@inproceedings{FranzKatzkyNeumannetal., author = {Franz, Daniela and Katzky, Uwe and Neumann, Sabine and Perret, Jerome and Hofer, Mathias and Huber, Michaela and Schmitt-R{\"u}th, Stephanie and Haug, Sonja and Weber, Karsten and Prinzen, Martin and Palm, Christoph and Wittenberg, Thomas}, title = {Haptisches Lernen f{\"u}r Cochlea Implantationen}, series = {15. Jahrestagung der Deutschen Gesellschaft f{\"u}r Computer- und Roboterassistierte Chirurgie (CURAC2016), Tagungsband, 2016, Bern, 29.09. - 01.10.}, booktitle = {15. Jahrestagung der Deutschen Gesellschaft f{\"u}r Computer- und Roboterassistierte Chirurgie (CURAC2016), Tagungsband, 2016, Bern, 29.09. - 01.10.}, pages = {21 -- 26}, abstract = {Die Implantation eines Cochlea Implantates ben{\"o}tigt einen chirurgischen Zugang im Felsenbein und durch die Paukenh{\"o}hle des Patienten. Der Chirurg hat eine eingeschr{\"a}nkte Sicht im Operationsgebiet, die weiterhin viele Risikostrukturen enth{\"a}lt. Um eine Cochlea Implantation sicher und fehlerfrei durchzuf{\"u}hren, ist eine umfangreiche theoretische und praktische (teilweise berufsbegleitende) Fortbildung sowie langj{\"a}hrige Erfahrung notwendig. Unter Nutzung von realen klinischen CT/MRT Daten von Innen- und Mittelohr und der interaktiven Segmentierung der darin abgebildeten Strukturen (Nerven, Cochlea, Geh{\"o}rkn{\"o}chelchen,...) wird im HaptiVisT Projekt ein haptisch-visuelles Trainingssystem f{\"u}r die Implantation von Innen- und Mittelohr-Implantaten realisiert, das als sog. „Serious Game" mit immersiver Didaktik gestaltet wird. Die Evaluierung des Demonstrators hinsichtlich Zweckm{\"a}ßigkeit erfolgt prozessbegleitend und ergebnisorientiert, um m{\"o}gliche technische oder didaktische Fehler vor Fertigstellung des Systems aufzudecken. Drei zeitlich versetzte Evaluationen fokussieren dabei chirurgisch-fachliche, didaktische sowie haptisch-ergonomische Akzeptanzkriterien.}, subject = {Cochlea-Implantat}, language = {de} } @inproceedings{SouzaJrHookPapaetal., author = {Souza Jr., Luis Antonio de and Hook, Christian and Papa, Jo{\~a}o Paulo and Palm, Christoph}, title = {Barrett's Esophagus Analysis Using SURF Features}, series = {Bildverarbeitung f{\"u}r die Medizin 2017; Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 12. bis 14. M{\"a}rz 2017 in Heidelberg}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2017; Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 12. bis 14. M{\"a}rz 2017 in Heidelberg}, publisher = {Springer}, address = {Berlin}, doi = {10.1007/978-3-662-54345-0_34}, pages = {141 -- 146}, abstract = {The development of adenocarcinoma in Barrett's esophagus is difficult to detect by endoscopic surveillance of patients with signs of dysplasia. Computer assisted diagnosis of endoscopic images (CAD) could therefore be most helpful in the demarcation and classification of neoplastic lesions. In this study we tested the feasibility of a CAD method based on Speeded up Robust Feature Detection (SURF). A given database containing 100 images from 39 patients served as benchmark for feature based classification models. Half of the images had previously been diagnosed by five clinical experts as being "cancerous", the other half as "non-cancerous". Cancerous image regions had been visibly delineated (masked) by the clinicians. SURF features acquired from full images as well as from masked areas were utilized for the supervised training and testing of an SVM classifier. The predictive accuracy of the developed CAD system is illustrated by sensitivity and specificity values. The results based on full image matching where 0.78 (sensitivity) and 0.82 (specificity) were achieved, while the masked region approach generated results of 0.90 and 0.95, respectively.}, subject = {Speiser{\"o}hrenkrankheit}, language = {en} } @inproceedings{MendelEbigboProbstetal., author = {Mendel, Robert and Ebigbo, Alanna and Probst, Andreas and Messmann, Helmut and Palm, Christoph}, title = {Barrett's Esophagus Analysis Using Convolutional Neural Networks}, series = {Bildverarbeitung f{\"u}r die Medizin 2017; Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 12. bis 14. M{\"a}rz 2017 in Heidelberg}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2017; Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 12. bis 14. M{\"a}rz 2017 in Heidelberg}, publisher = {Springer}, address = {Berlin}, doi = {10.1007/978-3-662-54345-0_23}, pages = {80 -- 85}, abstract = {We propose an automatic approach for early detection of adenocarcinoma in the esophagus. High-definition endoscopic images (50 cancer, 50 Barrett) are partitioned into a dataset containing approximately equal amounts of patches showing cancerous and non-cancerous regions. A deep convolutional neural network is adapted to the data using a transfer learning approach. The final classification of an image is determined by at least one patch, for which the probability being a cancer patch exceeds a given threshold. The model was evaluated with leave one patient out cross-validation. With sensitivity and specificity of 0.94 and 0.88, respectively, our findings improve recently published results on the same image data base considerably. Furthermore, the visualization of the class probabilities of each individual patch indicates, that our approach might be extensible to the segmentation domain.}, subject = {Speiser{\"o}hrenkrebs}, language = {en} } @inproceedings{MaierHaugHuberetal., author = {Maier, Johannes and Haug, Sonja and Huber, Michaela and Katzky, Uwe and Neumann, Sabine and Perret, J{\´e}r{\^o}me and Prinzen, Martin and Weber, Karsten and Wittenberg, Thomas and W{\"o}hl, Rebecca and Scorna, Ulrike and Palm, Christoph}, title = {Development of a haptic and visual assisted training simulation concept for complex bone drilling in minimally invasive hand surgery}, series = {CARS Conference, 5.10.-7.10.2017}, booktitle = {CARS Conference, 5.10.-7.10.2017}, language = {en} } @inproceedings{MetzlerAachPalmetal., author = {Metzler, V. and Aach, T. and Palm, Christoph and Lehmann, Thomas M.}, title = {Texture Classification of Graylevel Images by Multiscale Cross-Co-Occurrence Matrices}, series = {Proceedings 15th International Conference on Pattern Recognition (ICPR-2000)}, booktitle = {Proceedings 15th International Conference on Pattern Recognition (ICPR-2000)}, doi = {10.1109/ICPR.2000.906133}, pages = {549 -- 552}, abstract = {Local gray level dependencies of natural images can be modelled by means of co-occurrence matrices containing joint probabilities of gray-level pairs. Texture, however, is a resolution-dependent phenomenon and hence, classification depends on the chosen scale. Since there is no optimal scale for all textures we employ a multiscale approach that acquires textural features at several scales. Thus linear and nonlinear scale-spaces are analyzed by multiscale co-occurrence matrices that describe the statistical behavior of a texture in scale-space. Classification is then performed on the basis of texture features taken from the individual scale with the highest discriminatory power. By considering cross-scale occurrences of gray level pairs, the impact of filters on the feature is described and used for classification of natural textures. This novel method was found to improve classification rates of the common co-occurrence matrix approach on standard textures significantly.}, language = {en} } @inproceedings{WeberNunesRauberPalm, author = {Weber Nunes, Danilo and Rauber, David and Palm, Christoph}, title = {Self-supervised 3D Vision Transformer Pre-training for Robust Brain Tumor Classification}, series = {Bildverarbeitung f{\"u}r die Medizin 2025: Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2025: Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025}, editor = {Palm, Christoph and Breininger, Katharina and Deserno, Thomas M. and Handels, Heinz and Maier, Andreas and Maier-Hein, Klaus H. and Tolxdorff, Thomas}, publisher = {Springer Vieweg}, address = {Wiesbaden}, doi = {10.1007/978-3-658-47422-5_69}, pages = {298 -- 303}, abstract = {Brain tumors pose significant challenges in neurology, making precise classification crucial for prognosis and treatment planning. This work investigates the effectiveness of a self-supervised learning approach-masked autoencoding (MAE)-to pre-train a vision transformer (ViT) model for brain tumor classification. Our method uses non-domain specific data, leveraging the ADNI and OASIS-3 MRI datasets, which primarily focus on degenerative diseases, for pretraining. The model is subsequently fine-tuned and evaluated on the BraTS glioma and meningioma datasets, representing a novel use of these datasets for tumor classification. The pre-trained MAE ViT model achieves an average F1 score of 0.91 in a 5-fold cross-validation setting, outperforming the nnU-Net encoder trained from scratch, particularly under limited data conditions. These findings highlight the potential of self-supervised MAE in enhancing brain tumor classification accuracy, even with restricted labeled data.}, language = {en} } @inproceedings{WeiherervonRiedheimBrebantetal., author = {Weiherer, Maximilian and von Riedheim, Antonia and Br{\´e}bant, Vanessa and Egger, Bernhard and Palm, Christoph}, title = {iRBSM: A Deep Implicit 3D Breast Shape Model}, series = {Bildverarbeitung f{\"u}r die Medizin 2025: Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2025: Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025}, editor = {Palm, Christoph and Breininger, Katharina and Deserno, Thomas M. and Handels, Heinz and Maier, Andreas and Maier-Hein, Klaus H. and Tolxdorff, Thomas}, publisher = {Springer Vieweg}, address = {Wiesbaden}, doi = {10.1007/978-3-658-47422-5_11}, pages = {38 -- 43}, abstract = {We present the first deep implicit 3D shape model of the female breast, building upon and improving the recently proposed Regensburg Breast Shape Model (RBSM). Compared to its PCA-based predecessor, our model employs implicit neural representations; hence, it can be trained on raw 3D breast scans and eliminates the need for computationally demanding non-rigid registration, a task that is particularly difficult for feature-less breast shapes. The resulting model, dubbed iRBSM, captures detailed surface geometry including fine structures such as nipples and belly buttons, is highly expressive, and outperforms the RBSM on different surface reconstruction tasks. Finally, leveraging the iRBSM, we present a prototype application to 3D reconstruct breast shapes from just a single image. Model and code publicly available at https://rbsm.re-mic.de/implicit.}, language = {en} } @inproceedings{GutbrodGeislerRauberetal., author = {Gutbrod, Max and Geisler, Benedikt and Rauber, David and Palm, Christoph}, title = {Data Augmentation for Images of Chronic Foot Wounds}, series = {Bildverarbeitung f{\"u}r die Medizin 2024: Proceedings, German Workshop on Medical Image Computing, March 10-12, 2024, Erlangen}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2024: Proceedings, German Workshop on Medical Image Computing, March 10-12, 2024, Erlangen}, editor = {Maier, Andreas and Deserno, Thomas M. and Handels, Heinz and Maier-Hein, Klaus H. and Palm, Christoph and Tolxdorff, Thomas}, publisher = {Springer}, address = {Wiesbaden}, doi = {10.1007/978-3-658-44037-4_71}, pages = {261 -- 266}, abstract = {Training data for Neural Networks is often scarce in the medical domain, which often results in models that struggle to generalize and consequently showpoor performance on unseen datasets. Generally, adding augmentation methods to the training pipeline considerably enhances a model's performance. Using the dataset of the Foot Ulcer Segmentation Challenge, we analyze two additional augmentation methods in the domain of chronic foot wounds - local warping of wound edges along with projection and blurring of shapes inside wounds. Our experiments show that improvements in the Dice similarity coefficient and Normalized Surface Distance metrics depend on a sensible selection of those augmentation methods.}, language = {en} } @inproceedings{RueckertRiederFeussneretal., author = {R{\"u}ckert, Tobias and Rieder, Maximilian and Feussner, Hubertus and Wilhelm, Dirk and R{\"u}ckert, Daniel and Palm, Christoph}, title = {Smoke Classification in Laparoscopic Cholecystectomy Videos Incorporating Spatio-temporal Information}, series = {Bildverarbeitung f{\"u}r die Medizin 2024: Proceedings, German Workshop on Medical Image Computing, March 10-12, 2024, Erlangen}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2024: Proceedings, German Workshop on Medical Image Computing, March 10-12, 2024, Erlangen}, editor = {Maier, Andreas and Deserno, Thomas M. and Handels, Heinz and Maier-Hein, Klaus H. and Palm, Christoph and Tolxdorff, Thomas}, publisher = {Springeer}, address = {Wiesbaden}, doi = {10.1007/978-3-658-44037-4_78}, pages = {298 -- 303}, abstract = {Heavy smoke development represents an important challenge for operating physicians during laparoscopic procedures and can potentially affect the success of an intervention due to reduced visibility and orientation. Reliable and accurate recognition of smoke is therefore a prerequisite for the use of downstream systems such as automated smoke evacuation systems. Current approaches distinguish between non-smoked and smoked frames but often ignore the temporal context inherent in endoscopic video data. In this work, we therefore present a method that utilizes the pixel-wise displacement from randomly sampled images to the preceding frames determined using the optical flow algorithm by providing the transformed magnitude of the displacement as an additional input to the network. Further, we incorporate the temporal context at evaluation time by applying an exponential moving average on the estimated class probabilities of the model output to obtain more stable and robust results over time. We evaluate our method on two convolutional-based and one state-of-the-art transformer architecture and show improvements in the classification results over a baseline approach, regardless of the network used.}, language = {en} } @inproceedings{GutbrodRauberWeberNunesetal., author = {Gutbrod, Max and Rauber, David and Weber Nunes, Danilo and Palm, Christoph}, title = {OpenMIBOOD: Open Medical Imaging Benchmarks for Out-Of-Distribution Detection}, series = {2025 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 10.-17. June 2025, Nashville}, booktitle = {2025 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 10.-17. June 2025, Nashville}, publisher = {IEEE}, isbn = {979-8-3315-4364-8}, doi = {10.1109/CVPR52734.2025.02410}, pages = {25874 -- 25886}, abstract = {The growing reliance on Artificial Intelligence (AI) in critical domains such as healthcare demands robust mechanisms to ensure the trustworthiness of these systems, especially when faced with unexpected or anomalous inputs. This paper introduces the Open Medical Imaging Benchmarks for Out-Of-Distribution Detection (OpenMIBOOD), a comprehensive framework for evaluating out-of-distribution (OOD) detection methods specifically in medical imaging contexts. OpenMIBOOD includes three benchmarks from diverse medical domains, encompassing 14 datasets divided into covariate-shifted in-distribution, nearOOD, and far-OOD categories. We evaluate 24 post-hoc methods across these benchmarks, providing a standardized reference to advance the development and fair comparison of OODdetection methods. Results reveal that findings from broad-scale OOD benchmarks in natural image domains do not translate to medical applications, underscoring the critical need for such benchmarks in the medical field. By mitigating the risk of exposing AI models to inputs outside their training distribution, OpenMIBOOD aims to support the advancement of reliable and trustworthy AI systems in healthcare. The repository is available at https://github.com/remic-othr/OpenMIBOOD.}, language = {en} } @inproceedings{GutbrodRauberPalm, author = {Gutbrod, Max and Rauber, David and Palm, Christoph}, title = {Improving Generalization in Mitotic Cell Detection via Domain Transformations}, series = {Bildverarbeitung f{\"u}r die Medizin 2025: Proceedings, German Conference on Medical Image Computing, L{\"u}beck March 15-17, 2026}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2025: Proceedings, German Conference on Medical Image Computing, L{\"u}beck March 15-17, 2026}, editor = {Handels, Heinz and Breininger, Katharina and Deserno, Thomas M. and Maier, Andreas and Maier-Hein, Klaus H. and Palm, Christoph and Tolxdorff, Thomas}, publisher = {Springer Vieweg}, address = {Wiesbaden}, doi = {10.1007/978-3-658-51100-5_71}, pages = {362 -- 367}, abstract = {We address domain generalization (DG) in mitotic-cell (MC) detection by combining a β-variational autoencoder (VAE) for domain transformations with feature-space alignment together with an object detector. The β-VAE synthesizes domain-transformed images, and the detector is trained to map originals and their transformed counterparts to equal representations. On the MIDOG++ dataset, this approach improves out-of-domain detection F1 scores by 7 and 3 percentage points compared to the color-variation augmentation and stain-normalization baselines. Results further suggest that morphology shifts hinder generalization more than stain shifts.}, subject = {K{\"u}nstliche Intelligenz}, language = {en} }