby areas are typically operated close to their capacity limits, and hence carefully modeling headways and allowing flexible routings becomes vital. We therefore discuss first how to integrate headway constraints into the Periodic Event Scheduling Problem (PESP) that do not only prevent overtaking, but also guarantee conflict-free timetables in general and particularly inside stations. Secondly, we introduce a turn-sensitive event-activity network, which is able to integrate routing alternatives for turnarounds at stations, e.g., turning at a platform vs. at a pocket track for metro-like systems. We propose several model formulations to include track choice, and finally evaluate them on six real construction site scenarios on the S-Bahn Berlin network.}, language = {en} } @misc{BertholdMexiSalvagnin2022, author = {Berthold, Timo and Mexi, Gioni and Salvagnin, Domenico}, title = {Using Multiple Reference Vectors and Objective Scaling in the Feasibility Pump}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-88513}, year = {2022}, abstract = {The Feasibility Pump (FP) is one of the best-known primal heuristics for mixed-integer programming (MIP): more than 15 papers suggested various modifications of all of its steps. So far, no variant considered information across multiple iterations, but all instead maintained the principle to optimize towards a single reference integer point. In this paper, we evaluate the usage of multiple reference vectors in all stages of the FP algorithm. In particular, we use LP-feasible vectors obtained during the main loop to tighten the variable domains before entering the computationally expensive enumeration stage. Moreover, we consider multiple integer reference vectors to explore further optimizing directions and introduce alternative objective scaling terms to balance the contributions of the distance functions and the original MIP objective. Our computational experiments demonstrate that the new method can improve performance on general MIP test sets. In detail, our modifications provide a 29.3\% solution quality improvement and 4.0\% running time improvement in an embedded setting, needing 16.0\% fewer iterations over a large test set of MIP instances. In addition, the method's success rate increases considerably within the first few iterations. In a standalone setting, we also observe a moderate performance improvement, which makes our version of FP suitable for the two main use-cases of the algorithm.}, language = {en} } @misc{BestuzhevaGleixnerVoelker2022, author = {Bestuzheva, Ksenia and Gleixner, Ambros and V{\"o}lker, Helena}, title = {Strengthening SONC Relaxations with Constraints Derived from Variable Bounds}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-88306}, year = {2022}, abstract = {Certificates of polynomial nonnegativity can be used to obtain tight dual bounds for polynomial optimization problems. We consider Sums of Nonnegative Circuit (SONC) polynomials certificates, which are well suited for sparse problems since the computational cost depends only on the number of terms in the polynomials and does not depend on the degrees of the polynomials. This work is a first step to integrating SONC-based relaxations of polynomial problems into a branch-and-bound algorithm. To this end, the SONC relaxation for constrained optimization problems is extended in order to better utilize variable bounds, since this property is key for the success of a relaxation in the context of branch-and-bound. Computational experiments show that the proposed extension is crucial for making the SONC relaxations applicable to most constrained polynomial optimization problems and for integrating the two approaches.}, language = {en} } @misc{Klimpel2022, author = {Klimpel, Paul}, title = {In Bewegung. Die Rechtsfibel f{\"u}r Digitalisierungsprojekte in Kulturerbe-Einrichtungen}, editor = {Lehnert, Katrin and M{\"u}ller, Anja and Rauchut, Franziska and Salewski, Laura and Urgast, Steff}, edition = {1. Auflage}, organization = {iRights Law}, isbn = {978-3-00-074039-8}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-86485}, pages = {164}, year = {2022}, abstract = {Mitte 2021 bescherte die Urheberrechtsreform neue Chancen f{\"u}r den (offenen) Zugang zum kulturellen Erbe. Die Reform brachte wichtige Ver{\"a}nderungen der rechtlichen Rahmenbedingungen f{\"u}r die Digitalisierung des kulturellen Erbes mit sich. Der Schutz der Gemeinfreiheit f{\"u}r digitale Reproduktionen wurde festgeschrieben, neue Regelungen erm{\"o}glichen die Onlinestellung „nicht verf{\"u}gbarer Werke" durch {\"o}ffentliche Einrichtungen des Kulturerbes und erstmals k{\"o}nnen nun auch in Deutschland erweiterte kollektive Lizenzen umgesetzt werden. Dr. Paul Klimpel (iRights Law) hat die Neuerungen des Urheber*innenrechtsgesetzes (UrhG) in dieser Publikation in den urheberrechtlichen Gesamtkontext eingeordnet. Die Rechtsfibel soll als Orientierungshilfe f{\"u}r die Mitarbeiter*innen in den Kulturinstitutionen dienen. Herausgeber*innen sind das Digitale Deutsche Frauenarchiv (DDF) und das Forschungs- und Kompetenzzentrum Digitalisierung Berlin (digiS).}, subject = {4062127-3}, language = {de} } @misc{RehfeldtFujisawaKochetal.2022, author = {Rehfeldt, Daniel and Fujisawa, Katsuki and Koch, Thorsten and Nakao, Masahiro and Shinano, Yuji}, title = {Computing single-source shortest paths on graphs with over 8 trillion edges}, issn = {1438-0064}, doi = {10.12752/8818}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-88180}, year = {2022}, abstract = {This paper introduces an implementation for solving the single-source shortest path problem on distributed-memory machines. It is tailored to power-law graphs and scales to trillions of edges. The new implementation reached 2nd and 10th place in the latest Graph500 benchmark in June 2022 and handled the largest and second-largest graphs among all participants.}, language = {en} } @misc{StraubeWinkelmannHoefling2022, author = {Straube, Arthur and Winkelmann, Stefanie and H{\"o}fling, Felix}, title = {Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles}, issn = {1438-0064}, doi = {10.12752/8817}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-88179}, year = {2022}, abstract = {Our theoretical study concerns an urea-urease-based pH oscillator confined to giant lipid vesicles. Under suitable conditions, differential transport of urea and hydrogen ion across the unilamellar vesicle membrane periodically resets the pH clock that switches the system from acid to basic, resulting in self-sustained oscillations. We analyse the structure of the limit cycle, which controls the dynamics for giant vesicles and dominates the strongly stochastic oscillations in small vesicles of submicrometer size. To this end, we derive reduced models, amenable to analytic treatments, and show that the accuracy of predictions, including the period of oscillations, is highly sensitive to the choice of the reduction scheme. In particular, we suggest an accurate two-variable model and show its equivalence to a three-variable model that admits an interpretation in terms of a chemical reaction network. The accurate description of a single pH oscillator appears crucial for rationalizing experiments and understanding communication of vesicles and synchronization of rhythms.}, language = {en} } @misc{OPUS4-8753, title = {Annual Report 2021}, volume = {2021}, organization = {Konrad-Zuse-Zentrum f{\"u}r Informationstechnik Berlin}, issn = {0934-5892}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-87537}, pages = {104}, year = {2022}, language = {en} } @misc{YuekselErguenMostWyrwolletal.2022, author = {Yueksel-Erguen, Inci and Most, Dieter and Wyrwoll, Lothar and Schmitt, Carlo and Zittel, Janina}, title = {Modeling the transition of the multimodal pan-European energy system including an integrated analysis of electricity and gas transport}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-87774}, year = {2022}, abstract = {The European energy system has been through a fundamental transformation since the Paris Agreement to reduce greenhouse gas emissions. The transition involves several energy-generating and consuming sectors emphasizing sector coupling. The increase in the share of renewable energy sources has revealed the need for flexibility in the electri city grid. Thus, holistic planning of pathways towards decarbonized energy systems also involves assessing the gas infrastructure to provide such a flexibility and support for the security of supply. In this paper, we propose a workflow to investigate such optimal energy transition pathways considering sector coupling. This workflow involves an integrated operational analysis of the electricity market, its transmission grid, and the gas grid in high spatio-temporal resolution. In a case study on a pan-European scale between 2020-2050, we show that carbon neutrality can be reached within feasible additional costs and in time. However, the manifestation of the potential pathways strongly depends on political and technological constraints. Sector coupling acts as an enabler of cross-border cooperation to achieve both, decarbonization and security of supply.}, language = {en} } @misc{Franz2019, type = {Master Thesis}, author = {Franz, Henriette}, title = {Connected Subgraphs with Budget Constraints: Formulations and Algorithms}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-87792}, year = {2019}, language = {en} } @misc{ClarnerTawfikKochetal.2022, author = {Clarner, Jan-Patrick and Tawfik, Christine and Koch, Thorsten and Zittel, Janina}, title = {Network-induced Unit Commitment - A model class for investment and production portfolio planning for multi-energy systems}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-87607}, year = {2022}, abstract = {In light of the energy transition production planning of future decarbonized energy systems lead to very large and complex optimization problems. A widely used modeling paradigm for modeling and solving such problems is mathematical programming. While there are various scientific energy system models and modeling tools, most of them do not provide the necessary level of detail or the modeling flexibility to be applicable for industrial usage. Industrial modeling tools, on the other hand, provide a high level of detail and modeling flexibility. However, those models often exhibit a size and complexity that restricts their scope to a time horizon of several months, severely complicating long-term planning. As a remedy, we propose a model class that is detailed enough for real-world usage but still compact enough for long-term planning. The model class is based on a generalized unit commitment problem on a network with investment decisions. The focus lies on the topological dependency of different energy production and transportation units.}, language = {en} } @misc{PedersenLeKochetal.2022, author = {Pedersen, Jaap and Le, Thi Thai and Koch, Thorsten and Zittel, Janina}, title = {Optimal discrete pipe sizing for tree-shaped CO2 networks}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-87574}, year = {2022}, abstract = {While energy-intensive industries like the steel industry plan to switch to renewable energy sources, other industries, such as the cement industry, have to rely on carbon capture storage and utilization technologies to reduce the inevitable carbon dioxide (CO2) emissions of their production processes. In this context, we investigate the problem of finding optimal pipeline diameters from a discrete set of diameters for a tree-shaped network transporting captured CO2 from multiple sources to a single sink. The general problem of optimizing arc capacities in potential-based fluid networks is a challenging mixed-integer nonlinear program. Additionally, the behaviour of CO2 is highly sensitive and nonlinear regarding temperature and pressure changes. We propose an iterative algorithm splitting the problem into two parts: a) the pipe-sizing problem under a fixed supply scenario and temperature distribution and b) the thermophysical modelling including mixing effects, the Joule-Thomson effect, and heat exchange with the surrounding environment. We show the effectiveness of our approach by applying our algorithm to a real-world network planning problem for a CO2 network in Western Germany.}, language = {en} } @misc{BortolettoLindnerMasing2022, author = {Bortoletto, Enrico and Lindner, Niels and Masing, Berenike}, title = {Tropical Neighbourhood Search: A New Heuristic for Periodic Timetabling}, issn = {1438-0064}, doi = {10.4230/OASIcs.ATMOS.2022.3}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-87385}, year = {2022}, abstract = {Periodic timetabling is a central aspect of both the long-term organization and the day-to-day operations of a public transportation system. The Periodic Event Scheduling Problem (PESP), the combinatorial optimization problem that forms the mathematical basis of periodic timetabling, is an extremely hard problem, for which optimal solutions are hardly ever found in practice. The most prominent solving strategies today are based on mixed-integer programming, and there is a concurrent PESP solver employing a wide range of heuristics [3]. We present tropical neighborhood search (tns), a novel PESP heuristic. The method is based on the relations between periodic timetabling and tropical geometry [4]. We implement tns into the concurrent solver, and test it on instances of the benchmarking library PESPlib. The inclusion of tns turns out to be quite beneficial to the solver: tns is able to escape local optima for the modulo network simplex algorithm, and the overall share of improvement coming from tns is substantial compared to the other methods available in the solver. Finally, we provide better primal bounds for five PESPlib instances.}, language = {en} } @misc{NavaYazdaniHanikAmbellanetal.2022, author = {Nava-Yazdani, Esfandiar and Hanik, Martin and Ambellan, Felix and von Tycowicz, Christoph}, title = {On Gradient Formulas in an Algorithm for the Logarithm of the Sasaki Metric}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-87174}, year = {2022}, abstract = {The Sasaki metric is the canonical metric on the tangent bundle TM of a Riemannian manifold M. It is highly useful for data analysis in TM (e.g., when one is interested in the statistics of a set of geodesics in M). To this end, computing the Riemannian logarithm is often necessary, and an iterative algorithm was proposed by Muralidharan and Fletcher. In this note, we derive approximation formulas of the energy gradients in their algorithm that we use with success.}, language = {en} } @misc{DresenKlindt2022, author = {Dresen, Christina and Klindt, Marco}, title = {Eine kleine Handreichung zur Digitalisierung von Audio- und Videomaterial}, editor = {digiS - Forschungs- und Kompetenzzentrum Digitalisierung Berlin,}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-86526}, pages = {41}, year = {2022}, abstract = {Die Handreichung soll Mitarbeiter:innen von kulturellen Einrichtungen bei der Digitalisierung von Audio- und Videomaterial unterst{\"u}tzten. Diese Einf{\"u}hrung richtet sich besonders an Personen, die nicht mit dem Thema vertraut sind. Nach einer Einf{\"u}hrung in die Geschichte von Ton- und Bildsignalen werden verschiedene Medientypen vorgestellt und der Umgang mit ihnen um eine Digitalisierung zu beginnen. Die Digitalisierung wird im Zusammenhang mit wichtigen Grundbegriffen und Parametern vorgestellt. Abgeschlossen wird die Handreichung durch Hinweise zur Qualit{\"a}tspr{\"u}fung und Archivierung.}, subject = {Digitalisierung}, language = {de} } @misc{HenningsHoppmannBaumZittel2022, author = {Hennings, Felix and Hoppmann-Baum, Kai and Zittel, Janina}, title = {Optimizing transient gas network control for challenging real-world instances using MIP-based heuristics}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-86842}, year = {2022}, abstract = {Optimizing the transient control of gas networks is a highly challenging task. The corresponding model incorporates the combinatorial complexity of determining the settings for the many active elements as well as the non-linear and non-convex nature of the physical and technical principles of gas transport. In this paper, we present the latest improvements of our ongoing work to solve this problem for real-world, large-scale problem instances: By adjusting our mixed-integer non-linear programming model regarding the gas compression capabilities in the network, we reflect the technical limits of the underlying units more accurately while maintaining a similar overall model size. In addition, we introduce a new algorithmic approach that is based on splitting the complexity of the problem by first finding assignments for discrete variables and then determining the continuous variables as locally optimal solution of the corresponding non-linear program. For the first task, we design multiple different heuristics based on concepts for general time-expanded optimization problems that find solutions by solving a sequence of sub-problems defined on reduced time horizons. To demonstrate the competitiveness of our approach, we test our algorithm on particularly challenging historic demand scenarios. The results show that high-quality solutions are obtained reliably within short solving times, making the algorithm well-suited to be applied at the core of time-critical industrial applications.}, language = {en} } @misc{KostreSunkaraSchuetteetal.2022, author = {Kostr{\´e}, Margarita and Sunkara, Vikram and Sch{\"u}tte, Christof and Djurdjevac Conrad, Nataša}, title = {Understanding the Romanization Spreading on Historical Interregional Networks in Northern Tunisia}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-86764}, year = {2022}, abstract = {Spreading processes are important drivers of change in social systems. To understand the mechanisms of spreading it is fundamental to have information about the underlying contact network and the dynamical parameters of the process. However, in many real-wold examples, this information is not known and needs to be inferred from data. State-of-the-art spreading inference methods have mostly been applied to modern social systems, as they rely on availability of very detailed data. In this paper we study the inference challenges for historical spreading processes, for which only very fragmented information is available. To cope with this problem, we extend existing network models by formulating a model on a mesoscale with temporal spreading rate. Furthermore, we formulate the respective parameter inference problem for the extended model. We apply our approach to the romanization process of Northern Tunisia, a scarce dataset, and study properties of the inferred time-evolving interregional networks. As a result, we show that (1) optimal solutions consist of very different network structures and spreading rate functions; and that (2) these diverse solutions produce very similar spreading patterns. Finally, we discuss how inferred dominant interregional connections are related to available archaeological traces. Historical networks resulting from our approach can help understanding complex processes of cultural change in ancient times.}, language = {en} } @misc{BortolettoLindnerMasing2022, author = {Bortoletto, Enrico and Lindner, Niels and Masing, Berenike}, title = {The Tropical and Zonotopal Geometry of Periodic Timetables}, issn = {1438-0064}, arxiv = {http://arxiv.org/abs/2204.13501}, doi = {https://doi.org/10.1007/s00454-024-00686-2}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-86708}, year = {2022}, abstract = {The Periodic Event Scheduling Problem (PESP) is the standard mathematical tool for optimizing periodic timetabling problems in public transport. A solution to PESP consists of three parts: a periodic timetable, a periodic tension, and integer periodic offset values. While the space of periodic tension has received much attention in the past, we explore geometric properties of the other two components, establishing novel connections between periodic timetabling and discrete geometry. Firstly, we study the space of feasible periodic timetables, and decompose it into polytropes, i.e., polytopes that are convex both classically and in the sense of tropical geometry. We then study this decomposition and use it to outline a new heuristic for PESP, based on the tropical neighbourhood of the polytropes. Secondly, we recognize that the space of fractional cycle offsets is in fact a zonotope. We relate its zonotopal tilings back to the hyperrectangle of fractional periodic tensions and to the tropical neighbourhood of the periodic timetable space. To conclude we also use this new understanding to give tight lower bounds on the minimum width of an integral cycle basis.}, language = {en} } @article{ChenKochZakiyevaetal.2022, author = {Chen, Ying and Koch, Thorsten and Zakiyeva, Nazgul and Liu, Kailiang and Xu, Zhitong and Chen, Chun-houh and Nakano, Junji and Honda, Keisuke}, title = {Article's Scientific Prestige: Measuring the Impact of Individual Articles in the Web of Science}, volume = {17}, number = {1}, doi = {https://doi.org/10.1016/j.joi.2023.101379}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-86380}, pages = {101379}, year = {2022}, abstract = {We performed a citation analysis on the Web of Science publications consisting of more than 63 million articles and 1.45 billion citations on 254 subjects from 1981 to 2020. We proposed the Article's Scientific Prestige (ASP) metric and compared this metric to number of citations (\#Cit) and journal grade in measuring the scientific impact of individual articles in the large-scale hierarchical and multi-disciplined citation network. In contrast to \#Cit, ASP, that is computed based on the eigenvector centrality, considers both direct and indirect citations, and provides steady-state evaluation cross different disciplines. We found that ASP and \#Cit are not aligned for most articles, with a growing mismatch amongst the less cited articles. While both metrics are reliable for evaluating the prestige of articles such as Nobel Prize winning articles, ASP tends to provide more persuasive rankings than \#Cit when the articles are not highly cited. The journal grade, that is eventually determined by a few highly cited articles, is unable to properly reflect the scientific impact of individual articles. The number of references and coauthors are less relevant to scientific impact, but subjects do make a difference.}, language = {en} } @misc{KOBVHrsg2022, author = {KOBV (Hrsg.),}, title = {KOBV-Sondernewsletter zum 25-j{\"a}hrigen Jubil{\"a}um}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-86379}, year = {2022}, abstract = {Der Kooperative Bibliotheksverbund Berlin-Brandenburg wird heute 25 Jahre alt. Seit dem 1. April 1997 entwickelt der KOBV neue Dienstleistungen f{\"u}r Nutzende und Bibliotheken, baut Informationsinfrastrukturen in Berlin und Brandenburg aus, vernetzt Bibliotheken aus der Region und informiert {\"u}ber aktuelle Themen. Im Sondernewsletter geben uns aktuelle und ehemalige KOBV-Mitarbeitende/Mitglieder Antworten auf Fragen zur Entstehung und Weiterentwicklung des Verbundes. Lesen und feiern Sie mit uns zusammen!}, language = {de} } @misc{TurnerKochSerranoetal.2022, author = {Turner, Mark and Koch, Thorsten and Serrano, Felipe and Winkler, Michael}, title = {Adaptive Cut Selection in Mixed-Integer Linear Programming}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-86055}, year = {2022}, abstract = {Cut selection is a subroutine used in all modern mixed-integer linear programming solvers with the goal of selecting a subset of generated cuts that induce optimal solver performance. These solvers have millions of parameter combinations, and so are excellent candidates for parameter tuning. Cut selection scoring rules are usually weighted sums of different measurements, where the weights are parameters. We present a parametric family of mixed-integer linear programs together with infinitely many family-wide valid cuts. Some of these cuts can induce integer optimal solutions directly after being applied, while others fail to do so even if an infinite amount are applied. We show for a specific cut selection rule, that any finite grid search of the parameter space will always miss all parameter values, which select integer optimal inducing cuts in an infinite amount of our problems. We propose a variation on the design of existing graph convolutional neural networks, adapting them to learn cut selection rule parameters. We present a reinforcement learning framework for selecting cuts, and train our design using said framework over MIPLIB 2017. Our framework and design show that adaptive cut selection does substantially improve performance over a diverse set of instances, but that finding a single function describing such a rule is difficult. Code for reproducing all experiments is available at https://github.com/Opt-Mucca/Adaptive-Cutsel-MILP.}, language = {en} } @misc{DittmannHaslerOltmanns2022, author = {Dittmann, Antje and Hasler, Tim and Oltmanns, Elias}, title = {Archivierungsstrategie f{\"u}r audiovisuelles Material}, doi = {10.12752/8591}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85916}, year = {2022}, abstract = {Im Rahmen ihrer Strategie zur Langzeitarchivierung forscht die Deutsche Kinemathek in einer Kooperation mit dem Zuse-Institut Berlin (ZIB) an der digitalen Langzeitarchivierung von AV-Materialien. Ausgangspunkt des Projektes sind die enormen Dateigr{\"o}ßen und die heterogenen Dateiformate, die einem Werk und einer Fassung zugeordnet werden m{\"u}ssen. Die Verwendung von persistenten Identifikatoren stellt den L{\"o}sungsansatz dar.}, language = {de} } @misc{Francobaldi2021, type = {Master Thesis}, author = {Francobaldi, Matteo}, title = {Learning to Use Local Cuts}, year = {2021}, abstract = {We propose a machine learning approach to address a specific algorithmic question that arises during the solving process of a mixed-integer linear programming problem, namely, whether to use cutting planes only at the root node or also at internal nodes of the branch-and-bound search tree, or equivalently, whether to run a cut-and-branch or rather a branch-and-cut algorithm. Within a supervised regression framework, we develop three machine learning models, Linear Model, Random Forest and Neural Network, for predicting the relative performance between the two methods, local-cut and no-local-cut. Hence, through an extensive computational study conducted with FICO Xpress over a large test bed of problems, we evaluate the produced strategies, and we show that they are able to provide, upon the existing policies, a significant improvement to the performance of the solver. In fact, a variant of the random forest suggested in the present work has already been implemented by the development team of Xpress, and released with version 8.13 of the software.}, language = {en} } @misc{RehfeldtKochShinano2022, author = {Rehfeldt, Daniel and Koch, Thorsten and Shinano, Yuji}, title = {Faster exact solution of sparse MaxCut and QUBO problems}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85715}, year = {2022}, language = {en} } @misc{MasingLindnerBorndoerfer2022, author = {Masing, Berenike and Lindner, Niels and Bornd{\"o}rfer, Ralf}, title = {The Price of Symmetric Line Plans in the Parametric City}, issn = {1438-0064}, arxiv = {http://arxiv.org/abs/2201.09756}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85648}, year = {2022}, abstract = {We consider the line planning problem in public transport in the Parametric City, an idealized model that captures typical scenarios by a (small) number of parameters. The Parametric City is rotation symmetric, but optimal line plans are not always symmetric. This raises the question to quantify the symmetry gap between the best symmetric and the overall best solution. For our analysis, we formulate the line planning problem as a mixed integer linear program, that can be solved in polynomial time if the solutions are forced to be symmetric. The symmetry gap is provably small when a specific Parametric City parameter is fixed, and we give an approximation algorithm for line planning in the Parametric City in this case. While the symmetry gap can be arbitrarily large in general, we show that symmetric line plans are a good choice in most practical situations.}, language = {en} } @misc{OPUS4-8560, title = {Annual Report 2020}, volume = {2020}, organization = {Konrad-Zuse-Zentrum f{\"u}r Informationstechnik Berlin}, issn = {0934-5892}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85609}, pages = {90}, year = {2022}, language = {en} } @misc{OPUS4-8559, title = {Annual Report 2019}, volume = {2019}, organization = {Konrad-Zuse-Zentrum f{\"u}r Informationstechnik Berlin}, issn = {0934-5892}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85594}, pages = {98}, year = {2022}, language = {en} } @misc{OPUS4-7497, title = {Annual Report 2018}, volume = {2018}, organization = {Konrad-Zuse-Zentrum f{\"u}r Informationstechnik Berlin}, issn = {0934-5892}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-74971}, pages = {102}, year = {2019}, language = {en} } @misc{BertelmannKochCeynowaetal.2022, author = {Bertelmann, Roland and Koch, Thorsten and Ceynowa, Klaus and S{\"o}llner, Konstanze and Christof, J{\"u}rgen and Rusch, Beate and Sch{\"a}ffler, Hildegard and Putnings, Markus and Pampel, Heinz and Kuberek, Monika and Boltze, Julia and Lohrum, Stefan and Retter, Regina and H{\"o}llerl, Annika and Faensen, Katja and Steffen, Ronald and Gross, Matthias and Hoffmann, Cornelia and Haoua, Marsa}, title = {DeepGreen: Etablierung und Weiterentwicklung rechtssicherer Workflows zur effizienten Umsetzung von Open-Access-Komponenten in Lizenzvereinbarungen f{\"u}r wissenschaftliche Publikationen - Abschlussbericht}, issn = {1438-0064}, doi = {10.12752/8542}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85420}, year = {2022}, abstract = {DeepGreen wurde vom 01.08.2018 bis zum 30.06.2021 in einer zweiten Projektphase von der Deutschen Forschungsgemeinschaft (DFG) gef{\"o}rdert. DeepGreen unterst{\"u}tzt Bibliotheken als Dienstleister f{\"u}r Hochschulen, außeruniversit{\"a}re Forschungseinrichtungen und die dort t{\"a}tigen Wissenschaftler:innen dabei, Publikationen auf Open-Access-Repositorien frei zug{\"a}nglich zu machen und f{\"o}rdert das Zusammenspiel von wissenschaftlichen Einrichtungen und Verlagen. An der zweiten Projektphase waren der Kooperative Bibliotheksverbund Berlin-Brandenburg, die Bayerische Staatsbibliothek, der Bibliotheksverbund Bayern, die Universit{\"a}tsbibliotheken der Friedrich-Alexander-Universit{\"a}t Erlangen-N{\"u}rnberg und der Technischen Universit{\"a}t Berlin und das Helmholtz Open Science Office beteiligt. In dem Projekt wurde erfolgreich eine technische und organisatorische L{\"o}sung zur automatisierten Verteilung von Artikeldaten wissenschaftlicher Verlage an institutionelle und fachliche Repositorien entwickelt. In der zweiten Projektphase lag der Fokus auf der Erprobung der Datendrehscheibe in der Praxis und der Ausweitung auf weitere Datenabnehmer und weitere Verlage. Im Anschluss an die DFG-gef{\"o}rderte Projektlaufzeit ist DeepGreen in einen zweij{\"a}hrigen Pilotbetrieb {\"u}bergegangen. Ziel des Pilotbetriebs ist es, den {\"U}bergang in einen bundesweiten Real-Betrieb vorzubereiten.}, language = {de} } @misc{HenningsPetkovicStreubel2021, author = {Hennings, Felix and Petkovic, Milena and Streubel, Tom}, title = {On the Numerical Treatment of Interlaced Target Values - Modeling, Optimization and Simulation of Regulating Valves in Gas Networks}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85359}, year = {2021}, abstract = {Due to the current and foreseeable shifts in energy production, the trading and transport operations of gas will become more dynamic, volatile, and hence also less predictable. Therefore, computer-aided support in terms of rapid simulation and control optimization will further broaden its importance for gas network dispatching. In this paper, we aim to contribute and openly publish two new mathematical models for regulators, also referred to as control valves, which together with compressors make up the most complex and involved types of active elements in gas network infrastructures. They provide full direct control over gas networks but are in turn controlled via target values, also known as set-point values, themselves. Our models incorporate up to six dynamical target values to define desired transient states for the elements' local vicinity within the network. That is, each pair of every two target values defines a bounding box for the inlet pressure, outlet pressure as well as the passing mass flow of gas. In the proposed models, those target values are prioritized differently and are constantly in competition with each other, which can only be resolved dynamically at run-time of either a simulation or optimization process. Besides careful derivation, we compare simulation and optimization results with predictions of the commercial simulation tool SIMONE.}, language = {en} } @misc{BestuzhevaBesanconChenetal.2021, author = {Bestuzheva, Ksenia and Besan{\c{c}}on, Mathieu and Chen, Wei-Kun and Chmiela, Antonia and Donkiewicz, Tim and van Doornmalen, Jasper and Eifler, Leon and Gaul, Oliver and Gamrath, Gerald and Gleixner, Ambros and Gottwald, Leona and Graczyk, Christoph and Halbig, Katrin and Hoen, Alexander and Hojny, Christopher and van der Hulst, Rolf and Koch, Thorsten and L{\"u}bbecke, Marco and Maher, Stephen J. and Matter, Frederic and M{\"u}hmer, Erik and M{\"u}ller, Benjamin and Pfetsch, Marc E. and Rehfeldt, Daniel and Schlein, Steffan and Schl{\"o}sser, Franziska and Serrano, Felipe and Shinano, Yuji and Sofranac, Boro and Turner, Mark and Vigerske, Stefan and Wegscheider, Fabian and Wellner, Philipp and Weninger, Dieter and Witzig, Jakob}, title = {The SCIP Optimization Suite 8.0}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85309}, year = {2021}, abstract = {The SCIP Optimization Suite provides a collection of software packages for mathematical optimization centered around the constraint integer programming framework SCIP. This paper discusses enhancements and extensions contained in version 8.0 of the SCIP Optimization Suite. Major updates in SCIP include improvements in symmetry handling and decomposition algorithms, new cutting planes, a new plugin type for cut selection, and a complete rework of the way nonlinear constraints are handled. Additionally, SCIP 8.0 now supports interfaces for Julia as well as Matlab. Further, UG now includes a unified framework to parallelize all solvers, a utility to analyze computational experiments has been added to GCG, dual solutions can be postsolved by PaPILO, new heuristics and presolving methods were added to SCIP-SDP, and additional problem classes and major performance improvements are available in SCIP-Jack.}, language = {en} } @misc{Shinano2021, author = {Shinano, Yuji}, title = {UG - Ubiquity Generator Framework v1.0.0beta}, doi = {10.12752/8521}, year = {2021}, abstract = {UG is a generic framework to parallelize branch-and-bound based solvers (e.g., MIP, MINLP, ExactIP) in a distributed or shared memory computing environment. It exploits the powerful performance of state-of-the-art "base solvers", such as SCIP, CPLEX, etc. without the need for base solver parallelization. UG framework, ParaSCIP(ug[SCIP,MPI]) and FiberSCIP (ug[SCIP,Pthreads]) are available as a beta version. v1.0.0: new documentation and cmake, generalization of ug framework, implementation of selfsplitrampup for fiber- and parascip, better memory and time limit handling.}, language = {en} } @misc{RiberaBorrellQuerRichteretal.2021, author = {Ribera Borrell, Enric and Quer, Jannes and Richter, Lorenz and Sch{\"u}tte, Christof}, title = {Improving control based importance sampling strategies for metastable diffusions via adapted metadynamics}, issn = {1438-0064}, year = {2021}, abstract = {Sampling rare events in metastable dynamical systems is often a computationally expensive task and one needs to resort to enhanced sampling methods such as importance sampling. Since we can formulate the problem of finding optimal importance sampling controls as a stochastic optimization problem, this then brings additional numerical challenges and the convergence of corresponding algorithms might as well suffer from metastabilty. In this article we address this issue by combining systematic control approaches with the heuristic adaptive metadynamics method. Crucially, we approximate the importance sampling control by a neural network, which makes the algorithm in principle feasible for high dimensional applications. We can numerically demonstrate in relevant metastable problems that our algorithm is more effective than previous attempts and that only the combination of the two approaches leads to a satisfying convergence and therefore to an efficient sampling in certain metastable settings.}, language = {en} } @misc{NavaYazdaniHegevonTycowicz2021, author = {Nava-Yazdani, Esfandiar and Hege, Hans-Christian and von Tycowicz, Christoph}, title = {A Hierarchical Geodesic Model for Longitudinal Analysis on Manifolds}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-85187}, year = {2021}, abstract = {In many applications, geodesic hierarchical models are adequate for the study of temporal observations. We employ such a model derived for manifold-valued data to Kendall's shape space. In particular, instead of the Sasaki metric, we adapt a functional-based metric, which increases the computational efficiency and does not require the implementation of the curvature tensor. We propose the corresponding variational time discretization of geodesics and employ the approach for longitudinal analysis of 2D rat skulls shapes as well as 3D shapes derived from an imaging study on osteoarthritis. Particularly, we perform hypothesis test and estimate the mean trends.}, language = {en} } @misc{Shinano2020, author = {Shinano, Yuji}, title = {UG - Ubiquity Generator Framework v0.9.1}, doi = {10.12752/8508}, year = {2020}, abstract = {UG is a generic framework to parallelize branch-and-bound based solvers (e.g., MIP, MINLP, ExactIP) in a distributed or shared memory computing environment. It exploits the powerful performance of state-of-the-art "base solvers", such as SCIP, CPLEX, etc. without the need for base solver parallelization. UG framework, ParaSCIP(ug[SCIP,MPI]) and FiberSCIP (ug[SCIP,Pthreads]) are available as a beta version. For MIP solving, ParaSCIP and FiberSCIP are well debugged and should be stable. For MINLP solving, they are relatively stable, but not as thoroughly debugged. This release version should handle branch-and-cut approaches where subproblems are defined by variable bounds and also by constrains for ug[SCIP,*] ParaSCIP and FiberSCIP). Therefore, problem classes other than MIP or MINLP can be handled, but they have not been tested yet. v0.9.1: Update orbitope cip files.}, language = {en} } @misc{Klimpel2021, author = {Klimpel, Paul}, title = {Urheberrechtsreform 2021. Neue Chancen f{\"u}r das kulturelle Erbe}, editor = {Lehnert, Katrin and M{\"u}ller, Anja}, edition = {1. Auflage}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-84315}, year = {2021}, abstract = {Im Juni 2021 fand die j{\"u}ngste Urheberrechtsreform statt. Sie bietet neue Chancen f{\"u}r das kulturelle Erbe, sei es in den Archiven und Bibliotheken sozialer Bewegungen, kleinen und großen Museen oder staatlichen Archiven und Bibliotheken. Denn die Novelle beinhaltet neue gesetzliche Erlaubnisse, die insbesondere die Online-Stellung von Archivmaterialien ("nicht verf{\"u}gbare Werke") und den Schutz der Gemeinfreiheit betreffen. Das vorliegende Bulletin geht komprimiert auf diese Neuerungen ein und erkl{\"a}rt, was sich in Zukunft {\"a}ndern wird. Darauf aufbauend wird Mitte 2022 eine ausf{\"u}hrliche und aktualisierte Publikation zur Rechtekl{\"a}rung erscheinen. Diese Vorver{\"o}ffentlichung soll erste dr{\"a}ngende Fragen kl{\"a}ren. Herausgeber:innen sind das Digitale Deutsche Frauenarchiv (DDF) und das Forschungs- und Kompetenzzentrum Digitalisierung Berlin (digiS), die bereits unabh{\"a}ngig voneinander Handreichungen zu rechtlichen Aspekten der Digitalisierung ver{\"o}ffentlichten.}, subject = {4062127-3}, language = {de} } @misc{MokhtariPattersonHoefling2021, author = {Mokhtari, Zahra and Patterson, Robert I. A. and H{\"o}fling, Felix}, title = {Spontaneous trail formation in populations of auto-chemotactic walkers}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-84466}, year = {2021}, abstract = {We study the formation of trails in populations of self-propelled agents that make oriented deposits of pheromones and also sense such deposits to which they then respond with gradual changes of their direction of motion. Based on extensive off-lattice computer simulations aiming at the scale of insects, e.g., ants, we identify a number of emerging stationary patterns and obtain qualitatively the non-equilibrium \add{state} diagram of the model, spanned by the strength of the agent--pheromone interaction and the number density of the population. In particular, we demonstrate the spontaneous formation of persistent, macroscopic trails, and highlight some behaviour that is consistent with a dynamic phase transition. This includes a characterisation of the mass of system-spanning trails as a potential order parameter. We also propose a dynamic model for a few macroscopic observables, including the sub-population size of trail-following agents, which captures the early phase of trail formation.}, language = {en} } @misc{EiflerGleixnerPulaj2021, author = {Eifler, Leon and Gleixner, Ambros and Pulaj, Jonad}, title = {A Safe Computational Framework for Integer Programming applied to Chv{\´a}tal's Conjecture}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-84444}, year = {2021}, abstract = {We describe a general and safe computational framework that provides integer programming results with the degree of certainty that is required for machine-assisted proofs of mathematical theorems. At its core, the framework relies on a rational branch-and-bound certificate produced by an exact integer programming solver, SCIP, in order to circumvent floating-point roundoff errors present in most state-of-the-art solvers for mixed-integer programs. The resulting certificates are self-contained and checker software exists that can verify their correctness independently of the integer programming solver used to produce the certificate. This acts as a safeguard against programming errors that may be present in complex solver software. The viability of this approach is tested by applying it to finite cases of Chv{\´a}tal's conjecture, a long-standing open question in extremal combinatorics. We take particular care to verify also the correctness of the input for this specific problem, using the Coq formal proof assistant. As a result we are able to provide a first machine-assisted proof that Chv{\´a}tal's conjecture holds for all downsets whose union of sets contains seven elements or less.}, language = {en} } @misc{BorndoerferSchwartzSurau2021, author = {Bornd{\"o}rfer, Ralf and Schwartz, Stephan and Surau, William}, title = {Rooted Maximum Weight Connected Subgraphs with Balancing and Capacity Constraints}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-84427}, year = {2021}, language = {en} } @misc{TackShestakovLuedkeetal.2021, author = {Tack, Alexander and Shestakov, Alexey and L{\"u}dke, David and Zachow, Stefan}, title = {A deep multi-task learning method for detection of meniscal tears in MRI data from the Osteoarthritis Initiative database}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-84415}, year = {2021}, abstract = {We present a novel and computationally efficient method for the detection of meniscal tears in Magnetic Resonance Imaging (MRI) data. Our method is based on a Convolutional Neural Network (CNN) that operates on a complete 3D MRI scan. Our approach detects the presence of meniscal tears in three anatomical sub-regions (anterior horn, meniscal body, posterior horn) for both the Medial Meniscus (MM) and the Lateral Meniscus (LM) individually. For optimal performance of our method, we investigate how to preprocess the MRI data or how to train the CNN such that only relevant information within a Region of Interest (RoI) of the data volume is taken into account for meniscal tear detection. We propose meniscal tear detection combined with a bounding box regressor in a multi-task deep learning framework to let the CNN implicitly consider the corresponding RoIs of the menisci. We evaluate the accuracy of our CNN-based meniscal tear detection approach on 2,399 Double Echo Steady-State (DESS) MRI scans from the Osteoarthritis Initiative database. In addition, to show that our method is capable of generalizing to other MRI sequences, we also adapt our model to Intermediate-Weighted Turbo Spin-Echo (IW TSE) MRI scans. To judge the quality of our approaches, Receiver Operating Characteristic (ROC) curves and Area Under the Curve (AUC) values are evaluated for both MRI sequences. For the detection of tears in DESS MRI, our method reaches AUC values of 0.94, 0.93, 0.93 (anterior horn, body, posterior horn) in MM and 0.96, 0.94, 0.91 in LM. For the detection of tears in IW TSE MRI data, our method yields AUC values of 0.84, 0.88, 0.86 in MM and 0.95, 0.91, 0.90 in LM. In conclusion, the presented method achieves high accuracy for detecting meniscal tears in both DESS and IW TSE MRI data. Furthermore, our method can be easily trained and applied to other MRI sequences.}, language = {en} } @misc{Mexi2021, type = {Master Thesis}, author = {Mexi, Gioni}, title = {New Ideas for the Feasibility Pump: Using Multiple Reference Vectors}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-83724}, year = {2021}, language = {en} } @misc{EulerBorndoerferStrunketal.2021, author = {Euler, Ricardo and Bornd{\"o}rfer, Ralf and Strunk, Timo and Takkula, Tuomo}, title = {ULD Build-Up Scheduling with Dynamic Batching in an Air Freight Hub}, issn = {1438-0064}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-83482}, year = {2021}, abstract = {Air freight is usually shipped in standardized unit load devices (ULDs). The planning process for the consolidation of transit cargo from inbound flights or locally emerging shipments into ULDs for outbound flights is called build-up scheduling. More specifically, outbound ULDs must be assigned a time and a workstation subject to both workstation capacity constraints and the availability of shipments which in turn depends on break-down decisions for incoming ULDs. ULDs scheduled for the same outbound flight should be built up in temporal and spatial proximity. This serves both to minimize overhead in transportation times and to allow workers to move freight between ULDs. We propose to address this requirement by processing ULDs for the same outbound flight in batches. For the above build-up scheduling problem, we introduce a multi-commodity network design model. Outbound flights are modeled as commodities; transit cargo is represented by cargo flow volume and unpack and batch decisions are represented as design variables. The model is solved with standard MIP solvers on a set of benchmark data. For instances with a limited number of resource conflicts, near-optimal solutions are found in under two hours for a whole week of operations.}, language = {en} } @misc{HosodaMaherShinanoetal.2021, author = {Hosoda, Junko and Maher, Stephen J. and Shinano, Yuji and Villumsen, Jonas Christoffer}, title = {Location, transshipment and routing: An adaptive transportation network integrating long-haul and local vehicle routing}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-83438}, year = {2021}, abstract = {The routing of commodities is a tactical problem in supply chain management that aims to synchronise transportation services connecting a network of warehouses and consolidation locations. This paper considers the routing of commodities in a transportation network that is flexible in response to demand through changes to regional warehouse clustering and the designation of consolidation locations. Traditionally, warehouse clustering and consolidation locations are determined as part of strategic planning that is performed months to years in advance of operations---limiting the flexibility in transportation networks to respond to changes in demand. A mathematical programming-based algorithmic framework is proposed to integrate the strategic decisions of location planning with tactical decisions of vehicle routing and synchronisation. A multi-armed bandit problem is developed to explore warehouse clustering decisions and exploit those that lead to small transportation costs. An extensive computational study will show that the proposed algorithmic framework effectively integrates strategic and tactical planning decisions to reduce the overall transportation costs.}, language = {en} } @misc{LindnervanLieshout2021, author = {Lindner, Niels and van Lieshout, Rolf}, title = {Benders Decomposition for the Periodic Event Scheduling Problem}, issn = {1438-0064}, doi = {10.1007/978-3-031-08623-6_43}, url = {http://nbn-resolving.de/urn:nbn:de:0297-zib-83338}, year = {2021}, abstract = {The Periodic Event Scheduling Problem (PESP) is the central mathematical model behind the optimization of periodic timetables in public transport. We apply Benders decomposition to the incidence-based MIP formulation of PESP. The resulting formulation exhibits particularly nice features: The subproblem is a minimum cost network flow problem, and feasibility cuts are equivalent to the well-known cycle inequalities by Odijk. We integrate the Benders approach into a branch-and-cut framework, and assess the performance of this method on instances derived from the benchmarking library PESPlib.}, language = {en} } @article{BorndoerferDaneckerWeiser2023, author = {Bornd{\"o}rfer, Ralf and Danecker, Fabian and Weiser, Martin}, title = {Error Bounds for Discrete-Continuous Free Flight Trajectory Optimization}, volume = {198}, journal = {Journal of Optimization Theory and Applications}, doi = {10.1007/s10957-023-02264-7}, pages = {830 -- 856}, year = {2023}, abstract = {Flight planning, the computation of optimal routes in view of flight time and fuel consumption under given weather conditions, is traditionally done by finding globally shortest paths in a predefined airway network. Free flight trajectories, not restricted to a network, have the potential to reduce the costs significantly, and can be computed using locally convergent continuous optimal control methods. Hybrid methods that start with a discrete global search and refine with a fast continuous local optimization combine the best properties of both approaches, but rely on a good switchover, which requires error estimates for discrete paths relative to continuous trajectories. Based on vertex density and local complete connectivity, we derive localized and a priori bounds for the flight time of discrete paths relative to the optimal continuous trajectory, and illustrate their properties on a set of benchmark problems. It turns out that localization improves the error bound by four orders of magnitude, but still leaves ample opportunities for tighter bounds using a posteriori error estimators.}, language = {en} }