TY - JOUR A1 - Ebigbo, Alanna A1 - Palm, Christoph A1 - Probst, Andreas A1 - Mendel, Robert A1 - Manzeneder, Johannes A1 - Prinz, Friederike A1 - Souza Jr., Luis Antonio de A1 - Papa, João Paulo A1 - Siersema, Peter A1 - Messmann, Helmut T1 - A technical review of artificial intelligence as applied to gastrointestinal endoscopy: clarifying the terminology JF - Endoscopy International Open N2 - The growing number of publications on the application of artificial intelligence (AI) in medicine underlines the enormous importance and potential of this emerging field of research. In gastrointestinal endoscopy, AI has been applied to all segments of the gastrointestinal tract most importantly in the detection and characterization of colorectal polyps. However, AI research has been published also in the stomach and esophagus for both neoplastic and non-neoplastic disorders. The various technical as well as medical aspects of AI, however, remain confusing especially for non-expert physicians. This physician-engineer co-authored review explains the basic technical aspects of AI and provides a comprehensive overview of recent publications on AI in gastrointestinal endoscopy. Finally, a basic insight is offered into understanding publications on AI in gastrointestinal endoscopy. KW - Diagnose KW - Maschinelles Lernen KW - Gastroenterologie KW - Künstliche Intelligenz KW - Barrett's esophagus KW - Deep learning Y1 - 2019 U6 - https://doi.org/10.1055/a-1010-5705 VL - 07 IS - 12 SP - 1616 EP - 1623 PB - Georg Thieme Verlag CY - Stuttgart ER - TY - GEN A1 - Ebigbo, Alanna A1 - Rauber, David A1 - Ayoub, Mousa A1 - Birzle, Lisa A1 - Matsumura, Tomoaki A1 - Probst, Andreas A1 - Steinbrück, Ingo A1 - Nagl, Sandra A1 - Römmele, Christoph A1 - Meinikheim, Michael A1 - Scheppach, Markus W. A1 - Palm, Christoph A1 - Messmann, Helmut T1 - Early Esophageal Cancer and the Generalizability of Artificial Intelligence T2 - Endoscopy N2 - Aims Artificial Intelligence (AI) systems in gastrointestinal endoscopy are narrow because they are trained to solve only one specific task. Unlike Narrow-AI, general AI systems may be able to solve multiple and unrelated tasks. We aimed to understand whether an AI system trained to detect, characterize, and segment early Barrett’s neoplasia (Barrett’s AI) is only capable of detecting this pathology or can also detect and segment other diseases like early squamous cell cancer (SCC). Methods 120 white light (WL) and narrow-band endoscopic images (NBI) from 60 patients (1 WL and 1 NBI image per patient) were extracted from the endoscopic database of the University Hospital Augsburg. Images were annotated by three expert endoscopists with extensive experience in the diagnosis and endoscopic resection of early esophageal neoplasias. An AI system based on DeepLabV3+architecture dedicated to early Barrett’s neoplasia was tested on these images. The AI system was neither trained with SCC images nor had it seen the test images prior to evaluation. The overlap between the three expert annotations („expert-agreement“) was the ground truth for evaluating AI performance. Results Barrett’s AI detected early SCC with a mean intersection over reference (IoR) of 92% when at least 1 pixel of the AI prediction overlapped with the expert-agreement. When the threshold was increased to 5%, 10%, and 20% overlap with the expert-agreement, the IoR was 88%, 85% and 82%, respectively. The mean Intersection Over Union (IoU) – a metric according to segmentation quality between the AI prediction and the expert-agreement – was 0.45. The mean expert IoU as a measure of agreement between the three experts was 0.60. Conclusions In the context of this pilot study, the predictions of SCC by a Barrett’s dedicated AI showed some overlap to the expert-agreement. Therefore, features learned from Barrett’s cancer-related training might be helpful also for SCC prediction. Our results allow different possible explanations. On the one hand, some Barrett’s cancer features generalize toward the related task of assessing early SCC. On the other hand, the Barrett’s AI is less specific to Barrett’s cancer than a general predictor of pathological tissue. However, we expect to enhance the detection quality significantly by extending the training to SCC-specific data. The insight of this study opens the way towards a transfer learning approach for more efficient training of AI to solve tasks in other domains. Y1 - 2024 U6 - https://doi.org/10.1055/s-0044-1783775 VL - 56 IS - S 02 SP - S428 PB - Thieme CY - Stuttgart ER - TY - GEN A1 - Scheppach, Markus W. A1 - Mendel, Robert A1 - Rauber, David A1 - Probst, Andreas A1 - Nagl, Sandra A1 - Römmele, Christoph A1 - Meinikheim, Michael A1 - Palm, Christoph A1 - Messmann, Helmut A1 - Ebigbo, Alanna T1 - Artificial Intelligence (AI) improves endoscopists’ vessel detection during endoscopic submucosal dissection (ESD) T2 - Endoscopy N2 - Aims While AI has been successfully implemented in detecting and characterizing colonic polyps, its role in therapeutic endoscopy remains to be elucidated. Especially third space endoscopy procedures like ESD and peroral endoscopic myotomy (POEM) pose a technical challenge and the risk of operator-dependent complications like intraprocedural bleeding and perforation. Therefore, we aimed at developing an AI-algorithm for intraprocedural real time vessel detection during ESD and POEM. Methods A training dataset consisting of 5470 annotated still images from 59 full-length videos (47 ESD, 12 POEM) and 179681 unlabeled images was used to train a DeepLabV3+neural network with the ECMT semi-supervised learning method. Evaluation for vessel detection rate (VDR) and time (VDT) of 19 endoscopists with and without AI-support was performed using a testing dataset of 101 standardized video clips with 200 predefined blood vessels. Endoscopists were stratified into trainees and experts in third space endoscopy. Results The AI algorithm had a mean VDR of 93.5% and a median VDT of 0.32 seconds. AI support was associated with a statistically significant increase in VDR from 54.9% to 73.0% and from 59.0% to 74.1% for trainees and experts, respectively. VDT significantly decreased from 7.21 sec to 5.09 sec for trainees and from 6.10 sec to 5.38 sec for experts in the AI-support group. False positive (FP) readings occurred in 4.5% of frames. FP structures were detected significantly shorter than true positives (0.71 sec vs. 5.99 sec). Conclusions AI improved VDR and VDT of trainees and experts in third space endoscopy and may reduce performance variability during training. Further research is needed to evaluate the clinical impact of this new technology. Y1 - 2024 U6 - https://doi.org/10.1055/s-0044-1782891 VL - 56 IS - S 02 SP - S93 PB - Thieme CY - Stuttgart ER - TY - GEN A1 - Zellmer, Stephan A1 - Rauber, David A1 - Probst, Andreas A1 - Weber, Tobias A1 - Braun, Georg A1 - Römmele, Christoph A1 - Nagl, Sandra A1 - Schnoy, Elisabeth A1 - Messmann, Helmut A1 - Ebigbo, Alanna A1 - Palm, Christoph T1 - Artificial intelligence as a tool in the detection of the papillary ostium during ERCP T2 - Endoscopy N2 - Aims Endoscopic retrograde cholangiopancreaticography (ERCP) is the gold standard in the diagnosis as well as treatment of diseases of the pancreatobiliary tract. However, it is technically complex and has a relatively high complication rate. In particular, cannulation of the papillary ostium remains challenging. The aim of this study is to examine whether a deep-learning algorithm can be used to detect the major duodenal papilla and in particular the papillary ostium reliably and could therefore be a valuable tool for inexperienced endoscopists, particularly in training situation. Methods We analyzed a total of 654 retrospectively collected images of 85 patients. Both the major duodenal papilla and the ostium were then segmented. Afterwards, a neural network was trained using a deep-learning algorithm. A 5-fold cross-validation was performed. Subsequently, we ran the algorithm on 5 prospectively collected videos of ERCPs. Results 5-fold cross-validation on the 654 labeled data resulted in an F1 value of 0.8007, a sensitivity of 0.8409 and a specificity of 0.9757 for the class papilla, and an F1 value of 0.5724, a sensitivity of 0.5456 and a specificity of 0.9966 for the class ostium. Regardless of the class, the average F1 value (class papilla and class ostium) was 0.6866, the sensitivity 0.6933 and the specificity 0.9861. In 100% of cases the AI-detected localization of the papillary ostium in the prospectively collected videos corresponded to the localization of the cannulation performed by the endoscopist. Conclusions In the present study, the neural network was able to identify the major duodenal papilla with a high sensitivity and high specificity. In detecting the papillary ostium, the sensitivity was notably lower. However, when used on videos, the AI was able to identify the location of the subsequent cannulation with 100% accuracy. In the future, the neural network will be trained with more data. Thus, a suitable tool for ERCP could be established, especially in the training situation. Y1 - 2024 U6 - https://doi.org/10.1055/s-0044-1783138 VL - 56 IS - S 02 SP - S198 PB - Thieme CY - Stuttgart ER - TY - GEN A1 - Scheppach, Markus W. A1 - Nunes, Danilo Weber A1 - Arizi, X. A1 - Rauber, David A1 - Probst, Andreas A1 - Nagl, Sandra A1 - Römmele, Christoph A1 - Meinikheim, Michael A1 - Palm, Christoph A1 - Messmann, Helmut A1 - Ebigbo, Alanna T1 - Procedural phase recognition in endoscopic submucosal dissection (ESD) using artificial intelligence (AI) T2 - Endoscopy N2 - Aims Recent evidence suggests the possibility of intraprocedural phase recognition in surgical operations as well as endoscopic interventions such as peroral endoscopic myotomy and endoscopic submucosal dissection (ESD) by AI-algorithms. The intricate measurement of intraprocedural phase distribution may deepen the understanding of the procedure. Furthermore, real-time quality assessment as well as automation of reporting may become possible. Therefore, we aimed to develop an AI-algorithm for intraprocedural phase recognition during ESD. Methods A training dataset of 364385 single images from 9 full-length ESD videos was compiled. Each frame was classified into one procedural phase. Phases included scope manipulation, marking, injection, application of electrical current and bleeding. Allocation of each frame was only possible to one category. This training dataset was used to train a Video Swin transformer to recognize the phases. Temporal information was included via logarithmic frame sampling. Validation was performed using two separate ESD videos with 29801 single frames. Results The validation yielded sensitivities of 97.81%, 97.83%, 95.53%, 85.01% and 87.55% for scope manipulation, marking, injection, electric application and bleeding, respectively. Specificities of 77.78%, 90.91%, 95.91%, 93.65% and 84.76% were measured for the same parameters. Conclusions The developed algorithm was able to classify full-length ESD videos on a frame-by-frame basis into the predefined classes with high sensitivities and specificities. Future research will aim at the development of quality metrics based on single-operator phase distribution. Y1 - 2024 U6 - https://doi.org/10.1055/s-0044-1783804 VL - 56 IS - S 02 SP - S439 PB - Thieme CY - Stuttgart ER - TY - GEN A1 - Scheppach, Markus W. A1 - Rauber, David A1 - Stallhofer, Johannes A1 - Muzalyova, Anna A1 - Otten, Vera A1 - Manzeneder, Carolin A1 - Schwamberger, Tanja A1 - Wanzl, Julia A1 - Schlottmann, Jakob A1 - Tadic, Vidan A1 - Probst, Andreas A1 - Schnoy, Elisabeth A1 - Römmele, Christoph A1 - Fleischmann, Carola A1 - Meinikheim, Michael A1 - Miller, Silvia A1 - Märkl, Bruno A1 - Palm, Christoph A1 - Messmann, Helmut A1 - Ebigbo, Alanna T1 - Performance comparison of a deep learning algorithm with endoscopists in the detection of duodenal villous atrophy (VA) T2 - Endoscopy N2 - Aims  VA is an endoscopic finding of celiac disease (CD), which can easily be missed if pretest probability is low. In this study, we aimed to develop an artificial intelligence (AI) algorithm for the detection of villous atrophy on endoscopic images. Methods 858 images from 182 patients with VA and 846 images from 323 patients with normal duodenal mucosa were used for training and internal validation of an AI algorithm (ResNet18). A separate dataset was used for external validation, as well as determination of detection performance of experts, trainees and trainees with AI support. According to the AI consultation distribution, images were stratified into “easy” and “difficult”. Results Internal validation showed 82%, 85% and 84% for sensitivity, specificity and accuracy. External validation showed 90%, 76% and 84%. The algorithm was significantly more sensitive and accurate than trainees, trainees with AI support and experts in endoscopy. AI support in trainees was associated with significantly improved performance. While all endoscopists showed significantly lower detection for “difficult” images, AI performance remained stable. Conclusions The algorithm outperformed trainees and experts in sensitivity and accuracy for VA detection. The significant improvement with AI support suggests a potential clinical benefit. Stable performance of the algorithm in “easy” and “difficult” test images may indicate an advantage in macroscopically challenging cases. Y1 - 2023 U6 - https://doi.org/10.1055/s-0043-1765421 VL - 55 IS - S02 PB - Thieme ER - TY - GEN A1 - Scheppach, Markus W. A1 - Weber Nunes, Danilo A1 - Arizi, X. A1 - Rauber, David A1 - Probst, Andreas A1 - Nagl, Sandra A1 - Römmele, Christoph A1 - Palm, Christoph A1 - Messmann, Helmut A1 - Ebigbo, Alanna T1 - Single frame workflow recognition during endoscopic submucosal dissection (ESD) using artificial intelligence (AI) T2 - Endoscopy N2 - Aims  Precise surgical phase recognition and evaluation may improve our understanding of complex endoscopic procedures. Furthermore, quality control measurements and endoscopy training could benefit from objective descriptions of surgical phase distributions. Therefore, we aimed to develop an artificial intelligence algorithm for frame-by-frame operational phase recognition during endoscopic submucosal dissection (ESD). Methods  Full length ESD-videos from 31 patients comprising 6.297.782 single images were collected retrospectively. Videos were annotated on a frame-by-frame basis for the operational macro-phases diagnostics, marking, injection, dissection and bleeding. Further subphases were the application of electrical current, visible injection of fluid into the submucosal space and scope manipulation, leading to 11 phases in total. 4.975.699 frames (21 patients) were used for training of a video swin transformer using uniform frame sampling for temporal information. Hyperparameter tuning was performed with 897.325 further frames (6 patients), while 424.758 frames (4 patients) were used for validation. Results  The overall F1 scores on the test dataset for the macro-phases and all 11 phases were 0.96 and 0.90, respectively. The recall values for diagnostics, marking, injection, dissection and bleeding were 1.00, 1.00, 0.95, 0.96 and 0.93, respectively. Conclusions  The algorithm classified operational phases during ESD with high accuracy. A precise evaluation of phase distribution may allow for the development of objective quality metrics for quality control and training. Y1 - 2025 U6 - https://doi.org/10.1055/s-0045-1806324 VL - 57 IS - S 02 SP - S511 PB - Thieme CY - Stuttgart ER - TY - JOUR A1 - Souza Jr., Luis Antonio de A1 - Mendel, Robert A1 - Strasser, Sophia A1 - Ebigbo, Alanna A1 - Probst, Andreas A1 - Messmann, Helmut A1 - Papa, João Paulo A1 - Palm, Christoph T1 - Convolutional Neural Networks for the evaluation of cancer in Barrett’s esophagus: Explainable AI to lighten up the black-box JF - Computers in Biology and Medicine N2 - Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their level of accountability and transparency must be provided in such evaluations. The reliability related to machine learning predictions must be explained and interpreted, especially if diagnosis support is addressed. For this task, the black-box nature of deep learning techniques must be lightened up to transfer its promising results into clinical practice. Hence, we aim to investigate the use of explainable artificial intelligence techniques to quantitatively highlight discriminative regions during the classification of earlycancerous tissues in Barrett’s esophagus-diagnosed patients. Four Convolutional Neural Network models (AlexNet, SqueezeNet, ResNet50, and VGG16) were analyzed using five different interpretation techniques (saliency, guided backpropagation, integrated gradients, input × gradients, and DeepLIFT) to compare their agreement with experts’ previous annotations of cancerous tissue. We could show that saliency attributes match best with the manual experts’ delineations. Moreover, there is moderate to high correlation between the sensitivity of a model and the human-and-computer agreement. The results also lightened that the higher the model’s sensitivity, the stronger the correlation of human and computational segmentation agreement. We observed a relevant relation between computational learning and experts’ insights, demonstrating how human knowledge may influence the correct computational learning. KW - Deep Learning KW - Künstliche Intelligenz KW - Computerunterstützte Medizin KW - Barrett's esophagus KW - Adenocarcinoma KW - Machine learning KW - Explainable artificial intelligence KW - Computer-aided diagnosis Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:898-opus4-20126 SN - 0010-4825 VL - 135 SP - 1 EP - 14 PB - Elsevier ER - TY - GEN A1 - Ebigbo, Alanna A1 - Mendel, Robert A1 - Probst, Andreas A1 - Manzeneder, Johannes A1 - Souza Jr., Luis Antonio de A1 - Papa, João Paulo A1 - Palm, Christoph A1 - Messmann, Helmut T1 - Artificial Intelligence in Early Barrett's Cancer: The Segmentation Task T2 - Endoscopy N2 - Aims: The delineation of outer margins of early Barrett's cancer can be challenging even for experienced endoscopists. Artificial intelligence (AI) could assist endoscopists faced with this task. As of date, there is very limited experience in this domain. In this study, we demonstrate the measure of overlap (Dice coefficient = D) between highly experienced Barrett endoscopists and an AI system in the delineation of cancer margins (segmentation task). Methods: An AI system with a deep convolutional neural network (CNN) was trained and tested on high-definition endoscopic images of early Barrett's cancer (n = 33) and normal Barrett's mucosa (n = 41). The reference standard for the segmentation task were the manual delineations of tumor margins by three highly experienced Barrett endoscopists. Training of the AI system included patch generation, patch augmentation and adjustment of the CNN weights. Then, the segmentation results from patch classification and thresholding of the class probabilities. Segmentation results were evaluated using the Dice coefficient (D). Results: The Dice coefficient (D) which can range between 0 (no overlap) and 1 (complete overlap) was computed only for images correctly classified by the AI-system as cancerous. At a threshold of t = 0.5, a mean value of D = 0.72 was computed. Conclusions: AI with CNN performed reasonably well in the segmentation of the tumor region in Barrett's cancer, at least when compared with expert Barrett's endoscopists. AI holds a lot of promise as a tool for better visualization of tumor margins but may need further improvement and enhancement especially in real-time settings. KW - Speiseröhrenkrankheit KW - Maschinelles Lernen KW - Barrett's esphagus KW - Deep Learning KW - Segmentation Y1 - 2019 U6 - https://doi.org/10.1055/s-0039-1681187 VL - 51 IS - 04 SP - 6 PB - Georg Thieme Verlag CY - Stuttgart ER - TY - CHAP A1 - Souza Jr., Luis Antonio de A1 - Ebigbo, Alanna A1 - Probst, Andreas A1 - Messmann, Helmut A1 - Papa, João Paulo A1 - Mendel, Robert A1 - Palm, Christoph T1 - Barrett's Esophagus Identification Using Color Co-occurrence Matrices T2 - 31st SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI), Parana, 2018 N2 - In this work, we propose the use of single channel Color Co-occurrence Matrices for texture description of Barrett’sEsophagus (BE)and adenocarcinoma images. Further classification using supervised learning techniques, such as Optimum-Path Forest (OPF), Support Vector Machines with Radial Basisunction (SVM-RBF) and Bayesian classifier supports the contextof automatic BE and adenocarcinoma diagnosis. We validated three approaches of classification based on patches, patients and images in two datasets (MICCAI 2015 and Augsburg) using the color-and-texture descriptors and the machine learning techniques. Concerning MICCAI 2015 dataset, the best results were obtained using the blue channel for the descriptors and the supervised OPF for classification purposes in the patch-based approach, with sensitivity nearly to 73% for positive adenocarcinoma identification and specificity close to 77% for BE (non-cancerous) patch classification. Regarding the Augsburg dataset, the most accurate results were also obtained using both OPF classifier and blue channel descriptor for the feature extraction, with sensitivity close to 67% and specificity around to76%. Our work highlights new advances in the related research area and provides a promising technique that combines color and texture information, allied to three different approaches of dataset pre-processing aiming to configure robust scenarios for the classification step. KW - Barrett’s Esophagus KW - Co-occurrence Matrices KW - Machine learning KW - Texture Analysis Y1 - 2018 U6 - https://doi.org/10.1109/SIBGRAPI.2018.00028 SP - 166 EP - 173 ER - TY - JOUR A1 - Ebigbo, Alanna A1 - Mendel, Robert A1 - Probst, Andreas A1 - Manzeneder, Johannes A1 - Prinz, Friederike A1 - Souza Jr., Luis Antonio de A1 - Papa, João Paulo A1 - Palm, Christoph A1 - Messmann, Helmut T1 - Real-time use of artificial intelligence in the evaluation of cancer in Barrett’s oesophagus JF - Gut N2 - Based on previous work by our group with manual annotation of visible Barrett oesophagus (BE) cancer images, a real-time deep learning artificial intelligence (AI) system was developed. While an expert endoscopist conducts the endoscopic assessment of BE, our AI system captures random images from the real-time camera livestream and provides a global prediction (classification), as well as a dense prediction (segmentation) differentiating accurately between normal BE and early oesophageal adenocarcinoma (EAC). The AI system showed an accuracy of 89.9% on 14 cases with neoplastic BE. KW - Speiseröhrenkrankheit KW - Diagnose KW - Maschinelles Lernen KW - Barrett's esophagus KW - Deep learning KW - real-time Y1 - 2020 U6 - https://doi.org/10.1136/gutjnl-2019-319460 VL - 69 IS - 4 SP - 615 EP - 616 PB - BMJ CY - London ER - TY - JOUR A1 - Ebigbo, Alanna A1 - Mendel, Robert A1 - Rückert, Tobias A1 - Schuster, Laurin A1 - Probst, Andreas A1 - Manzeneder, Johannes A1 - Prinz, Friederike A1 - Mende, Matthias A1 - Steinbrück, Ingo A1 - Faiss, Siegbert A1 - Rauber, David A1 - Souza Jr., Luis Antonio de A1 - Papa, João Paulo A1 - Deprez, Pierre A1 - Oyama, Tsuneo A1 - Takahashi, Akiko A1 - Seewald, Stefan A1 - Sharma, Prateek A1 - Byrne, Michael F. A1 - Palm, Christoph A1 - Messmann, Helmut T1 - Endoscopic prediction of submucosal invasion in Barrett’s cancer with the use of Artificial Intelligence: A pilot Study JF - Endoscopy N2 - Background and aims: The accurate differentiation between T1a and T1b Barrett’s cancer has both therapeutic and prognostic implications but is challenging even for experienced physicians. We trained an Artificial Intelligence (AI) system on the basis of deep artificial neural networks (deep learning) to differentiate between T1a and T1b Barrett’s cancer white-light images. Methods: Endoscopic images from three tertiary care centres in Germany were collected retrospectively. A deep learning system was trained and tested using the principles of cross-validation. A total of 230 white-light endoscopic images (108 T1a and 122 T1b) was evaluated with the AI-system. For comparison, the images were also classified by experts specialized in endoscopic diagnosis and treatment of Barrett’s cancer. Results: The sensitivity, specificity, F1 and accuracy of the AI-system in the differentiation between T1a and T1b cancer lesions was 0.77, 0.64, 0.73 and 0.71, respectively. There was no statistically significant difference between the performance of the AI-system and that of human experts with sensitivity, specificity, F1 and accuracy of 0.63, 0.78, 0.67 and 0.70 respectively. Conclusion: This pilot study demonstrates the first multicenter application of an AI-based system in the prediction of submucosal invasion in endoscopic images of Barrett’s cancer. AI scored equal to international experts in the field, but more work is necessary to improve the system and apply it to video sequences and in a real-life setting. Nevertheless, the correct prediction of submucosal invasion in Barret´s cancer remains challenging for both experts and AI. KW - Maschinelles Lernen KW - Neuronales Netz KW - Speiseröhrenkrebs KW - Diagnose KW - Artificial Intelligence KW - Machine learning KW - Adenocarcinoma KW - Barrett’s cancer KW - submucosal invasion Y1 - 2021 U6 - https://doi.org/10.1055/a-1311-8570 VL - 53 IS - 09 SP - 878 EP - 883 PB - Thieme CY - Stuttgart ER - TY - JOUR A1 - Souza Jr., Luis Antonio de A1 - Passos, Leandro A. A1 - Mendel, Robert A1 - Ebigbo, Alanna A1 - Probst, Andreas A1 - Messmann, Helmut A1 - Palm, Christoph A1 - Papa, João Paulo T1 - Assisting Barrett's esophagus identification using endoscopic data augmentation based on Generative Adversarial Networks JF - Computers in Biology and Medicine N2 - Barrett's esophagus figured a swift rise in the number of cases in the past years. Although traditional diagnosis methods offered a vital role in early-stage treatment, they are generally time- and resource-consuming. In this context, computer-aided approaches for automatic diagnosis emerged in the literature since early detection is intrinsically related to remission probabilities. However, they still suffer from drawbacks because of the lack of available data for machine learning purposes, thus implying reduced recognition rates. This work introduces Generative Adversarial Networks to generate high-quality endoscopic images, thereby identifying Barrett's esophagus and adenocarcinoma more precisely. Further, Convolution Neural Networks are used for feature extraction and classification purposes. The proposed approach is validated over two datasets of endoscopic images, with the experiments conducted over the full and patch-split images. The application of Deep Convolutional Generative Adversarial Networks for the data augmentation step and LeNet-5 and AlexNet for the classification step allowed us to validate the proposed methodology over an extensive set of datasets (based on original and augmented sets), reaching results of 90% of accuracy for the patch-based approach and 85% for the image-based approach. Both results are based on augmented datasets and are statistically different from the ones obtained in the original datasets of the same kind. Moreover, the impact of data augmentation was evaluated in the context of image description and classification, and the results obtained using synthetic images outperformed the ones over the original datasets, as well as other recent approaches from the literature. Such results suggest promising insights related to the importance of proper data for the accurate classification concerning computer-assisted Barrett's esophagus and adenocarcinoma detection. KW - Maschinelles Lernen KW - Barrett's esophagus KW - Machine learning KW - Adenocarcinoma KW - Generative adversarial networks KW - Neuronales Netz KW - Adenocarcinom KW - Speiseröhrenkrebs KW - Diagnose Y1 - 2020 U6 - https://doi.org/10.1016/j.compbiomed.2020.104029 VL - 126 IS - November PB - Elsevier ER - TY - CHAP A1 - Souza Jr., Luis Antonio de A1 - Passos, Leandro A. A1 - Mendel, Robert A1 - Ebigbo, Alanna A1 - Probst, Andreas A1 - Messmann, Helmut A1 - Palm, Christoph A1 - Papa, João Paulo T1 - Fine-tuning Generative Adversarial Networks using Metaheuristics BT - A Case Study on Barrett's Esophagus Identification T2 - Bildverarbeitung für die Medizin 2021. Proceedings, German Workshop on Medical Image Computing, Regensburg, March 7-9, 2021 N2 - Barrett's esophagus denotes a disorder in the digestive system that affects the esophagus' mucosal cells, causing reflux, and showing potential convergence to esophageal adenocarcinoma if not treated in initial stages. Thus, fast and reliable computer-aided diagnosis becomes considerably welcome. Nevertheless, such approaches usually suffer from imbalanced datasets, which can be addressed through Generative Adversarial Networks (GANs). Such techniques generate realistic images based on observed samples, even though at the cost of a proper selection of its hyperparameters. Many works employed a class of nature-inspired algorithms called metaheuristics to tackle the problem considering distinct deep learning approaches. Therefore, this paper's main contribution is to introduce metaheuristic techniques to fine-tune GANs in the context of Barrett's esophagus identification, as well as to investigate the feasibility of generating high-quality synthetic images for early-cancer assisted identification. KW - Endoskopie KW - Computerunterstützte Medizin KW - Deep Learning Y1 - 2021 SN - 978-3-658-33197-9 U6 - https://doi.org/10.1007/978-3-658-33198-6_50 SP - 205 EP - 210 PB - Springer Vieweg CY - Wiesbaden ER - TY - JOUR A1 - Roser, David A1 - Meinikheim, Michael A1 - Muzalyova, Anna A1 - Mendel, Robert A1 - Palm, Christoph A1 - Probst, Andreas A1 - Nagl, Sandra A1 - Scheppach, Markus W. A1 - Römmele, Christoph A1 - Schnoy, Elisabeth A1 - Parsa, Nasim A1 - Byrne, Michael F. A1 - Messmann, Helmut A1 - Ebigbo, Alanna T1 - Artificial intelligence-assisted endoscopy and examiner confidence : a study on human–artificial intelligence interaction in Barrett's Esophagus (With Video) JF - DEN Open N2 - Objective Despite high stand-alone performance, studies demonstrate that artificial intelligence (AI)-supported endoscopic diagnostics often fall short in clinical applications due to human-AI interaction factors. This video-based trial on Barrett's esophagus aimed to investigate how examiner behavior, their levels of confidence, and system usability influence the diagnostic outcomes of AI-assisted endoscopy. Methods The present analysis employed data from a multicenter randomized controlled tandem video trial involving 22 endoscopists with varying degrees of expertise. Participants were tasked with evaluating a set of 96 endoscopic videos of Barrett's esophagus in two distinct rounds, with and without AI assistance. Diagnostic confidence levels were recorded, and decision changes were categorized according to the AI prediction. Additional surveys assessed user experience and system usability ratings. Results AI assistance significantly increased examiner confidence levels (p < 0.001) and accuracy. Withdrawing AI assistance decreased confidence (p < 0.001), but not accuracy. Experts consistently reported higher confidence than non-experts (p < 0.001), regardless of performance. Despite improved confidence, correct AI guidance was disregarded in 16% of all cases, and 9% of initially correct diagnoses were changed to incorrect ones. Overreliance on AI, algorithm aversion, and uncertainty in AI predictions were identified as key factors influencing outcomes. The System Usability Scale questionnaire scores indicated good to excellent usability, with non-experts scoring 73.5 and experts 85.6. Conclusions Our findings highlight the pivotal function of examiner behavior in AI-assisted endoscopy. To fully realize the benefits of AI, implementing explainable AI, improving user interfaces, and providing targeted training are essential. Addressing these factors could enhance diagnostic accuracy and confidence in clinical practice. Y1 - 2025 U6 - https://doi.org/10.1002/deo2.70150 VL - 6 IS - 1 PB - Wiley ER - TY - GEN A1 - Meinikheim, Michael A1 - Mendel, Robert A1 - Probst, Andreas A1 - Scheppach, Markus W. A1 - Schnoy, Elisabeth A1 - Nagl, Sandra A1 - Römmele, Christoph A1 - Prinz, Friederike A1 - Schlottmann, Jakob A1 - Golger, Daniela A1 - Palm, Christoph A1 - Messmann, Helmut A1 - Ebigbo, Alanna T1 - AI-assisted detection and characterization of early Barrett's neoplasia: Results of an Interim analysis T2 - Endoscopy N2 - Aims  Evaluation of the add-on effect an artificial intelligence (AI) based clinical decision support system has on the performance of endoscopists with different degrees of expertise in the field of Barrett's esophagus (BE) and Barrett's esophagus-related neoplasia (BERN). Methods  The support system is based on a multi-task deep learning model trained to solve a segmentation and several classification tasks. The training approach represents an extension of the ECMT semi-supervised learning algorithm. The complete system evaluates a decision tree between estimated motion, classification, segmentation, and temporal constraints, to decide when and how the prediction is highlighted to the observer. In our current study, ninety-six video cases of patients with BE and BERN were prospectively collected and assessed by Barrett's specialists and non-specialists. All video cases were evaluated twice – with and without AI assistance. The order of appearance, either with or without AI support, was assigned randomly. Participants were asked to detect and characterize regions of dysplasia or early neoplasia within the video sequences. Results  Standalone sensitivity, specificity, and accuracy of the AI system were 92.16%, 68.89%, and 81.25%, respectively. Mean sensitivity, specificity, and accuracy of expert endoscopists without AI support were 83,33%, 58,20%, and 71,48 %, respectively. Gastroenterologists without Barrett's expertise but with AI support had a comparable performance with a mean sensitivity, specificity, and accuracy of 76,63%, 65,35%, and 71,36%, respectively. Conclusions  Non-Barrett's experts with AI support had a similar performance as experts in a video-based study. Y1 - 2023 U6 - https://doi.org/10.1055/s-0043-1765437 VL - 55 IS - S02 PB - Thieme ER - TY - JOUR A1 - Scheppach, Markus W. A1 - Mendel, Robert A1 - Muzalyova, Anna A1 - Rauber, David A1 - Probst, Andreas A1 - Nagl, Sandra A1 - Römmele, Christoph A1 - Yip, Hon Chi A1 - Lau, Louis Ho Shing A1 - Gölder, Stefan Karl A1 - Schmidt, Arthur A1 - Kouladouros, Konstantinos A1 - Abdelhafez, Mohamed A1 - Walter, Benjamin M. A1 - Meinikheim, Michael A1 - Chiu, Philip Wai Yan A1 - Palm, Christoph A1 - Messmann, Helmut A1 - Ebigbo, Alanna T1 - Artificial intelligence improves submucosal vessel detection during third space endoscopy JF - Endoscopy N2 - Background and study aims: While artificial intelligence (AI) shows high potential in decision support for diagnostic gastrointestinal endoscopy, its role in therapeutic endoscopy remains unclear. Third space endoscopic procedures pose the risk of intraprocedural bleeding. Therefore, we aimed to develop an AI algorithm for intraprocedural blood vessel detection. Patients and Methods: Using a test dataset with 101 standardized video clips containing 200 predefined submucosal blood vessels, 19 endoscopists were evaluated for the vessel detection rate (VDR) and time (VDT) with and without support of an AI algorithm. Test subjects were grouped according to experience in ESD. Results: With AI support, endoscopists VDR increased from 56.4% [CI 54.1–58.6] to 72.4% [CI 70.3–74.4]. Endoscopists‘ VDT dropped from 6.7sec [CI 6.2-7.1] to 5.2sec [CI 4.8-5.7]. False positive (FP) readings appeared in 4.5% of frames and were marked significantly shorter than true positives (6.0sec [CI 5.28-6.70] vs. 0.7sec [CI 0.55-0.87]). Conclusions: AI improved the vessel detection rate and time of endoscopists during third space endoscopy. While these data need to be corroborated by clinical trials, AI may prove to be an invaluable tool for the improvement of endoscopic interventions. KW - Artificial Intelligence KW - Third Space Endoscopy Y1 - 2025 U6 - https://doi.org/10.1055/a-2534-1164 PB - Thieme CY - Stuttgart ER - TY - GEN A1 - Ebigbo, Alanna A1 - Mendel, Robert A1 - Tziatzios, Georgios A1 - Probst, Andreas A1 - Palm, Christoph A1 - Messmann, Helmut T1 - Real-Time Diagnosis of an Early Barrett's Carcinoma using Artificial Intelligence (AI) - Video Case Demonstration T2 - Endoscopy N2 - Introduction We present a clinical case showing the real-time detection, characterization and delineation of an early Barrett’s cancer using AI. Patients and methods A 70-year old patient with a long-segment Barrett’s esophagus (C5M7) was assessed with an AI algorithm. Results The AI system detected a 10 mm focal lesion and AI characterization predicted cancer with a probability of >90%. After ESD resection, histopathology showed mucosal adenocarcinoma (T1a (m), R0) confirming AI diagnosis. Conclusion We demonstrate the real-time AI detection, characterization and delineation of a small and early mucosal Barrett’s cancer. KW - Artificial Intelligence KW - Barrett's Carcinoma KW - Speiseröhrenkrebs KW - Künstliche Intelligenz KW - Diagnose Y1 - 2020 U6 - https://doi.org/10.1055/s-0040-1704075 VL - 52 IS - S 01 PB - Thieme ER - TY - JOUR A1 - Passos, Leandro A. A1 - Souza Jr., Luis Antonio de A1 - Mendel, Robert A1 - Ebigbo, Alanna A1 - Probst, Andreas A1 - Messmann, Helmut A1 - Palm, Christoph A1 - Papa, João Paulo T1 - Barrett's esophagus analysis using infinity Restricted Boltzmann Machines JF - Journal of Visual Communication and Image Representation N2 - The number of patients with Barret’s esophagus (BE) has increased in the last decades. Considering the dangerousness of the disease and its evolution to adenocarcinoma, an early diagnosis of BE may provide a high probability of cancer remission. However, limitations regarding traditional methods of detection and management of BE demand alternative solutions. As such, computer-aided tools have been recently used to assist in this problem, but the challenge still persists. To manage the problem, we introduce the infinity Restricted Boltzmann Machines (iRBMs) to the task of automatic identification of Barrett’s esophagus from endoscopic images of the lower esophagus. Moreover, since iRBM requires a proper selection of its meta-parameters, we also present a discriminative iRBM fine-tuning using six meta-heuristic optimization techniques. We showed that iRBMs are suitable for the context since it provides competitive results, as well as the meta-heuristic techniques showed to be appropriate for such task. KW - Speiseröhrenkrankheit KW - Diagnose KW - Boltzmann-Maschine KW - Barrett’s esophagus KW - Infinity Restricted Boltzmann Machines KW - Meta-heuristics KW - Deep learning KW - Metaheuristik KW - Maschinelles Lernen Y1 - 2019 U6 - https://doi.org/10.1016/j.jvcir.2019.01.043 VL - 59 SP - 475 EP - 485 PB - Elsevier ER - TY - GEN A1 - Scheppach, Markus W. A1 - Weber Nunes, Danilo A1 - Rauber, David A1 - Arizi, X. A1 - Probst, Andreas A1 - Nagl, Sandra A1 - Römmele, Christoph A1 - Ebigbo, Alanna A1 - Palm, Christoph A1 - Messmann, Helmut T1 - Künstliche Intelligenz-basierte Erkennung von interventionellen Phasen bei der endoskopischen Submukosadissektion T2 - Zeitschrift für Gastroenterologie N2 - Einleitung: Die endoskopische Submukosadissektion (ESD) ist ein komplexes endoskopisches Verfahren, das technische Expertise erfordert. Objektive Methoden zur Analyse von interventionellen Abläufen bei ESD könnten für Qualitätssicherung und Ausbildung, wie auch eine automatische Befunderstellung von Nutzen sein. Ziele: In dieser Studie wurde ein KI-Algorithmus für die Erkennung und Klassifizierung der interventionellen Phasen der ESD entwickelt, um die technische Basis für eine standardisierte Leistungsbewertung und automatische Befunderstellung zu schaffen. Methodik: Vollständige ESD-Videoaufnahmen von 49 Patienten wurden retrospektiv zusammengestellt. Der Datensatz umfasste 6.390.151 Einzelbilder, die alle für die folgenden interventionellen Phasen annotiert wurden: Diagnostik, Markierung, Injektion, Dissektion und Hämostase. 3.973.712 Bilder (28 Patienten) wurden für das Training eines Video-Swin-Transformers genutzt. Dabei wurde temporale Information durch standardisierte BIldextraktion in festgelegten zeitlichen Abständen zum analysierten Bild inkorporiert. 2.416.439 separate Bilder (21 Patienten) wurden für eine interne Validierung genutzt. Ergebnis: Bei der internen Evaluation erreichte das System insgesamt einen F1-Wert von 0,88. Es wurden F1-Werte von 0,99, 0,89, 0,89, 0,91 und 0,52 für Diagnostik, Markierung, Injektion, Dissektion bzw. Blutungsmanagement gemessen. Die Sensitivitäten für dieselben Parameter betrugen 1,00, 0,80, 0,94, 0,89 und 0,67, die Spezifitäten lagen bei 1,00, 1,00, 0,98, 0,88 und 0,93. Positive prädiktive Werte wurden mit 0,98, 1,00, 0,85, 0,94 und 0,43 gemessen. Schlussfolgerung: In dieser vorläufigen Studie zeigte ein KI-Algorithmus eine hohe Leistungsfähigkeit für die Einzelbild-Erkennung von Verfahrensphasen während der ESD. Die vergleichsweise niedrige Leistung für die Blutungsphase wurde auf das seltene Auftreten von Blutungsepisoden im Trainingsdatensatz zurückgeführt, der zu diesem Zeitpunkt nur Videos in voller Länge umfasste. Die zukünftige Entwicklung des Algorithmus wird sich auf die Reduzierung von Klassenungleichgewichten durch selektive Annotationsprotokolle konzentrieren. Y1 - 2025 U6 - https://doi.org/10.1055/s-0045-1811093 VL - 63 IS - 08 SP - e612 EP - e613 PB - Thieme CY - Stuttgart ER - TY - GEN A1 - Scheppach, Markus W. A1 - Rauber, David A1 - Zingler, C. A1 - Weber Nunes, Danilo A1 - Probst, Andreas A1 - Römmele, Christoph A1 - Nagl, Sandra A1 - Ebigbo, Alanna A1 - Palm, Christoph A1 - Messmann, Helmut T1 - Instrumentenerkennung während der endoskopischen Submukosadissektion mittels künstlicher Intelligenz T2 - Zeitschrift für Gastroenterologie N2 - Einleitung: Die endoskopische Submukosadissektion (ESD) ist eine komplexe Technik zur Resektion gastrointestinaler Frühneoplasien. Dabei werden für die verschiedenen Schritte der Intervention spezifische endoskopische Instrumente verwendet. Die präzise und automatische Erkennung und Abgrenzung der verwendeten Instrumente (Injektionsnadeln, elektrochirurgische Messer mit unterschiedlichen Konfigurationen, hämostatische Zangen) könnte wertvolle Informationen über den Fortschritt und die Verfahrensmerkmale der ESD liefern und eine automatische standardisierte Berichterstattung ermöglichen. Ziele: Ziel dieser Studie war die Entwicklung eines KI-Algorithmus zur Erkennung und Delineation von endoskopischen Instrumenten bei der ESD. Methodik: 17 ESD-Videos (9×rektal, 5×ösophageal, 3×gastrisch) wurden retrospektiv zusammengestellt. Auf 8530 Einzelbilder dieser Videos wurden durch 2 Studienmitarbeiter die folgenden Klassen eingezeichnet: Hakenmesser – Spitze, Hakenmesser – Katheter, Nadelmesser – Spitze und – Katheter, Injektionsnadel -Spitze und – Katheter sowie hämostatische Zange – Spitze und – Katheter. Der annotierte Datensatz wurde zum Training eines DeepLabV3+-Deep-Learning-Algorithmus mit ConvNeXt-Backbone zur Erkennung und Abgrenzung der genannten Klassen verwendet. Die Evaluation erfolgte durch 5-fache interne Kreuzvalidierung. Ergebnis: Die Validierung auf Einzelpixelbasis ergab insgesamt einen F1-Score von 0,80, eine Sensitivität von 0,81 und eine Spezifität von 1,00. Es wurden F1-Scores von 1,00, 0,97, 0,80, 0,98, 0,85, 0,97, 0,80, 0,51 bzw. 0,85 für die Klassen Hakenmesser – Katheter und – Spitze, Nadelmesser – Katheter und – Spitze, Injektionsnadel – Katheter und – Spitze, hämostatische Zange – Katheter und – Spitze gemessen. Schlussfolgerung: In dieser Studie wurden die wichtigsten endoskopischen Instrumente, die während der ESD verwendet werden, mit hoher Genauigkeit erkannt. Die geringere Leistung bei der hämostatische Zange – Katheter kann auf die Unterrepräsentation dieser Klassen in den Trainingsdaten zurückgeführt werden. Zukünftige Studien werden sich auf die Erweiterung der Instrumentenklassen sowie auf die Ausbalancierung der Trainingsdaten konzentrieren. Y1 - 2025 U6 - https://doi.org/10.1055/s-0045-1811092 VL - 63 IS - 8 PB - Thieme ER -