TY - CHAP A1 - Hoppe, Frederik A1 - Verdun, Claudio Mayrink A1 - Laus, Hannah A1 - Endt, Sebastian A1 - Menzel, Marion Irene A1 - Krahmer, Felix A1 - Rauhut, Holger ED - Leonardis, Aleš ED - Ricci, Elisa ED - Roth, Stefan ED - Russakovsky, Olga ED - Sattler, Torsten ED - Varol, Gül T1 - Imaging with Confidence: Uncertainty Quantification for High-Dimensional Undersampled MR Images T2 - Computer Vision – ECCV 2024: 18th European Conference, Proceedings, Part LXXVIII UR - https://doi.org/10.1007/978-3-031-73229-4_25 Y1 - 2024 UR - https://doi.org/10.1007/978-3-031-73229-4_25 SN - 978-3-031-73229-4 SP - 432 EP - 450 PB - Springer CY - Cham ER - TY - CHAP A1 - Hoppe, Frederik A1 - Krahmer, Felix A1 - Verdun, Claudio Mayrink A1 - Menzel, Marion Irene A1 - Rauhut, Holger T1 - High-Dimensional Confidence Regions in Sparse MRI T2 - Proceedings of the 2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) UR - https://doi.org/10.1109/ICASSP49357.2023.10096320 KW - debiased LASSO KW - compressed sensing KW - confidence regions KW - MRI Y1 - 2023 UR - https://doi.org/10.1109/ICASSP49357.2023.10096320 SN - 978-1-7281-6327-7 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Endt, Sebastian A1 - Pirkl, Carolin A1 - Verdun, Claudio Mayrink A1 - Menze, Bjoern H. A1 - Menzel, Marion Irene ED - Romero, Eduardo ED - Costa, Eduardo Tavares ED - Brieva, Jorge ED - Rittner, Leticia ED - Linguraru, Marius George ED - Lepore, Natasha T1 - Unmixing tissue compartments via deep learning T1-T2-relaxation correlation imaging T2 - 17th International Symposium on Medical Information Processing and Analysis UR - https://doi.org/10.1117/12.2604737 Y1 - 2021 UR - https://doi.org/10.1117/12.2604737 SN - 978-1-5106-5053-4 SN - 978-1-5106-5052-7 PB - SPIE CY - Bellingham ER - TY - CHAP A1 - Golbabaee, Mohammad A1 - Chen, Dongdong A1 - Gómez, Pedro A. A1 - Menzel, Marion Irene A1 - Davies, Mike E. T1 - Geometry of Deep Learning for Magnetic Resonance Fingerprinting T2 - ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) UR - https://doi.org/10.1109/ICASSP.2019.8683549 KW - magnetic resonance fingerprinting KW - inverse problem KW - deep learning KW - dictionary KW - manifold compressed sensing Y1 - 2019 UR - https://doi.org/10.1109/ICASSP.2019.8683549 SN - 978-1-5386-4658-8 SP - 7825 EP - 7829 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Fatania, Ketan A1 - Pirkl, Carolin A1 - Menzel, Marion Irene A1 - Hall, Peter A1 - Golbabaee, Mohammad T1 - A Plug-and-Play Approach To Multiparametric Quantitative MRI: Image Reconstruction Using Pre-Trained Deep Denoisers T2 - Proceedings of the 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI) UR - https://doi.org/10.1109/ISBI52829.2022.9761603 KW - Quantitative MRI KW - Magnetic Resonance Fingerprinting KW - Compressed Sensing KW - Inverse Problems KW - Deep Learning KW - Iterative Image Reconstruction KW - Plug-and-Play Y1 - 2022 UR - https://doi.org/10.1109/ISBI52829.2022.9761603 SN - 978-1-6654-2923-8 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Pirkl, Carolin A1 - Cencini, Matteo A1 - Kurzawski, Jan W. A1 - Waldmannstetter, Diana A1 - Li, Hongwei A1 - Sekuboyina, Anjany A1 - Endt, Sebastian A1 - Peretti, Luca A1 - Donatelli, Graziella A1 - Pasquariello, Rosa A1 - Costagli, Mauro A1 - Buonincontri, Guido A1 - Tosetti, Michela A1 - Menzel, Marion Irene A1 - Menze, Bjoern H. T1 - Residual learning for 3D motion corrected quantitative MRI BT - Robust clinical T1, T2 and proton density mapping T2 - Medical Imaging with Deep Learning MIDL 2021 KW - 3D multiparametric MRI KW - motion correction KW - deep learning KW - residual learning KW - multiscale CNN Y1 - 2021 UR - https://openreview.net/forum?id=hxgQM71AuRA PB - OpenReview ER - TY - CHAP A1 - Pirkl, Carolin A1 - Gómez, Pedro A. A1 - Lipp, Ilona A1 - Buonincontri, Guido A1 - Molina-Romero, Miguel A1 - Sekuboyina, Anjany A1 - Waldmannstetter, Diana A1 - Dannenberg, Jonathan A1 - Endt, Sebastian A1 - Merola, Alberto A1 - Whittaker, Joseph R. A1 - Tomassini, Valentina A1 - Tosetti, Michela A1 - Jones, Derek K. A1 - Menze, Bjoern H. A1 - Menzel, Marion Irene T1 - Deep learning-based parameter mapping for joint relaxation and diffusion tensor MR Fingerprinting T2 - Proceedings of Machine Learning Research KW - Magnetic Resonance Fingerprinting KW - Convolutional Neural Network KW - Image Reconstruction KW - Diffusion Tensor KW - Multiple Sclerosis Y1 - 2020 UR - https://proceedings.mlr.press/v121/pirk20a.html SN - 2640-3498 IS - 121 SP - 639 EP - 654 PB - PMLR CY - [s. l.] ER - TY - CHAP A1 - Molina-Romero, Miguel A1 - Wiestler, Benedikt A1 - Gómez, Pedro A. A1 - Menzel, Marion Irene A1 - Menze, Bjoern H. T1 - Deep Learning with Synthetic Diffusion MRI Data for Free-Water Elimination in Glioblastoma Cases T2 - Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 UR - https://doi.org/10.1007/978-3-030-00931-1_12 KW - Glioblastoma KW - Brain tumor KW - DTI KW - Deep learning KW - Free-water elimination KW - Data harmonization KW - Fractional anisotropy Y1 - 2018 UR - https://doi.org/10.1007/978-3-030-00931-1_12 SN - 978-3-030-00931-1 SN - 978-3-030-00930-4 SP - 98 EP - 106 PB - Springer CY - Cham ER - TY - CHAP A1 - Chen, Dongdong A1 - Golbabaee, Mohammad A1 - Gómez, Pedro A. A1 - Menzel, Marion Irene A1 - Davies, Mike E. ED - Cardoso, M. Jorge ED - Feragen, Aasa ED - Glocker, Ben ED - Konukoglu, Ender ED - Oguz, Ipek ED - Unal, Gozde ED - Vercauteren, Tom T1 - Deep Fully Convolutional Network for MR Fingerprinting T2 - Medical Imaging with Deep Learning, MIDL 2019: Extended Abstract Track N2 - This work proposes an end-to-end deep fully convolutional neural network for MRF reconstruction (MRF-FCNN), which firstly employs linear dimensionality reduction and then uses a neural network to project the data into the tissue parameters. The MRF dictionary is only used for training the network and not during image reconstruction. We show that MRF-FCNN is capable of achieving accuracy comparable to the ground-truth maps thanks to capturing spatio-temporal data structures without a need for the non-scalable dictionary matching step used in the baseline reconstructions. KW - Magnetic Resonance Fingerprinting KW - Deep Learning Y1 - 2019 UR - https://openreview.net/forum?id=SJxUdvJTtN UR - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:573-31163 ER - TY - CHAP A1 - Golbabaee, Mohammad A1 - Chen, Dongdong A1 - Davies, Mike E. A1 - Menzel, Marion Irene A1 - Gómez, Pedro A. ED - Cardoso, M. Jorge ED - Feragen, Aasa ED - Glocker, Ben ED - Konukoglu, Ender ED - Oguz, Ipek ED - Unal, Gozde ED - Vercauteren, Tom T1 - Spatio-temporal regularization for deep MR Fingerprinting T2 - Medical Imaging with Deep Learning, MIDL 2019: Extended Abstract Track N2 - We study a deep learning approach to address the heavy storage and computation re- quirements of the baseline dictionary-matching (DM) for Magnetic Resonance Fingerprint- ing (MRF) reconstruction. The MRF-Net provides a piece-wise affine approximation to the (temporal) Bloch response manifold projection. Fed with non-iterated back-projected images, the network alone is unable to fully resolve spatially-correlated artefacts which ap- pear in highly undersampling regimes. We propose an accelerated iterative reconstruction to minimize these artefacts before feeding into the network. This is done through a convex regularization that jointly promotes spatio-temporal regularities of the MRF time-series. KW - magnetic resonance fingerprinting KW - deep learning KW - regularisation Y1 - 2019 UR - https://openreview.net/forum?id=ryx64UL6YE UR - https://2019.midl.io/program/extended-abstracts.html UR - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:573-31174 ER - TY - CHAP A1 - Golkov, Vladimir A1 - Sprenger, Tim A1 - Sperl, Jonathan I. A1 - Menzel, Marion Irene A1 - Czisch, Michael A1 - Sämann, Philipp G. A1 - Cremers, Daniel T1 - Model-free novelty-based diffusion MRI T2 - 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) UR - https://doi.org/10.1109/ISBI.2016.7493489 Y1 - 2016 UR - https://doi.org/10.1109/ISBI.2016.7493489 SN - 978-1-4799-2349-6 SP - 1233 EP - 1236 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Fatania, Ketan A1 - Chau, Kwai Y. A1 - Pirkl, Carolin A1 - Menzel, Marion Irene A1 - Golbabaee, Mohammad T1 - Nonlinear Equivariant Imaging: Learning Multi-Parametric Tissue Mapping without Ground Truth for Compressive Quantitative MRI T2 - 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) UR - https://doi.org/10.1109/ISBI53787.2023.10230440 Y1 - 2023 UR - https://doi.org/10.1109/ISBI53787.2023.10230440 SN - 978-1-6654-7358-3 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Gómez, Pedro A. A1 - Sperl, Jonathan I. A1 - Sprenger, Tim A1 - Metzler-Baddeley, Claudia A1 - Jones, Derek K. A1 - Saemann, Philipp A1 - Czisch, Michael A1 - Menzel, Marion Irene A1 - Menze, Bjoern H. ED - Handels, Heinz ED - Deserno, Thomas Martin ED - Meinzer, Hans-Peter ED - Tolxdorff, Thomas T1 - Joint Reconstruction of Multi-Contrast MRI for Multiple Sclerosis Lesion Segmentation T2 - Bildverarbeitung für die Medizin 2015, Algorithmen – Systeme – Anwendungen, Proceedings des Workshops vom 15. bis 17. März 2015 in Lübeck UR - https://doi.org/10.1007/978-3-662-46224-9_28 Y1 - 2015 UR - https://doi.org/10.1007/978-3-662-46224-9_28 SN - 978-3-662-46224-9 SN - 978-3-662-46223-2 N1 - Die vollständige Angabe der Autorinnen und Autoren findet sich im PDF. SP - 155 EP - 160 PB - Springer Vieweg CY - Berlin ER - TY - CHAP A1 - Mayo, Perla A1 - Cencini, Matteo A1 - Pirkl, Carolin A1 - Menzel, Marion Irene A1 - Tosetti, Michela A1 - Menze, Bjoern H. A1 - Golbabaee, Mohammad ED - XU, Xuanang ED - Cui, Zhiming ED - Rekik, Islem ED - Ouyang, Xi ED - Sun, Kaicong T1 - StoDIP: Efficient 3D MRF Image Reconstruction with Deep Image Priors and Stochastic Iterations T2 - Machine Learning in Medical Imaging: 15th International Workshop, MLMI 2024, Held in Conjunction with MICCAI 2024, Proceedings, Part II UR - https://doi.org/10.1007/978-3-031-73290-4_13 Y1 - 2024 UR - https://doi.org/10.1007/978-3-031-73290-4_13 SN - 978-3-031-73290-4 SP - 128 EP - 137 PB - Springer CY - Cham ER - TY - CHAP A1 - Krajsek, Kai A1 - Menzel, Marion Irene A1 - Scharr, Hanno T1 - Riemannian Bayesian estimation of diffusion tensor images T2 - 2009 IEEE 12th International Conference on Computer Vision UR - https://doi.org/10.1109/ICCV.2009.5459431 Y1 - 2009 UR - https://doi.org/10.1109/ICCV.2009.5459431 SN - 978-1-4244-4420-5 SP - 2327 EP - 2334 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Kudielka, Guido P. A1 - Kluge, Thomas A1 - Shair, Sultan A1 - Menzel, Marion Irene T1 - Magnetic Resonance Imaging for 3D Resin Flow and Curing Process Monitoring T2 - CAMX, the Composites and Advanced Materials Expo, October 26-29, 2015: Conference / October 27-29, 2015: Exhibits, Dallas, Texas USA / Dallas Convention Center Y1 - 2015 UR - https://www.nasampe.org/store/viewproduct.aspx?id=5477796 SN - 978-1-934551-20-2 SP - 144 EP - 154 PB - ACMA CY - Arlington ER - TY - CHAP A1 - Ulas, Cagdas A1 - Gómez, Pedro A. A1 - Krahmer, Felix A1 - Sperl, Jonathan I. A1 - Menzel, Marion Irene A1 - Menze, Bjoern H. ED - Zuluaga, Maria A. ED - Bhatia, Kanwal ED - Kainz, Bernhard ED - Moghari, Mehdi H. ED - Pace, Danielle F. T1 - Robust Reconstruction of Accelerated Perfusion MRI Using Local and Nonlocal Constraints T2 - Reconstruction, Segmentation, and Analysis of Medical Images, First International Workshops, RAMBO 2016 and HVSMR 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Revised Selected Papers UR - https://doi.org/10.1007/978-3-319-52280-7_4 Y1 - 2017 UR - https://doi.org/10.1007/978-3-319-52280-7_4 SN - 978-3-319-52280-7 SN - 978-3-319-52279-1 SP - 37 EP - 47 PB - Springer CY - Cham ER - TY - CHAP A1 - Krajsek, Kai A1 - Menzel, Marion Irene A1 - Zwanger, Michael A1 - Scharr, Hanno ED - Forsyth, David ED - Torr, Philipp ED - Zisserman, Andrew T1 - Riemannian Anisotropic Diffusion for Tensor Valued Images T2 - Computer vision - ECCV 2008, 10th European Conference on Computer Vision, Marseille, France, October 12-18, 2008, Proceedings, Part IV UR - https://doi.org/10.1007/978-3-540-88693-8_24 Y1 - 2008 UR - https://doi.org/10.1007/978-3-540-88693-8_24 SN - 978-3-540-88692-1 SN - 978-3-540-88693-8 SP - 326 EP - 339 PB - Springer CY - Berlin ER - TY - CHAP A1 - Golkov, Vladimir A1 - Sperl, Jonathan I. A1 - Menzel, Marion Irene A1 - Sprenger, Tim A1 - Tan, Ek Tsoon A1 - Marinelli, Luca A1 - Hardy, Christopher J. A1 - Haase, Axel A1 - Cremers, Daniel ED - O'Donnell, Lauren ED - Nedjati-Gilan, Gemma ED - Rathi, Yogesh ED - Reisert, Marco ED - Schneider, Torben T1 - Joint Super-Resolution Using Only One Anisotropic Low-Resolution Image per q-Space Coordinate T2 - Computational Diffusion MRI, MICCAI Workshop, Boston, MA, USA, September 2014 UR - https://doi.org/10.1007/978-3-319-11182-7_16 Y1 - 2014 UR - https://doi.org/10.1007/978-3-319-11182-7_16 SN - 978-3-319-11182-7 SN - 978-3-319-11181-0 SP - 181 EP - 191 PB - Springer CY - Cham ER - TY - CHAP A1 - Gómez, Pedro A. A1 - Ulas, Cagdas A1 - Sperl, Jonathan I. A1 - Sprenger, Tim A1 - Molina-Romero, Miguel A1 - Menzel, Marion Irene A1 - Menze, Bjoern H. ED - Wu, Guorong ED - Coupé, Pierrick ED - Zhan, Yiqiang ED - Munsell, Brent ED - Rueckert, Daniel T1 - Learning a Spatiotemporal Dictionary for Magnetic Resonance Fingerprinting with Compressed Sensing T2 - Patch-Based Techniques in Medical Imaging, First International Workshop, Patch-MI 2015, Held in Conjunction with MICCAI 2015 Munich, Germany, October 9, 2015 Revised Selected Papers UR - https://doi.org/10.1007/978-3-319-28194-0_14 Y1 - 2016 UR - https://doi.org/10.1007/978-3-319-28194-0_14 SN - 978-3-319-28194-0 SN - 978-3-319-28193-3 SP - 112 EP - 119 PB - Springer CY - Cham ER -