@misc{WeinertWohlfahrtSchmidetal.2010, author = {Weinert, Stefan and Wohlfahrt, Ingolf and Schmid, Andrea and Frohme, Marcus}, title = {Einf{\"u}hrung eines Qualit{\"a}tsmanagement-Systems in einem molekularbiologischen Labor einer Hochschule}, series = {Wissenschaftliche Beitr{\"a}ge 2009/2010}, volume = {14}, journal = {Wissenschaftliche Beitr{\"a}ge 2009/2010}, issn = {0949-8214}, doi = {10.15771/0949-8214_2010_1_6}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus-859}, pages = {49 -- 56}, year = {2010}, abstract = {Zertifizierte Qualit{\"a}tsmanagementsysteme (QM-Systeme) sind in akademischen Forschungslaboren bisher kaum vertreten. Hier ist vor allem die Bedeutung eines zertifizierten Labors vor dem Hintergrund der Ver{\"o}ffentlichung wissenschaftlicher Publikationen scheinbar bedeutungslos. Im industriellen Bereich hingegen sind QM-Systeme weitaus h{\"a}ufiger eingef{\"u}hrt. Labore im akademischen Bereich stehen jedoch grunds{\"a}tzlich in der Verantwortung, schonend mit den Ressourcen des Staates umzugehen, und haben dar{\"u}ber hinaus das Bestreben, Forschungs-/Industrieauftr{\"a}ge einzuwerben. Mit dieser Publikation wird gezeigt, wie durch die Einrichtung eines QM-Systems und der Einhaltung der normativen Vorgabe ein verbesserter schonender Umgang mit staatlichen Ressourcen m{\"o}glich ist, die Ergebnissicherheit erh{\"o}ht, Betriebsabl{\"a}ufe optimiert, die Chancen f{\"u}r Studenten auf dem Arbeitsmarkt verbessert werden und mehr Forschungs-/Industrieauftr{\"a}ge akquiriert werden k{\"o}nnen. Es wird dargestellt, wie ein QM-System in einem Labor eingerichtet werden kann. Dabei wird erl{\"a}utert, welche QM-Regelwerke f{\"u}r ein Labor im Hochschulbereich in Betracht kommen. Zudem wird eine Methodik in Form eines Projektplans vorgestellt, mit dem die Anforderungen der Norm strukturiert umgesetzt werden k{\"o}nnen. Das QM-System wurde im Labor f{\"u}r Molekularbiologie und Funktionelle Genomik an der Technischen Hochschule Wildau [FH] eingef{\"u}hrt und im Rahmen der Zertifizierung der Hochschule in das Audit einbezogen.}, language = {de} } @article{FischbachLohBieretal.2017, author = {Fischbach, Jens and Loh, Qiuting and Bier, Frank Fabian and Lim, Theam Soon and Frohme, Marcus and Gl{\"o}kler, J{\"o}rn}, title = {Alizarin Red S for Online Pyrophosphate Detection Identified by a Rapid Screening Method}, series = {Scientific Reports}, volume = {7}, journal = {Scientific Reports}, issn = {2045-2322}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-9248}, year = {2017}, abstract = {We identified Alizarin Red S and other well known fluorescent dyes useful for the online detection of pyrophosphate in enzymatic assays, including the loop mediated isothermal amplification (LAMP) and polymerase chain reaction (PCR) assays. An iterative screening was used for a selected set of compounds to first secure enzyme compatibility, evaluate inorganic pyrophosphate sensitivity in the presence of manganese as quencher and optimize conditions for an online detection. Of the selected dyes, the inexpensive alizarin red S was found to selectively detect pyrophosphate under LAMP and PCR conditions and is superior with respect to its defined red-shifted spectrum, long shelf life and low toxicity. In addition, the newly identified properties may also be useful in other enzymatic assays which do not generate nucleic acids but are based on inorganic pyrophosphate. Finally, we propose that our screening method may provide a blueprint for rapid screening of compounds for detecting inorganic pyrophosphate.}, language = {en} } @article{GrebinykYashchukBashmakovaetal.2019, author = {Grebinyk, Anna and Yashchuk, Valeriy and Bashmakova, Nataliya and Gryn, Dmytro and Hagemann, Tobias and Naumenko, Antonina and Kutsevol, Nataliya and Dandekar, Thomas and Frohme, Marcus}, title = {A New Triple System DNA-Nanosilver-Berberine for Cancer Therapy}, series = {Applied Nanoscience}, journal = {Applied Nanoscience}, issn = {2190-5517}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-10628}, year = {2019}, abstract = {The isoquinoline quaternary alkaloid Berberine possesses a variety of pharmacological properties that suggests its promising application for an anticancer delivery system design utilizing its ability to intercalate DNA.In the current work we have investigated the effects of Berberine on the human T-cell leukemia cell line in vitro.Fluorescent microscopy of leukemic cells revealed Berberine nuclear localization. The results showed that Berberine inhibited leukemic cell growth in a time-and dose-dependent manner, that was associated with reactive oxygen species production intensification and caspase 3/7 activity increase with followed apoptosis induction.Berberine was used as a toxic and phototoxic agent for triple system synthesis along with DNA as a carrier and nanosilver as a plasmonic accelerator of Berberine electronic transitions and high energy emission absorbent centers.The proposed method allows to obtain the complex of DNA with Berberine molecules and silver nanopoarticles. The optical properties of free components as well as their various combinations, including the final triple system DNA-Nanosilver-Berberine, were investigated. Obtained results support the possibility to use the triple system DNA-Nanosilver-Berberine as an alternative therapeutic agent for cancer treatment.}, language = {en} } @article{HerkenhoffBroedelFrohme2024, author = {Herkenhoff, Marcos Edgar and Br{\"o}del, Oliver and Frohme, Marcus}, title = {Hops across Continents: Exploring How Terroir Transforms the Aromatic Profiles of Five Hop (Humulus lupulus) Varieties Grown in Their Countries of Origin and in Brazil}, series = {Plants}, volume = {13}, journal = {Plants}, number = {19}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-19470}, year = {2024}, abstract = {Humulus lupulus, or hops, is a vital ingredient in brewing, contributing bitterness, flavor, and aroma. The female plants produce strobiles rich in essential oils and acids, along with bioactive compounds like polyphenols, humulene, and myrcene, which offer health benefits. This study examined the aromatic profiles of five hop varieties grown in Brazil versus their countries of origin. Fifty grams of pelletized hops from each strain were collected and analyzed using HS-SPME/GC-MS to identify volatile compounds, followed by statistical analysis with PLS-DA and ANOVA. The study identified 330 volatile compounds and found significant aromatic differences among hops from different regions. For instance, H. Mittelfr{\"u}her grown in Brazil has a fruity and herbaceous profile, while the German-grown variety is more herbal and spicy. Similar variations were noted in the Magnum, Nugget, Saaz, and Sorachi Ace varieties. The findings underscore the impact of terroir on hop aromatic profiles, with Brazilian-grown hops displaying distinct profiles compared to their counterparts from their countries of origin, including variations in aromatic notes and α-acid content.}, language = {en} } @article{HerkenhoffBroedelDilarrietal.2026, author = {Herkenhoff, Marcos Edgar and Br{\"o}del, Oliver and Dilarri, Guilherme and Bajay, Miklos Maximiliano and Frohme, Marcus and Costamilan, Carlos Andr{\´e} da Veiga Lima Rosa}, title = {Characterization of Volatile Compounds in Amarillo, Ariana, Cascade, Centennial, and El Dorado Hops Using HS-SPME/GC-MS}, series = {Compounds}, volume = {6}, journal = {Compounds}, number = {1}, publisher = {MDPI}, issn = {2673-6918}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-21029}, year = {2026}, abstract = {Humulus lupulus L. (hops) is essential in brewing due to its contributions to bitterness, flavor, and aroma. This study compared the volatile profiles of five commercially important hop varieties—Amarillo, Ariana, Cascade, Centennial, and El Dorado—grown in their main regions of origin (United States for Amarillo, Cascade, and El Dorado; Germany for Ariana; and Brazil for Centennial). Headspace solid-phase microextraction coupled with gas chromatography-mass spectrometry (HS-SPME/GC-MS) enabled the identification of 312 volatile compounds, including monoterpenes (e.g., myrcene, linalool, geraniol), sesquiterpenes (e.g., humulene, caryophyllene), esters, alcohols, aldehydes, and ketones. Amarillo showed the highest myrcene content (22.61\% of the total volatile area), while Centennial was distinguished by elevated γ-muurolene (20.59\%), and El Dorado by the highest level of undecan-2-one (10.47\%), highlighting marked varietal differences in key aroma-active constituents. Multivariate, including principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA), clearly discriminated the five varieties: PC1 (41.04\% of the variance) separated samples enriched in fruity/floral monoterpenes and esters from those dominated by woody/resinous sesquiterpenes, whereas PC2 (25.93\% of the variance) reflected variation in medium-chain esters, ketones, and waxy compounds. These chemometric patterns demonstrate that both genetic background and growing region terroir strongly shape hop volatile composition and, consequently, aroma potential, providing brewers with objective criteria for selecting hop varieties to achieve specific sensory profiles in beer.}, language = {en} } @article{LiAmirkhanyanGrebinyketal.2025, author = {Li, Xiangkun and Amirkhanyan, Zohrab and Grebinyk, Anna and Gross, Matthias and Komar, Yuliia and Riemer, Felix and Asoyan, Aida and Boonpornprasert, Prach and Borchert, Paul and Davtyan, Hakob and Dmytriiev, Dmytro and Frohme, Marcus and Hoffmann, Andreas and Krasilnikov, Mikhail and Loisch, Gregor and Lotfi, Zahra and M{\"u}ller, Frieder and Schmitz, Michael and Obier, Frank and Oppelt, Anne and Philipp, Sebastian and Richard, Christopher and Vashchenko, Grygorii and Villani, Daniel and Worm, Steven and Stephan, Frank}, title = {Demonstration of ultra-high dose rate electron irradiation at FLASHlab@PITZ}, series = {Physics in Medicine \& Biology}, volume = {70}, journal = {Physics in Medicine \& Biology}, number = {5}, publisher = {Institute of Physics Publishing (IOP)}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-20092}, year = {2025}, abstract = {Objective. The photo injector test facility at DESY in Zeuthen (PITZ) is building up an R\&D platform, known as FLASHlab@PITZ, for systematically studying the FLASH effect in cancer treatment with its high-brightness electron beams, which can provide a uniquely large dose parameter range for radiation experiments. In this paper, we demonstrate the capabilities by experiments with a reduced parameter range on a startup beamline and study the potential performance of the full beamline by simulations. Approach. To measure the dose, Gafchromic films are installed both in front of and after the samples; Monte Carlo simulations are conducted to predict the dose distribution during beam preparation and help understand the dose distribution inside the sample. Plasmid DNA is irradiated under various doses at conventional and ultra-high dose rate (UHDR) to study the DNA damage by radiations. Start-to-end simulations are performed to verify the performance of the full beamline. Main results. On the startup beamline, reproducible irradiation has been established with optimized electron beams and the delivered dose distributions have been measured with Gafchromic films and compared to FLUKA simulations. The functionality of this setup has been further demonstrated in biochemical experiments at conventional dose rate of 0.05 Gy s-1 and UHDR of several 105 Gy s-1 and a varying dose up to 60 Gy, with the UHDR experiments finished within a single RF pulse (less than 1 millisecond); the observed conformation yields of the irradiated plasmid DNA revealed its dose-dependent radiation damage. The upgrade to the full FLASHlab@PITZ beamline is justified by simulations with homogeneous radiation fields generated by both pencil beam scanning and scattering beams. Significance. With the demonstration of UHDR irradiation and the simulated performance of the new beamline, FLASHlab@PITZ will serve as a powerful platform for studying the FLASH effects in cancer treatment.}, language = {en} } @inproceedings{LiAmirkhanyanAftabetal.2024, author = {Li, Xiangkun and Amirkhanyan, Zohrab and Aftab, Namra and Boonpornprasert, Prach and Dmytriiev, Dmytro and Frohme, Marcus and Georgiev, Georgi and Grebinyk, Anna and Gross, Matthias and Hoffmann, Andreas and Komar, Yuliia and Krasilnikov, Mikhail and Loisch, Gregor and Oppelt, Anne and Richard, Christopher and Riemer, F. and Philipp, Sebastian and Schmitz, Michael and M{\"u}ller, Frieder and Obier, Frank and Vashchenko, Grygorii and Worm, Steven and Stephan, Frank}, title = {Overview of FLASHlab@PITZ: the new R\&D platform for FLASH radiation therapy and radiation biology}, series = {Journal of Physics: Conference Series, Volume 2687, Applications of Accelerators, Technology Transfer and Industrial Relations and Outreach}, volume = {2687}, booktitle = {Journal of Physics: Conference Series, Volume 2687, Applications of Accelerators, Technology Transfer and Industrial Relations and Outreach}, publisher = {Institute of Physics Publishing (IOP)}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-18474}, year = {2024}, abstract = {An R\&D platform for electron FLASH radiation therapy and radiation biology is being prepared at the Photo Injector Test facility at DESY in Zeuthen (FLASHlab@PITZ). This platform is based on the unique beam parameters available at PITZ: ps scale electron bunches of up to 22 MeV with up to 5 nC bunch charge at MHz bunch repetition rate in bunch trains of up to 1 ms in length repeating at 1 to 10 Hz. It works together with the Technical University of Applied Sciences Wildau (TH Wildau) as partner in close vicinity for the biological resources. A startup beamline has been installed to allow dosimetry studies and irradiation experiments on chemical, biochemical and biological samples after a 60-degree dispersive arm. The measured dose and dose rates under different beam conditions and first experimental results will be reported in this paper. In addition, a dedicated beamline for FLASHlab@PITZhas been designed for better control of the high brightness electron beams. This includes a dogleg to translate the beam and a 2D kicker system to scan the tiny beam focused by quadrupoles across the samples within less than 1 ms. Simulation studies will be presented to demonstrate the extremely flexible dose parameters with various irradiation options for electron FLASH radiation therapy and radiation biology studies.}, language = {en} } @inproceedings{ChepurnaGrebinykPetrushkoetal.2019, author = {Chepurna, Oksana and Grebinyk, Anna and Petrushko, Yulia and Prylutska, Svitlana and Grebinyk, Sergii and Yashchuk, Valeriy and Matyshevska, Olga and Ritter, Uwe and Dandekar, Thomas and Frohme, Marcus and Qu, Junle and Ohulchanskyy, Tymish Y.}, title = {LED-based portable light source for photodynamic therapy}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-14778}, year = {2019}, abstract = {Photodynamic therapy (PDT) employs light activation of tissue-localized photosensitizer in an oxygen-dependent process which initiates oxidative stress, inflammation, and cell death. Laser systems, which are mostly used in PDT as light sources can be costly and oversized. light-emitting diodes (LEDs) equipment has a high potential to simplify technical part of phototriggered therapies and to reduce its costs. We develop the LED-based system that includes the control and irradiation units. The system provides the same power density at any irradiation point. Among the advantages of the device is a possibility to change the irradiation area and tune the irradiation dose. PDT experiments with cancer cells in vitro treated with two different photosensitizers demonstrated a possibility to use the developed LED-based system as a low-cost light source in PDT.}, language = {en} } @article{GrebinykPrylutskaBuchelnikovetal.2019, author = {Grebinyk, Anna and Prylutska, Svitlana and Buchelnikov, Anatoliy and Tverdokhleb, Nina and Grebinyk, Sergii and Evstigneev, Maxim and Matyshevska, Olga and Cherepanov, Vsevolod and Prylutskyy, Yuriy and Yashchuk, Valeriy and Naumovets, Anton and Ritter, Uwe and Dandekar, Thomas and Frohme, Marcus}, title = {C60 Fullerene as an Effective Nanoplatform of Alkaloid Berberine Delivery into Leukemic Cells}, series = {Pharmaceutics}, volume = {11}, journal = {Pharmaceutics}, number = {11}, publisher = {MDPI}, issn = {1999-4923}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-12932}, year = {2019}, abstract = {A herbal alkaloid Berberine (Ber), used for centuries in Ayurvedic, Chinese, Middle-Eastern, and native American folk medicines, is nowadays proved to function as a safe anticancer agent. Yet, its poor water solubility, stability, and bioavailability hinder clinical application. In this study, we have explored a nanosized carbon nanoparticle—C60 fullerene (C60)—for optimized Ber delivery into leukemic cells. Water dispersions of noncovalent C60-Ber nanocomplexes in the 1:2, 1:1, and 2:1 molar ratios were prepared. UV-Vis spectroscopy, dynamic light scattering (DLS), and atomic force microscopy (AFM) evidenced a complexation of the Ber cation with the negatively charged C60 molecule. The computer simulation showed that π-stacking dominates in Ber and C60 binding in an aqueous solution. Complexation with C60 was found to promote Ber intracellular uptake. By increasing C60 concentration, the C60-Ber nanocomplexes exhibited higher antiproliferative potential towards CCRF-CEM cells, in accordance with the following order: free Ber < 1:2 < 1:1 < 2:1 (the most toxic). The activation of caspase 3/7 and accumulation in the sub-G1 phase of CCRF-CEM cells treated with C60-Ber nanocomplexes evidenced apoptosis induction. Thus, this study indicates that the fast and easy noncovalent complexation of alkaloid Ber with C60 improved its in vitro efficiency against cancer cells.}, language = {en} } @article{GrebinykYashchukBashmakovaetal.2019, author = {Grebinyk, Anna and Yashchuk, Valeriy and Bashmakova, Nataliya and Gryn, Dmytro and Hagemann, Tobias and Naumenko, Antonina and Kutsevol, Nataliya and Dandekar, Thomas and Frohme, Marcus}, title = {A new triple system DNA-Nanosilver-Berberine for cancer therapy}, series = {Applied Nanoscience}, volume = {9}, journal = {Applied Nanoscience}, publisher = {Springer}, issn = {2190-5517}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-16105}, pages = {945 -- 956}, year = {2019}, abstract = {The isoquinoline quaternary alkaloid Berberine possesses a variety of pharmacological properties that suggests its promising application for an anticancer delivery system design utilizing its ability to intercalate DNA. In the current work, we have investigated the effects of Berberine on the human T cell leukemia cell line in vitro. Fluorescent microscopy of leukemic cells revealed Berberine nuclear localization. The results showed that Berberine inhibited leukemic cell growth in a time- and dose-dependent manner, that was associated with reactive oxygen species production intensification and caspase 3/7 activity increase with followed apoptosis induction. Berberine was used as a toxic and phototoxic agent for triple system synthesis along with DNA as a carrier and nanosilver as a plasmonic accelerator of Berberine electronic transitions and high energy emission absorbent centers. The proposed method allows to obtain the complex of DNA with Berberine molecules and silver nanoparticles. The optical properties of free components as well as their various combinations, including the final triple system DNA-Nanosilver-Berberine, were investigated. Obtained results support the possibility to use the triple system DNA-Nanosilver-Berberine as an alternative therapeutic agent for cancer treatment.}, language = {en} } @misc{GossingRadkeFrohmeetal.2016, author = {Gossing, Wilhelm and Radke, Lars and Frohme, Marcus and Biering, Henrik}, title = {ECS-Komplex - ein neuer Biomarker bei Wachstumshormonst{\"o}rungen?}, series = {Wissenschaftliche Beitr{\"a}ge 2016}, volume = {20}, journal = {Wissenschaftliche Beitr{\"a}ge 2016}, issn = {0949-8214}, doi = {10.15771/0949-8214_2016_1_3}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-5308}, pages = {23 -- 29}, year = {2016}, abstract = {St{\"o}rungen im Metabolismus des Wachstumshormons k{\"o}nnen sich als Wachstumshormonmangel oder -{\"u}berschuss (Akromegalie) {\"a}ußern. In beiden F{\"a}llen handelt es sich um seltene Krankheiten, die aufwendig behandelt werden m{\"u}ssen, da jeder Patient anders auf seine jeweilige Medikation anspricht. Zur Bestimmung des individuellen Ansprechverhaltens auf die medikament{\"o}se Behandlung wird Insulin-like Growth Factor 1 verwendet, das jedoch als unzuverl{\"a}ssig f{\"u}r die Therapiekontrolle gilt. Um die Diagnostik und Therapie von Wachstumshormonst{\"o}rungen zu verbessern, wurde in dieser Pilotstudie der Nutzen des neuen potenziellen Biomarkers Elongin B/C-Cullin5-Socs-box Komplex (ECS-Komplex) {\"u}berpr{\"u}ft. Die f{\"u}nf Proteine des Komplexes {\"u}ben zusammen einen negativen Feedback-Mechanismus auf den Wachstumshormonrezeptor aus und regulieren ihn in Abh{\"a}ngigkeit vom Wachstumshormonspiegel im Blut. F{\"u}r diese Pilotstudie wurden vier Patienten mit Wachstumshormondefizienz und 15 Patienten mit Akromegalie rekrutiert. Die Messung von Unterschieden in der Expression der Gene auf RNA-Ebene in Blutproben der Patienten erlaubt erste Aussagen {\"u}ber deren Eignung als therapeutische Marker f{\"u}r diese Krankheiten.}, language = {de} } @article{GossingFrohmeRadke2020, author = {Gossing, Wilhelm and Frohme, Marcus and Radke, Lars}, title = {Biomarkers for Liquid Biopsies of Pituitary Neuroendocrine Tumors}, series = {Biomedicines}, volume = {8}, journal = {Biomedicines}, number = {6}, issn = {2227-9059}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-13307}, year = {2020}, abstract = {Pituitary neuroendocrine tumors (PitNET) do not only belong to the most common intracranial neoplasms but seem to be generally more common than has been thought. Minimally invasive liquid biopsies have the potential to improve their early screening efficiency as well as monitor prognosis by facilitating the diagnostic procedures. This review aims to assess the potential of using liquid biopsies of different kinds of biomarker species that have only been obtained from solid pituitary tissues so far. Numerous molecules have been associated with the development of a PitNET, suggesting that it often develops from the cumulative effects of many smaller genetic or epigenetic changes. These minor changes eventually pile up to switch critical molecules into tumor-promoting states, which may be the key regulatory nodes representing the most potent marker substances for a diagnostic test. Drugs targeting these nodes may be superior for the therapeutic outcome and therefore the identification of such pituitary-specific cellular key nodes will help to accelerate their application in medicine. The ongoing genetic degeneration in pituitary adenomas suggests that repeated tumor profiling via liquid biopsies will be necessary for personalized and effective treatment solutions.}, language = {en} } @article{GossingRadkeBieringetal.2021, author = {Gossing, Wilhelm and Radke, Lars and Biering, Henrik and Diederich, Sven and Mai, Knut and Frohme, Marcus}, title = {The ElonginB/C-Cullin5-SOCS-Box-Complex Is a Potential Biomarker for Growth Hormone Disorders}, series = {Biomedicines}, volume = {9}, journal = {Biomedicines}, number = {2}, publisher = {MDPI}, issn = {2227-9059}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-13802}, year = {2021}, abstract = {Insulin-like growth factor 1 (IGF-1) is the standard biochemical marker for the diagnosis and treatment control of acromegaly and growth hormone deficiency (GHD). However, its limitations necessitate the screening for new specific and sensitive biomarkers. The elonginB/C-cullin5-SOCS-box-complex (ECS-complex) (an intracellular five-protein complex) is stimulated by circulating growth hormone (GH) and regulates GH receptor levels through a negative feedback loop. It mediates the cells' sensitivity for GH and therefore, represents a potent new biomarker for those diseases. In this study, individual ECS-complex proteins were measured in whole blood samples of patients with acromegaly (n = 32) or GHD (n = 12) via ELISA and compared to controls. Hierarchical clustering of the results revealed that by combining the three ECS-complex proteins suppressor of cytokine signaling 2 (SOCS2), cullin-5 and ring-box protein 2 (Rbx-2), 93\% of patient samples could be separated from controls, despite many patients having a normal IGF-1 or not receiving medical treatment. SOCS2 showed the best individual diagnostic performance with an overall accuracy of 0.93, while the combination of the three proteins correctly identified all patients and controls. This resulted in perfect sensitivity and specificity for all patient groups, which demonstrates potential benefits of the ECS-complex proteins as clinical biomarkers for the diagnostics of GH-related diseases and substantiates their important role in GH metabolism.}, language = {en} } @article{KagelFrohmeGloekler2019, author = {Kagel, Heike and Frohme, Marcus and Gl{\"o}kler, J{\"o}rn}, title = {Photoacids in biochemical applications}, series = {Journal of Cellular Biotechnology}, volume = {4}, journal = {Journal of Cellular Biotechnology}, number = {1-2}, publisher = {IOS Press}, issn = {2352-3697}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-16123}, pages = {23 -- 30}, year = {2019}, abstract = {BACKGROUND: After excitation with light photoacids can change the pH in a solution by release of a proton. They have been used mostly for excited state proton transfer studies. In this review the general functionality and mechanisms and the subdivision of photoacids is explained. STATE OF THE ART: Different uses of photoacids are described, covering a wide range of various biochemical topics, focusing on biochemical applications. Examples for the introduced subdivisions are covered. CONCLUSIONS AND OUTLOOK: The areas in which photoacids can be employed are diverse. Photoacids have a promising future in biotechnology and biochemistry and should be considered for upcoming applications, especially in non-invasive control of biochemical reactions.}, language = {en} } @article{SilbermannWernickePospisiletal.2013, author = {Silbermann, Jascha and Wernicke, Catrin and Pospisil, Heike and Frohme, Marcus}, title = {RefPrimeCouch—a reference gene primer CouchApp}, series = {Database: The Journal of Biological Databases and Curation}, volume = {2013}, journal = {Database: The Journal of Biological Databases and Curation}, issn = {1758-0463}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-6330}, pages = {8}, year = {2013}, abstract = {To support a quantitative real-time polymerase chain reaction standardization project, a new reference gene database application was required. The new database application was built with the explicit goal of simplifying not only the development process but also making the user interface more responsive and intuitive. To this end, CouchDB was used as the backend with a lightweight dynamic user interface implemented client-side as a one-page web application. Data entry and curation processes were streamlined using an OpenRefine-based workflow. The new RefPrimeCouch database application provides its data online under an Open Database License.}, language = {en} } @article{PfeilSiptrothPospisiletal.2023, author = {Pfeil, Juliane and Siptroth, Julienne and Pospisil, Heike and Frohme, Marcus and Hufert, Frank T. and Moskalenko, Olga and Yateem, Murad and Nechyporenko, Alina}, title = {Classification of Microbiome Data from Type 2 Diabetes Mellitus Individuals with Deep Learning Image Recognition}, series = {Big Data and Cognitive Computing}, volume = {7}, journal = {Big Data and Cognitive Computing}, number = {1}, publisher = {MDPI}, issn = {2504-2289}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-17184}, year = {2023}, abstract = {Microbiomic analysis of human gut samples is a beneficial tool to examine the general well-being and various health conditions. The balance of the intestinal flora is important to prevent chronic gut infections and adiposity, as well as pathological alterations connected to various diseases. The evaluation of microbiome data based on next-generation sequencing (NGS) is complex and their interpretation is often challenging and can be ambiguous. Therefore, we developed an innovative approach for the examination and classification of microbiomic data into healthy and diseased by visualizing the data as a radial heatmap in order to apply deep learning (DL) image classification. The differentiation between 674 healthy and 272 type 2 diabetes mellitus (T2D) samples was chosen as a proof of concept. The residual network with 50 layers (ResNet-50) image classification model was trained and optimized, providing discrimination with 96\% accuracy. Samples from healthy persons were detected with a specificity of 97\% and those from T2D individuals with a sensitivity of 92\%. Image classification using DL of NGS microbiome data enables precise discrimination between healthy and diabetic individuals. In the future, this tool could enable classification of different diseases and imbalances of the gut microbiome and their causative genera.}, language = {en} } @article{KhrutbaNikitchenkoBalykinetal.2025, author = {Khrutba, Viktoriia and Nikitchenko, Yuliia and Balykin, Ivan and Nechyporenko, Alina and Frohme, Marcus}, title = {Academic \& educational networking as a mechanism for the resilience of university cooperation in the digital era}, series = {European Journal of Interdisciplinary Issues}, volume = {2}, journal = {European Journal of Interdisciplinary Issues}, number = {2}, publisher = {East European Association of Scientists}, address = {Warszaw}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-20957}, pages = {84 -- 97}, year = {2025}, abstract = {The article investigates the evolution of digital educational networks as instruments of resilience and sustainability within German-Ukrainian higher education cooperation. Its primary objective is to analyze how academic networking contributes to maintaining educational continuity, fostering innovation, and strengthening institutional adaptability under crisis conditions. The study focuses on two representative initiatives, the Digital Teaching Network (DTN) and the Wildau-Kharkiv IT Bridge, which exemplify the transition from traditional digital platforms to interconnected network ecosystems. Methodologically, the research combines quantitative and qualitative approaches, including an online survey, focus group discussions, and content analysis of responses from 185 participants representing 21 universities in both countries. This mixed-method design enables a comprehensive understanding of the motivational, organizational, and social determinants of participation in educational networks. The analysis identifies four main categories of network actors, initiators, active collaborators, occasional participants, and observers, whose interaction defines the internal dynamics and resilience of such networks. The study's findings demonstrate that networking serves as a key mechanism for sustaining academic interaction, enhancing educators' digital competencies, and facilitating interdisciplinary collaboration. It further shows that niche educational networks, those focused on specific thematic or professional domains, play an increasingly important role in advancing specialized expertise and fostering trust-based partnerships beyond the lifespan of individual projects. The scientific novelty of the article lies in conceptualizing the shift from digital platforms as technical tools to educational networks as socio-institutional ecosystems. Practically, the results highlight the potential of network-based cooperation to support the sustainable development, modernization, and internationalization of Ukrainian higher education in the digital era.}, language = {en} } @misc{KoberHanschkeMacholzetal.2018, author = {Kober, Liane and Hanschke, Christian and Macholz, Rainer and Frohme, Marcus}, title = {Die einfache Extraktion und Quantifizierung von sprengstofftypischen Verbindungen in Bodenproben {\"u}ber LC-MS/MS}, series = {Wissenschaftliche Beitr{\"a}ge 2018}, volume = {22}, journal = {Wissenschaftliche Beitr{\"a}ge 2018}, issn = {0949-8214}, doi = {10.15771/0949-8214_2018_1}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-10219}, pages = {7 -- 16}, year = {2018}, abstract = {Die Kontamination von Fl{\"a}chen mit R{\"u}stungsaltlasten durch sprengstofftypische Verbindungen (STV) wie 2,4,6-Trinitrotoluol (TNT) ist nach wie vor ein großes Risiko f{\"u}r Gesundheit und Umwelt. Die Hochdruckfl{\"u}ssigchromatographie (HPLC) ist in Kombination mit der Tandem-Massenspektrometrie (MS/MS) ein besonders sensitives und exaktes Verfahren zur Konzentrationsbestimmung derartiger Umweltkontaminanten. Jedoch ben{\"o}tigen die derzeit eingesetzten Methoden zur Extraktion und Quantifizierung viel Zeit und Bodenmaterial. Wir haben daher eine 20-min{\"u}tige LC-MS/MS-Methode entwickelt, die in einer Probe simultan acht STV qualitativ und quantitativ nachweisen kann. Im Vergleich zur EPA-Referenzmethode konnte bei der Extraktion die eingesetzte Bodenmenge von 10 g auf 2 g reduziert und die Extraktionsdauer von 18 h auf 30 min verk{\"u}rzt werden. Die abschließende Validierung zeigte eine gute Reproduzierbarkeit und mit etablierten Protokollen vergleichbare Detektions- (LOD) und Quantifizierungslimits (LOQ), so dass die optimierten Methoden f{\"u}r eine schnelle und zuverl{\"a}ssige Analyse von Realproben eingesetzt werden konnten.}, language = {de} } @misc{GeringKoberBroedeletal.2017, author = {Gering, Vanessa and Kober, Liane and Br{\"o}del, Oliver and Koskei, Richard and Mugendi, Beatrice and Frohme, Marcus}, title = {LC-MS/MS als Methode zur Detektion und Quantifizierung der Inhaltsstoffe in Kaffee}, series = {Wissenschaftliche Beitr{\"a}ge 2017}, volume = {21}, journal = {Wissenschaftliche Beitr{\"a}ge 2017}, issn = {0949-8214}, doi = {10.15771/0949-8214_2017_1}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:526-opus4-9362}, pages = {7 -- 12}, year = {2017}, abstract = {Kaffee ist das wohl popul{\"a}rste Heißgetr{\"a}nk weltweit. Zwei botanische Arten sind f{\"u}r den Weltmarkt von Bedeutung und unterscheiden sich bez{\"u}glich ihres Anbaugebietes und der Inhaltsstoffe. Kaffee enth{\"a}lt {\"u}ber 850 bisher identifizierte Aromastoffe, welche den Geschmack bilden. Außerdem haben die Prozessierung der geernteten Kirsche bis zur Bohne, das R{\"o}stprofil und das Aufbr{\"u}hen einen großen Einfluss darauf. In dieser Arbeit wurde die Auswirkung der Prozessierungsmethode auf ausgew{\"a}hlte Inhaltsstoffe mit Hilfe der Fl{\"u}sssig-Chromatographie-Tandem-Massenspektroskopie (LC-MS/MS) untersucht. Daf{\"u}r wurden drei Prozessierungsmethoden, die unterschiedlich viel Wasser f{\"u}r das Abl{\"o}sen des Fruchtfleisches von den Kaffeekirschen ben{\"o}tigen, und zwei Kultursorten miteinander verglichen. Die Ergebnisse zeigten einen geringf{\"u}gig h{\"o}heren Gehalt der zwei wichtigsten Inhaltsstoffe Koffein und Chlorogens{\"a}ure in den Bohnen, bei deren Prozessierung im Eco-Pulper-Verfahren weniger Wasser eingesetzt wurde. Bis auf einen verringerten Gehalt an Saccharose wurde f{\"u}r weitere wichtige Inhaltsstoffe (Acrylamid, Niacin, Zitronens{\"a}ure und Vanillin) kein signifikanter Unterschied bei h{\"o}herem Wassereinsatz gefunden. Insofern man die untersuchten Inhaltsstoffe als Qualit{\"a}tsmarker betrachtet, ist im Vergleich zu den anderen Prozessierungsmethoden das Eco-Pulper-Verfahren die beste Wahl, insbesondere da es als wassersparende Methode einen entscheidenden Beitrag zur Nachhaltigkeit des Kaffeeanbaus leistet.}, language = {de} }