TY - CHAP A1 - Rush, Logan A1 - Schmid, Marina A1 - Raptis, Georgios T1 - Privacy Challenges in Genomic Data: A Scoping Review of Risks, Mitigation Strategies, and Research Gaps. T2 - Information and Communication Technology: 13th International Symposium, SOICT 2024, Danang, Vietnam, December 13–15, 2024, Proceedings, Part II N2 - Advances in genomic research have created new privacy challenges. This scoping review analyzes the risks associated with the processing, storage, and sharing of genomic data including epigenetics, and examines current privacy protection strategies. It also attempts to identify research gaps in this area. Using the PRISMA methodology, 37 relevant studies were identified and analyzed. The results of the risk assessment can be grouped into four main themes: Risks posed by processing of functional genomic data, sharing of genomic data, patient (re-)identification, and dividuality, i.e. the extending of privacy risks to blood relatives. The identified risk mitigation strategies were systematically categorized into five classes: pre-release measures, governance, secure data processing and exchange, access restriction and transparency, anonymization and masking. However, there are some important research gaps that still need to be addressed. The current literature neglects to assess the likelihood of potential breaches and tends to focus only on assessing possible scenarios of privacy risks. It also mainly fails to assess the role of contextualized data and the effectiveness of policies and governance systems with respect to privacy risks. Y1 - 2025 U6 - https://doi.org/10.1007/978-981-96-4285-4_34 SP - 416 EP - 430 PB - Springer CY - Singapore ER - TY - JOUR A1 - Rusavy, Zdenek A1 - Cechova, Hana A1 - Dendorfer, Sebastian A1 - Kalis, Vladimir A1 - Ismail, Khaled M. T1 - Is the Finnish grip tight enough? A manometric study of two manual perineal protection techniques JF - Acta Obstetricia et Gynecologica Scandinavica Y1 - 2025 U6 - https://doi.org/10.1111/aogs.15033 VL - 104 IS - 2 SP - 423 EP - 425 PB - Wiley ER - TY - JOUR A1 - Foltan, Maik A1 - Dinh, D. A1 - Gruber, Michael A1 - Müller, Thomas A1 - Hart, C. A1 - Krenkel, Lars A1 - Schmid, C. A1 - Lehle, Karla T1 - Incidence of neutrophil extracellular traps (NETs) in different membrane oxygenators: pilot in vitro experiments in commercially available coated membranes JF - Journal of artificial organs : the official journal of the Japanese Society for Artificial Organs N2 - Neutrophil extracellular traps (NETs) were detected in blood samples and in cellular deposits of oxygenator membranes during extracorporeal membrane oxygenation (ECMO) therapy and may be responsible for thrombogenesis. The aim was to evaluate the effect of the base material of gas fiber (GF, polymethylpentene) and heat exchange (HE) membranes and different antithrombogenic coatings on isolated granulocytes from healthy volunteers under static culture conditions. Contact of granulocytes with membranes from different ECMO oxygenators (with different surface coatings) and uncoated-GFs allowed detection of adherent cells and NETotic nuclear structures (normal, swollen, ruptured) using nuclear staining. Flow cytometry was used to identify cell activation (CD11b/CD62L, oxidative burst) of non-adherent cells. Uncoated-GFs were used as a reference. Within 3 h, granulocytes adhered to the same extent on all surfaces. In contrast, the ratio of normal to NETotic cells was significantly higher for uncoated-GFs (56-83%) compared to all coated GFs (34-72%) (p < 0.001) with no difference between the coatings. After material contact, non-adherent cells remained vital with unchanged oxidative burst function and the proportion of activated cells remained low. The expression of activation markers was independent of the origin of the GF material. In conclusion, the polymethylpentene surfaces of the GFs already induce NET formation. Antithrombogenic coatings can already reduce the proportion of NETotic nuclei. However, it cannot be ruled out that NET formation can induce thrombotic events. Therefore, new surfaces or coatings are required for future ECMO systems and long-term implantable artificial lungs. Y1 - 2025 U6 - https://doi.org/10.1007/s10047-024-01486-4 ER - TY - JOUR A1 - Deuter, Daniel A1 - Haj, Amer A1 - Brawanski, Alexander A1 - Krenkel, Lars A1 - Schmidt, Nils Ole A1 - Doenitz, Christian T1 - Fast simulation of hemodynamics in intracranial aneurysms for clinical use JF - Acta Neurochirurgica N2 - BACKGROUND: A widely accepted tool to assess hemodynamics, one of the most important factors in aneurysm pathophysiology, is Computational Fluid Dynamics (CFD). As current workflows are still time consuming and difficult to operate, CFD is not yet a standard tool in the clinical setting. There it could provide valuable information on aneurysm treatment, especially regarding local risks of rupture, which might help to optimize the individualized strategy of neurosurgical dissection during microsurgical aneurysm clipping. METHOD: We established and validated a semi-automated workflow using 3D rotational angiographies of 24 intracranial aneurysms from patients having received aneurysm treatment at our centre. Reconstruction of vessel geometry and generation of volume meshes was performed using AMIRA 6.2.0 and ICEM 17.1. For solving ANSYS CFX was used. For validational checks, tests regarding the volumetric impact of smoothing operations, the impact of mesh sizes on the results (grid convergence), geometric mesh quality and time tests for the time needed to perform the workflow were conducted in subgroups. RESULTS: Most of the steps of the workflow were performed directly on the 3D images requiring no programming experience. The workflow led to final CFD results in a mean time of 22 min 51.4 s (95%-CI 20 min 51.562 s-24 min 51.238 s, n = 5). Volume of the geometries after pre-processing was in mean 4.46% higher than before in the analysed subgroup (95%-CI 3.43-5.50%). Regarding mesh sizes, mean relative aberrations of 2.30% (95%-CI 1.51-3.09%) were found for surface meshes and between 1.40% (95%-CI 1.07-1.72%) and 2.61% (95%-CI 1.93-3.29%) for volume meshes. Acceptable geometric mesh quality of volume meshes was found. CONCLUSIONS: We developed a semi-automated workflow for aneurysm CFD to benefit from hemodynamic data in the clinical setting. The ease of handling opens the workflow to clinicians untrained in programming. As previous studies have found that the distribution of hemodynamic parameters correlates with thin-walled aneurysm areas susceptible to rupture, these data might be beneficial for the operating neurosurgeon during aneurysm surgery, even in acute cases. Y1 - 2025 U6 - https://doi.org/10.1007/s00701-025-06469-9 VL - 167 PB - Springer ER - TY - JOUR A1 - Schaeffer, Leon A1 - Herrmann, David A1 - Schratzenstaller, Thomas A1 - Dendorfer, Sebastian A1 - Böhm, Valter T1 - Theoretical considerations on stiffness characteristics of a 3-dimensional tensegrity joint model for the use in dynamic hand orthoses JF - Journal of Medical Robotics Research Y1 - 2025 U6 - https://doi.org/10.1142/S2424905X25400069 PB - World Scientific ER - TY - JOUR A1 - Maier, Eva A1 - Zentgraf, Jan A1 - Angele, Eveline A1 - Zorzin, José A1 - Taschner, Michael A1 - Widbiller, Matthias A1 - Galler, Kerstin A1 - Schratzenstaller, Thomas T1 - A re-usable 3D-printed training model for the endodontic management of dental trauma in immature teeth JF - International endodontic journal N2 - AIM: To develop a 3D-printed model enabling treatment simulation of trauma-related endodontic and restorative procedures like revitalization or placement of an apical plug on teeth with incomplete root formation. METHODOLOGY: To generate a realistic training model suitable for trauma-related simulations, CT-Data sets were segmented, combined, adjusted and optimized using computer-aided design features. Specific focus was on optimally reflecting characteristics of immature teeth like open apical foramina and thin root walls. For reflection of the revitalization process, a set-up including a tube filled with red liquid under pressure was developed to be perforated during the procedure by the trainee, simulating bleeding from the apical papilla into the root canal system. Design was based on a combination of cost-effective simple parts combined with 3D-printed components to achieve maximal accessibility, exchangeability and re-usability. Model assembly and preparation were described in step-by-step instructions. RESULTS: As a result of the developmental process, the presented model qualifies for the training of the endodontic management of complications on immature teeth after dental trauma. Step-by-step descriptions aligned with the clinical procedures are performable for a revitalization procedure, for pulpotomy followed by fragment re-attachment and splint application and for placement of an apical plug using hydraulic calcium silicate cements. CONCLUSIONS: The model successfully achieved its intended objectives, so that it may be used in the future in various dental trauma treatment simulations for undergraduate and postgraduate education on the endodontic management of trauma-related therapies in immature teeth. Its common manufacturing process, affordability and re-usability support accessibility and sustainability. Y1 - 2025 U6 - https://doi.org/10.1111/iej.14235 SN - 1365-2591 VL - 2025 PB - Wiley ER - TY - CHAP A1 - Schaeffer, Leon A1 - Schmaußer, Theresa A1 - Herrmann, David A1 - Lehmann, Lukas A1 - Dendorfer, Sebastian A1 - Böhm, Valter T1 - Multi-Body Simulation of a Dynamic Hand Orthosis based on a Prestressed Compliant Structure Incorporating the Human Hand T2 - 2025 International Symposium on Medical Robotics (ISMR), May 14-16, 2025, Atlanta, GA, USA, N2 - Many dynamic hand orthoses use one degree of freedom joints, such as hinge joints. Therefore, these orthoses can only partially replicate the complex, multi-axis movement of the hand. A possible solution for this is the use of prestressed compliant structures as the basis for orthoses. Determining the joint forces in the wrist and optimizing the dynamic orthosis to influence these forces as well as acting muscle forces are important steps in the development of these orthoses. For this reason, in this work multi-body simulation models of an orthosis with human hand models are presented. Based on these theoretical investigations, more detailed orthosis models as well as initial prototypes of prestressed compliant dynamic hand orthoses can be developed. KW - Hands KW - Wrist KW - Systematics KW - Simulation KW - Dynamics KW - Refining KW - Prototypes KW - Usability KW - Research and development KW - Testing Y1 - 2025 U6 - https://doi.org/10.1109/ISMR67322.2025.11025982 SP - 80 EP - 86 PB - IEEE ER - TY - JOUR A1 - Maerkl, Raphaela A1 - Rueckert, Tobias A1 - Rauber, David A1 - Gutbrod, Max A1 - Weber Nunes, Danilo A1 - Palm, Christoph T1 - Enhancing generalization in zero-shot multi-label endoscopic instrument classification JF - International Journal of Computer Assisted Radiology and Surgery N2 - Purpose Recognizing previously unseen classes with neural networks is a significant challenge due to their limited generalization capabilities. This issue is particularly critical in safety-critical domains such as medical applications, where accurate classification is essential for reliability and patient safety. Zero-shot learning methods address this challenge by utilizing additional semantic data, with their performance relying heavily on the quality of the generated embeddings. Methods This work investigates the use of full descriptive sentences, generated by a Sentence-BERT model, as class representations, compared to simpler category-based word embeddings derived from a BERT model. Additionally, the impact of z-score normalization as a post-processing step on these embeddings is explored. The proposed approach is evaluated on a multi-label generalized zero-shot learning task, focusing on the recognition of surgical instruments in endoscopic images from minimally invasive cholecystectomies. Results The results demonstrate that combining sentence embeddings and z-score normalization significantly improves model performance. For unseen classes, the AUROC improves from 43.9% to 64.9%, and the multi-label accuracy from 26.1% to 79.5%. Overall performance measured across both seen and unseen classes improves from 49.3% to 64.9% in AUROC and from 37.3% to 65.1% in multi-label accuracy, highlighting the effectiveness of our approach. Conclusion These findings demonstrate that sentence embeddings and z-score normalization can substantially enhance the generalization performance of zero-shot learning models. However, as the study is based on a single dataset, future work should validate the method across diverse datasets and application domains to establish its robustness and broader applicability. KW - Generalized zero-shot learning KW - Sentence embeddings KW - Z-score normalization KW - Multi-label classification KW - Surgical instruments Y1 - 2025 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:898-opus4-85674 N1 - Corresponding author der OTH Regensburg: Raphaela Maerkl VL - 20 SP - 1577 EP - 1587 PB - Springer Nature ER - TY - JOUR A1 - Barthel, Mareike A1 - Süß, Franz A1 - Dendorfer, Sebastian T1 - Application of a transformer encoder for the prediction of intra-abdominal pressure JF - Computer Methods in Biomechanics and Biomedical Engineering N2 - Intra-abdominal pressure is a significant physiological parameter influencing spinal stability and pelvic floor health. This study investigates the potential of a transformer encoder model to predict IAP using motion capture data and musculoskeletal modeling. Data from 211 subjects performing walking, fast walking, and running were used to train a transformer encoder. The model showed promising results with an overall Mean Absolute Percentage Error of 13.5% and a Pearson correlation coefficient of 0.85. Predictions for fast walking and running proved to be more challenging compared to walking, which was attributed to the greater variability and complexity of faster movements. KW - Intra-abdominal pressure KW - transformer encoder KW - machine learning KW - motion capture KW - musculoskeletal modeling Y1 - 2025 U6 - https://doi.org/10.1080/10255842.2025.2586143 N1 - Corresponding author der OTH Regensburg: Mareike Barthel PB - Taylor & Francis ER - TY - GEN ED - Palm, Christoph ED - Breininger, Katharina ED - Deserno, Thomas M. ED - Handels, Heinz ED - Maier, Andreas ED - Maier-Hein, Klaus H. ED - Tolxdorff, Thomas M. T1 - Bildverarbeitung für die Medizin 2025 BT - Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025 N2 - Die Konferenz "BVM - Bildverarbeitung für die Medizin" ist seit vielen Jahren als die nationale Plattform für den Austausch von Ideen und die Diskussion der neuesten Forschungsergebnisse im Bereich der Medizinischen Bildverarbeitung und der Künstlichen Intelligenz (KI) etabliert. Auch 2025 werden wir aktuelle Forschungsergebnisse vorstellen und Gespräche zwischen (jungen) Wissenschaftler*innen, Industrie und Anwender*innen vertiefen. Die Beiträge dieses Bandes – die meisten davon in englischer Sprache - umfassen alle Bereiche der medizinischen Bildverarbeitung, insbesondere die Bildgebung und -akquisition, Segmentierung und Analyse, Registrierung, Visualisierung und Animation, computerunterstützte Diagnose sowie bildgestützte Therapieplanung und Therapie. Hierbei kommen Methoden des maschinellen Lernens, der biomechanischen Modellierung sowie der Validierung und Qualitätssicherung zum Einsatz. Das Kapitel "Leveraging multiple total body segmentators and anatomy-informed post-processing for segmenting bones in Lung CTs" ist unter einer Creative Commons Attribution 4.0 International License über link.springer.com frei verfügbar (Open Access). Die Herausgebenden Prof. Palm forscht im Bereich KI für die Medizin mit einem Schwerpunkt in der Analyse endoskopischer Bilddaten zur computerunterstützten Diagnose und Therapie. Prof. Breininger entwickelt robuste Ansätze des maschinellen Lernens in verschiedenen interdisziplinären Bereichen, mit einem Schwerpunkt auf medizinischen Bilddaten. Prof. Deserno forscht in Biosignal- und Bilderzeugung und -verarbeitung, insbesondere in der videobasierten Vitaldatenmessung. Prof. Handels entwickelt problemoptimierte, lernfähige Bildverarbeitungsmethoden und integriert diese in hybride Bildverarbeitungssysteme zur Unterstützung der medizinischen Diagnostik und Therapie. Prof. Maier entwickelt Anwendungen in der medizinischen Bildverarbeitung zur Diagnoseunterstützung bis hin zur Schichtbildberechnung durch künstliche Intelligenz. Prof. Maier-Hein forscht im Bereich maschinelles Lernen und entwickelt Open-Source-Lösungen wie das Medical Imaging Interaction Toolkit (MITK), Kaapana oder das nnU-Net. Prof. em. Tolxdorff ist Experte für maschinelles Lernen, biomedizinisches Datenmanagement, Datenvisualisierung und -analyse sowie Medizinproduktentwicklung in klinischen Workflows. KW - Bildverarbeitung KW - Computerunterstützte Medizin KW - Bildgebendes Verfahren KW - Bildanalyse KW - Deep Learning Y1 - 2025 SN - 978-3-658-47421-8 U6 - https://doi.org/10.1007/978-3-658-47422-5 SN - 1431-472X PB - Springer Fachmedien Wiesbaden CY - Wiesbaden ER - TY - JOUR A1 - Lehle, Karla A1 - Philipp, Alois A1 - Krenkel, Lars A1 - Gruber, Michael A1 - Hiller, Karl-Anton A1 - Müller, Thomas A1 - Lubnow, Matthias T1 - Thrombocytopenia During Venovenous Extracorporeal Membrane Oxygenation in Adult Patients With Bacterial, Viral, and COVID-19 Pneumonia JF - ASAIO Journal N2 - Contact of blood with artificial surfaces triggers platelet activation. The aim was to compare platelet kinetics after venovenous extracorporeal membrane oxygenation (V-V ECMO) start and after system exchange in different etiologies of acute lung failure. Platelet counts and coagulation parameters were analyzed from adult patients with long and exchange-free (≥8 days) ECMO runs (n = 330) caused by bacterial (n = 142), viral (n = 76), or coronavirus disease 2019 (COVID-19) (n = 112) pneumonia. A subpopulation requiring a system exchange and with long, exchange-free runs of the second oxygenator (≥7 days) (n = 110) was analyzed analogously. Patients with COVID-19 showed the highest platelet levels before ECMO implantation. Independent of the underlying disease and ECMO type, platelet counts decreased significantly within 24 hours and reached a steady state after 5 days. In the subpopulation, at the day of a system exchange, platelet counts were lower compared with ECMO start, but without differences between underlying diseases. Subsequently, platelets remained unchanged in the bacterial pneumonia group, but increased in the COVID-19 and viral pneumonia groups within 2–4 days, whereas D-dimers decreased and fibrinogen levels increased. Thus, overall platelet counts on V-V ECMO show disease-specific initial dynamics followed by an ongoing consumption by the ECMO device, which is not boosted by new artificial surfaces after a system exchange. Y1 - 2025 U6 - https://doi.org/10.1097/MAT.0000000000002383 SN - 1058-2916 SN - 1538-943X PB - Wolters Kluwer ER - TY - GEN A1 - Dendorfer, Sebastian T1 - Towards a deeper understanding of Pelvic Floor Disorders via Biomechanical Models Y1 - 2025 ER -