@article{JanowskiGrossSauerGuerthetal.2016, author = {Janowski, Susann and Gross, Ina and Sauer-G{\"u}rth, Hedwig and Tietze, Dieter Thomas and Grohme, Markus and Frohme, Marcus and Becker, Peter and Wink, Michael}, title = {New Microsatellite Markers for the Common Tern (Sterna hirundo) Developed with 454 Shot-Gun Pyrosequencing}, series = {The Open Ornithology Journal}, volume = {9}, journal = {The Open Ornithology Journal}, issn = {1874-4532}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-6789}, pages = {50 -- 59}, year = {2016}, abstract = {Long term studies, focusing on population- and socio-biology research, require the unequivocal identification of individuals. DNA studies with Short Tandem Repeats (STR loci) became a widespread tool in population genetics. We used the next-generation sequencing (NGS) approach with 454 shot-gun pyrosequencing to identify 13 new polymorphic STR loci for the Common Tern, Sterna hirundo. To enlarge the marker set we added two more loci originally developed for Black-legged Kittiwake (Rissa tridactyla) and Red-billed Gull (Chroicocephalus scopulinus) and arranged these 15 loci into three multiplex PCR panels for high throughput genotyping. Loci characterization demonstrated that our marker set is of high quality. A PIC value of about 0.67 and a power of exclusion value of 0.99 were reached. Deviation from Hardy-Weinberg expectations of some loci and low frequencies for null alleles are interpreted as a result of inbreeding and founder effect in the investigated tern colony. We used a test data set of this well-studied breeding colony of Common Tern at Banter Lake, Wilhelmshaven, Germany, to perform a parentage test. Parent-chick relationships, known from the social pedigree of that colony, were compared with genetically calculated ones. In order to test our markers and the used parentage program COLONY, we conducted six competing data sets with varying completeness of included parental genotypes. By including fully sampled parent pairs of known family assignment, results were correct for nest mates, single parents and parent pairs. Our marker set provides a powerful tool to investigate life-time reproductive success and other issues of population and socio-biology for Common Terns, e.g. in the aforementioned colony monitored for decades.}, language = {en} } @article{LiAmirkhanyanGrebinyketal.2025, author = {Li, Xiangkun and Amirkhanyan, Zohrab and Grebinyk, Anna and Gross, Matthias and Komar, Yuliia and Riemer, Felix and Asoyan, Aida and Boonpornprasert, Prach and Borchert, Paul and Davtyan, Hakob and Dmytriiev, Dmytro and Frohme, Marcus and Hoffmann, Andreas and Krasilnikov, Mikhail and Loisch, Gregor and Lotfi, Zahra and M{\"u}ller, Frieder and Schmitz, Michael and Obier, Frank and Oppelt, Anne and Philipp, Sebastian and Richard, Christopher and Vashchenko, Grygorii and Villani, Daniel and Worm, Steven and Stephan, Frank}, title = {Demonstration of ultra-high dose rate electron irradiation at FLASHlab@PITZ}, series = {Physics in Medicine \& Biology}, volume = {70}, journal = {Physics in Medicine \& Biology}, number = {5}, publisher = {Institute of Physics Publishing (IOP)}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-20092}, year = {2025}, abstract = {Objective. The photo injector test facility at DESY in Zeuthen (PITZ) is building up an R\&D platform, known as FLASHlab@PITZ, for systematically studying the FLASH effect in cancer treatment with its high-brightness electron beams, which can provide a uniquely large dose parameter range for radiation experiments. In this paper, we demonstrate the capabilities by experiments with a reduced parameter range on a startup beamline and study the potential performance of the full beamline by simulations. Approach. To measure the dose, Gafchromic films are installed both in front of and after the samples; Monte Carlo simulations are conducted to predict the dose distribution during beam preparation and help understand the dose distribution inside the sample. Plasmid DNA is irradiated under various doses at conventional and ultra-high dose rate (UHDR) to study the DNA damage by radiations. Start-to-end simulations are performed to verify the performance of the full beamline. Main results. On the startup beamline, reproducible irradiation has been established with optimized electron beams and the delivered dose distributions have been measured with Gafchromic films and compared to FLUKA simulations. The functionality of this setup has been further demonstrated in biochemical experiments at conventional dose rate of 0.05 Gy s-1 and UHDR of several 105 Gy s-1 and a varying dose up to 60 Gy, with the UHDR experiments finished within a single RF pulse (less than 1 millisecond); the observed conformation yields of the irradiated plasmid DNA revealed its dose-dependent radiation damage. The upgrade to the full FLASHlab@PITZ beamline is justified by simulations with homogeneous radiation fields generated by both pencil beam scanning and scattering beams. Significance. With the demonstration of UHDR irradiation and the simulated performance of the new beamline, FLASHlab@PITZ will serve as a powerful platform for studying the FLASH effects in cancer treatment.}, language = {en} }