TY - CHAP A1 - Ganz, Jonathan A1 - Kirsch, Tobias A1 - Hoffmann, Lucas A1 - Maier, Andreas A1 - Breininger, Katharina A1 - Blümcke, Ingmar A1 - Jabari, Samir A1 - Aubreville, Marc T1 - Automatic and explainable grading of meningiomas from histopathology images T2 - Proceedings of Machine Learning Research: Proceedings of COMPAY 2021 KW - automatic tumor grading KW - meningioma KW - known operator learning KW - deep learning Y1 - 2021 UR - https://proceedings.mlr.press/v156/ganz21a.html VL - 2021 IS - 156 SP - 69 EP - 80 PB - PMLR CY - [s. l.] ER - TY - CHAP A1 - Aubreville, Marc A1 - Bertram, Christof A1 - Klopfleisch, Robert A1 - Maier, Andreas ED - Handels, Heinz ED - Deserno, Thomas Martin ED - Maier, Andreas ED - Maier-Hein, Klaus H. ED - Palm, Christoph ED - Tolxdorff, Thomas T1 - Augmented mitotic cell count using field of interest proposal T2 - Bildverarbeitung für die Medizin 2019, Algorithmen – Systeme – Anwendungen, Proceedings des Workshops vom 17. bis 19. März 2019 in Lübeck UR - https://doi.org/10.1007/978-3-658-25326-4_71 Y1 - 2019 UR - https://doi.org/10.1007/978-3-658-25326-4_71 SN - 978-3-658-25325-7 SN - 978-3-658-25326-4 N1 - Access to this content is enabled by Nationallizenz Ebooks Medicine SP - 321 EP - 326 PB - Springer Vieweg CY - Wiesbaden ER - TY - CHAP A1 - Aubreville, Marc A1 - Goncalves, Miguel A1 - Knipfer, Christian A1 - Oetter, Nicolai A1 - Würfl, Tobias A1 - Neumann, Helmut A1 - Stelzle, Florian A1 - Bohr, Christopher A1 - Maier, Andreas T1 - Transferability of deep learning algorithms for malignancy detection in confocal laser endomicroscopy images from different anatomical locations of the upper gastrointestinal tract T2 - Biomedical Engineering Systems and Technologies UR - https://doi.org/10.1007/978-3-030-29196-9_4 KW - Confocal Laser Endomicroscopy KW - Transfer learning KW - Head and neck squamous cell carcinoma Y1 - 2019 UR - https://doi.org/10.1007/978-3-030-29196-9_4 SN - 978-3-030-29195-2 SN - 978-3-030-29196-9 SN - 1865-0929 N1 - Access to this content is enabled by Nationallizenz Ebooks Medicine SP - 67 EP - 85 PB - Springer CY - Cham ER - TY - CHAP A1 - Stoeve, Maike A1 - Aubreville, Marc A1 - Oetter, Nicolai A1 - Knipfer, Christian A1 - Neumann, Helmut A1 - Stelzle, Florian A1 - Maier, Andreas ED - Maier, Andreas ED - Deserno, Thomas Martin ED - Handels, Heinz ED - Maier-Hein, Klaus H. ED - Palm, Christoph ED - Tolxdorff, Thomas T1 - Motion Artifact Detection in Confocal Laser Endomicroscopy Images T2 - Bildverarbeitung für die Medizin 2018: Algorithmen - Systeme - Anwendungen UR - https://doi.org/10.1007/978-3-662-56537-7_85 Y1 - 2018 UR - https://doi.org/10.1007/978-3-662-56537-7_85 SN - 978-3-662-56537-7 SP - 328 EP - 333 PB - Springer Vieweg CY - Berlin ER - TY - JOUR A1 - Bertram, Christof A1 - Aubreville, Marc A1 - Gurtner, Corinne A1 - Bartel, Alexander A1 - Corner, Sarah M. A1 - Dettwiler, Martina A1 - Kershaw, Olivia A1 - Noland, Erica L. A1 - Schmidt, Anja A1 - Sledge, Dodd G. A1 - Smedley, Rebecca C. A1 - Thaiwong, Tuddow A1 - Kiupel, Matti A1 - Maier, Andreas A1 - Klopfleisch, Robert T1 - Mitotic count in canine cutaneous mast cell tumours BT - not accurate but reproducible JF - Journal of Comparative Pathology UR - https://doi.org/10.1016/j.jcpa.2019.10.015 Y1 - 2020 UR - https://doi.org/10.1016/j.jcpa.2019.10.015 SN - 1532-3129 VL - 2020 IS - 174 SP - 143 PB - Elsevier CY - London ER - TY - CHAP A1 - Steffes, Lara-Maria A1 - Aubreville, Marc A1 - Sesselmann, Stefan A1 - Krenn, Veit A1 - Maier, Andreas ED - Maier, Andreas ED - Deserno, Thomas Martin ED - Handels, Heinz ED - Maier-Hein, Klaus H. ED - Palm, Christoph ED - Tolxdorff, Thomas T1 - Classification of Polyethylene Particles and the Local CD3+ Lymphocytosis in Histological Slices T2 - Bildverarbeitung für die Medizin 2018 UR - https://doi.org/10.1007/978-3-662-56537-7_63 Y1 - 2018 UR - https://doi.org/10.1007/978-3-662-56537-7_63 SN - 978-3-662-56536-0 SP - 228 EP - 233 PB - Springer CY - Berlin ER - TY - INPR A1 - Wilm, Frauke A1 - Fragoso-Garcia, Marco A1 - Bertram, Christof A1 - Stathonikos, Nikolas A1 - Öttl, Mathias A1 - Qiu, Jingna A1 - Klopfleisch, Robert A1 - Maier, Andreas A1 - Aubreville, Marc A1 - Breininger, Katharina T1 - Mind the Gap: Scanner-induced domain shifts pose challenges for representation learning in histopathology UR - https://doi.org/10.48550/arXiv.2211.16141 KW - Histopathology KW - Domain Shift KW - Representation Learning KW - Barlow Twins Y1 - 2022 UR - https://doi.org/10.48550/arXiv.2211.16141 PB - arXiv CY - Ithaca ER - TY - CHAP A1 - Aubreville, Marc A1 - Krappmann, Maximilian A1 - Bertram, Christof A1 - Klopfleisch, Robert A1 - Maier, Andreas T1 - A Guided Spatial Transformer Network for Histology Cell Differentiation T2 - VCBM '17: Proceedings of the Eurographics Workshop on Visual Computing for Biology and Medicine UR - https://doi.org/10.2312/vcbm.20171233 Y1 - 2017 UR - https://doi.org/10.2312/vcbm.20171233 SN - 978-3-03868-036-9 SP - 21 EP - 25 PB - Eurographics Association CY - Goslar ER - TY - CHAP A1 - Aubreville, Marc A1 - Bertram, Christof A1 - Klopfleisch, Robert A1 - Maier, Andreas T1 - SlideRunner BT - a tool for massive cell annotations in whole slide images T2 - Bildverarbeitung für die Medizin 2018: Algorithmen - Systeme - Anwendungen N2 - Large-scale image data such as digital whole-slide histology images pose a challenging task at annotation software solutions. Today, a number of good solutions with varying scopes exist. For cell annotation, however, we find that many do not match the prerequisites for fast annotations. Especially in the field of mitosis detection, it is assumed that detection accuracy could significantly benefit from larger annotation databases that are currently however very troublesome to produce. Further, multiple independent (blind) expert labels are a big asset for such databases, yet there is currently no tool for this kind of annotation available. To ease this tedious process of expert annotation and grading, we introduce SlideRunner, an open source annotation and visualization tool for digital histopathology, developed in close cooperation with two pathologists. SlideRunner is capable of setting annotations like object centers (for e.g. cells) as well as object boundaries (e.g. for tumor outlines). It provides single-click annotations as well as a blind mode for multi-annotations, where the expert is directly shown the microscopy image containing the cells that he has not yet rated. UR - https://doi.org/10.1007/978-3-662-56537-7_81 Y1 - 2018 UR - https://doi.org/10.1007/978-3-662-56537-7_81 SN - 978-3-662-56537-7 SP - 309 EP - 314 PB - Springer Vieweg CY - Berlin ER - TY - CHAP A1 - Marzahl, Christian A1 - Bertram, Christof A1 - Aubreville, Marc A1 - Petrick, Anne A1 - Weiler, Kristina A1 - Gläsel, Agnes C. A1 - Fragoso-Garcia, Marco A1 - Merz, Sophie A1 - Bartenschlager, Florian A1 - Hoppe, Judith A1 - Langenhagen, Alina A1 - Jasensky, Anne-Katherine A1 - Voigt, Jörn A1 - Klopfleisch, Robert A1 - Maier, Andreas T1 - Are Fast Labeling Methods Reliable? A Case Study of Computer-Aided Expert Annotations on Microscopy Slides T2 - Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 UR - https://doi.org/10.1007/978-3-030-59710-8_3 KW - Pathology KW - Microscopy KW - Computer-aided labelling KW - Expert-algorithm collaboration Y1 - 2020 UR - https://doi.org/10.1007/978-3-030-59710-8_3 SN - 978-3-030-59710-8 SN - 1611-3349 SP - 24 EP - 32 PB - Springer CY - Cham ER - TY - CHAP A1 - Schröter, H. A1 - Rosenkranz, Tobias A1 - Escalante-B, A. N. A1 - Aubreville, Marc A1 - Maier, Andreas T1 - CLCNET: deep learning-based noise reduction for hearing aids using complex linear coding T2 - ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) UR - https://doi.org/10.1109/ICASSP40776.2020.9053563 KW - noise reduction KW - speech enhancement KW - LPC KW - hearing aid signal processing KW - deep learning Y1 - 2020 UR - https://doi.org/10.1109/ICASSP40776.2020.9053563 SN - 978-1-5090-6631-5 SP - 6949 EP - 6953 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Marzahl, Christian A1 - Aubreville, Marc A1 - Voigt, Jörn A1 - Maier, Andreas T1 - Classification of leukemic b-lymphoblast cells from blood smear microscopic images with an attention-based deep learning method and advanced augmentation techniques T2 - ISBI 2019 C-NMC challenge: classification in cancer cell imaging UR - https://doi.org/10.1007/978-981-15-0798-4_2 Y1 - 2019 UR - https://doi.org/10.1007/978-981-15-0798-4_2 SN - 978-981-15-0797-7 SN - 978-981-15-0798-4 SN - 978-981-15-0800-4 SN - 2195-271X SN - 2195-2728 SP - 13 EP - 22 PB - Springer CY - Singapore ER - TY - CHAP A1 - Bertram, Christof A1 - Veta, Mitko A1 - Marzahl, Christian A1 - Stathonikos, Nikolas A1 - Maier, Andreas A1 - Klopfleisch, Robert A1 - Aubreville, Marc T1 - Are Pathologist-Defined Labels Reproducible? Comparison of the TUPAC16 Mitotic Figure Dataset with an Alternative Set of Labels T2 - Interpretable and Annotation-Efficient Learning for Medical Image Computing UR - https://doi.org/10.1007/978-3-030-61166-8_22 KW - Breast cancer KW - Mitotic figures KW - Computer-aided annotation KW - Deep learning Y1 - 2020 UR - https://doi.org/10.1007/978-3-030-61166-8_22 SN - 978-3-030-61166-8 SN - 1611-3349 SP - 204 EP - 213 PB - Springer CY - Cham ER - TY - CHAP A1 - Aubreville, Marc A1 - Ehrensperger, Kai A1 - Maier, Andreas A1 - Rosenkranz, Tobias A1 - Graf, Benjamin A1 - Puder, Henning T1 - Deep Denoising for Hearing Aid Applications T2 - IWAENC Proceedings UR - https://doi.org/10.1109/IWAENC.2018.8521369 KW - noise reduction KW - hearing aid signal processing KW - deep neural networks Y1 - 2018 UR - https://doi.org/10.1109/IWAENC.2018.8521369 SN - 978-1-5386-8151-0 SP - 361 EP - 365 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Aubreville, Marc A1 - Petrausch, Stefan T1 - Directionality assessment of adaptive binaural beamforming with noise suppression in hearing aids T2 - 2015 IEEE International Conference on Acoustics, Speech, and Signal Processing: Proceedings UR - https://doi.org/10.1109/ICASSP.2015.7177962 KW - spatial processing KW - measurement KW - hearing aids KW - sequential directivity index Y1 - 2015 UR - https://doi.org/10.1109/ICASSP.2015.7177962 SN - 978-1-4673-6997-8 SP - 211 EP - 215 PB - IEEE CY - Piscataway ER - TY - CHAP A1 - Krappmann, Maximilian A1 - Aubreville, Marc A1 - Maier, Andreas A1 - Bertram, Christof A1 - Klopfleisch, Robert ED - Maier, Andreas ED - Deserno, Thomas Martin ED - Handels, Heinz ED - Maier-Hein, Klaus H. ED - Palm, Christoph ED - Tolxdorff, Thomas T1 - Classification of Mitotic Cells BT - Potentials Beyond the Limits of Small Data Sets T2 - Bildverarbeitung für die Medizin 2018 UR - https://doi.org/10.1007/978-3-662-56537-7_66 Y1 - 2018 UR - https://doi.org/10.1007/978-3-662-56537-7_66 SN - 978-3-662-56536-0 SP - 245 EP - 250 PB - Springer CY - Berlin ER - TY - INPR A1 - Aubreville, Marc A1 - Krappmann, Maximilian A1 - Bertram, Christof A1 - Klopfleisch, Robert A1 - Maier, Andreas T1 - A Guided Spatial Transformer Network for Histology Cell Differentiation UR - https://doi.org/10.48550/arXiv.1707.08525 Y1 - 2017 UR - https://doi.org/10.48550/arXiv.1707.08525 PB - arXiv CY - Ithaca ER - TY - CHAP A1 - Qiu, Jingna A1 - Wilm, Frauke A1 - Öttl, Mathias A1 - Schlereth, Maja A1 - Liu, Chang A1 - Heimann, Tobias A1 - Aubreville, Marc A1 - Breininger, Katharina ED - Greenspan, Hayit ED - Madabhushi, Anant ED - Mousavi, Parvin ED - Salcudean, Septimiu ED - Duncan, James ED - Syeda-Mahmood, Tanveer ED - Taylor, Russell T1 - Adaptive Region Selection for Active Learning in Whole Slide Image Semantic Segmentation T2 - Medical Image Computing and Computer Assisted Intervention – MICCAI 2023: Proceedings, Part II UR - https://doi.org/10.1007/978-3-031-43895-0_9 Y1 - 2023 UR - https://doi.org/10.1007/978-3-031-43895-0_9 SN - 978-3-031-43895-0 SN - 1611-3349 SP - 90 EP - 100 PB - Springer CY - Cham ER - TY - CHAP A1 - Ganz, Jonathan A1 - Lipnik, Karoline A1 - Ammeling, Jonas A1 - Richter, Barbara A1 - Puget, Chloé A1 - Parlak, Eda A1 - Diehl, Laura A1 - Klopfleisch, Robert A1 - Donovan, Taryn A1 - Kiupel, Matti A1 - Bertram, Christof A1 - Breininger, Katharina A1 - Aubreville, Marc ED - Deserno, Thomas Martin ED - Handels, Heinz ED - Maier, Andreas ED - Maier-Hein, Klaus H. ED - Palm, Christoph ED - Tolxdorff, Thomas T1 - Deep Learning-based Automatic Assessment of AgNOR-scores in Histopathology Images T2 - Bildverarbeitung für die Medizin 2023: Proceedings, German Workshop on Medical Image Computing, Braunschweig, July 2-4, 2023 UR - https://doi.org/10.1007/978-3-658-41657-7_49 Y1 - 2023 UR - https://doi.org/10.1007/978-3-658-41657-7_49 SN - 978-3-658-41657-7 SN - 978-3-658-41656-0 SP - 226 EP - 231 PB - Springer Vieweg CY - Wiesbaden ER - TY - CHAP A1 - Wilm, Frauke A1 - Fragoso-Garcia, Marco A1 - Bertram, Christof A1 - Stathonikos, Nikolas A1 - Öttl, Mathias A1 - Qiu, Jingna A1 - Klopfleisch, Robert A1 - Maier, Andreas A1 - Aubreville, Marc A1 - Breininger, Katharina T1 - Mind the Gap: Scanner-Induced Domain Shifts Pose Challenges for Representation Learning in Histopathology T2 - 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) UR - https://doi.org/10.1109/ISBI53787.2023.10230458 KW - Histopathology KW - Domain Shift KW - Representation Learning KW - Barlow Twins Y1 - 2023 UR - https://doi.org/10.1109/ISBI53787.2023.10230458 SN - 978-1-6654-7358-3 PB - IEEE CY - Piscataway ER -