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Safety assurance is a major challenge in the design of complex embedded and Cyber-physical Systems. Especially, changes and adoptions during the design or run-time of an embedded system invalidate former safety analyses and require an adaptation of the system's safety analysis models. In this paper, we present a methodology to fill up empty safety analysis artifacts in component fault trees using so-called inner port dependency traces to describe failure propagation. Thus, enabling a imprecise but rapid safety analysis of an entire system at early development stages or during system run-time for the automated certification of Cyber-physical Systems. We evaluate our approach using case study from the automotive domain.