@inproceedings{KrappmannAubrevilleMaieretal.2018, author = {Krappmann, Maximilian and Aubreville, Marc and Maier, Andreas and Bertram, Christof and Klopfleisch, Robert}, title = {Classification of Mitotic Cells}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2018}, subtitle = {Potentials Beyond the Limits of Small Data Sets}, editor = {Maier, Andreas and Deserno, Thomas Martin and Handels, Heinz and Maier-Hein, Klaus H. and Palm, Christoph and Tolxdorff, Thomas}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-56536-0}, doi = {https://doi.org/10.1007/978-3-662-56537-7_66}, pages = {245 -- 250}, year = {2018}, language = {en} } @unpublished{AubrevilleKrappmannBertrametal.2017, author = {Aubreville, Marc and Krappmann, Maximilian and Bertram, Christof and Klopfleisch, Robert and Maier, Andreas}, title = {A Guided Spatial Transformer Network for Histology Cell Differentiation}, publisher = {arXiv}, address = {Ithaca}, doi = {https://doi.org/10.48550/arXiv.1707.08525}, year = {2017}, language = {en} } @article{SievertMantsopoulosMuelleretal.2022, author = {Sievert, Matti and Mantsopoulos, Konstantinos and M{\"u}ller, Sarina K. and Eckstein, Markus and Rupp, Robin and Aubreville, Marc and Stelzle, Florian and Oetter, Nicolai and Maier, Andreas and Iro, Heinrich and Goncalves, Miguel}, title = {Systematic interpretation of confocal laser endomicroscopy: larynx and pharynx confocal imaging score}, volume = {42}, journal = {Acta otorhinolaryngologica italica}, number = {1}, publisher = {Pacini}, address = {Pisa}, issn = {1827-675X}, doi = {https://doi.org/10.14639/0392-100X-N1643}, pages = {26 -- 33}, year = {2022}, abstract = {Objective. Development and validation of a confocal laser endomicroscopy (CLE) classification score for the larynx and pharynx. Methods. Thirteen patients (154 video sequences, 9240 images) with laryngeal or pharyngeal SCC were included in this prospective study between October 2020 and February 2021. Each CLE sequence was correlated with the gold standard of histopathological examination. Based on a dataset of 94 video sequences (5640 images), a scoring system was developed. In the remaining 60 sequences (3600 images), the score was validated by four CLE experts and four head and neck surgeons who were not familiar with CLE. Results. Tissue homogeneity, cell size, borders and clusters, capillary loops and the nucleus/ cytoplasm ratio were defined as the scoring criteria. Using this score, the CLE experts obtained an accuracy, sensitivity, and specificity of 90.8\%, 95.1\%, and 86.4\%, respectively, and the CLE non-experts of 86.2\%, 86.4\%, and 86.1\%. Interobserver agreement Fleiss' kappa was 0.8 and 0.6, respectively. Conclusions. CLE can be reliably evaluated based on defined and reproducible imaging features, which demonstrate a high diagnostic value. CLE can be easily integrated into the intraoperative setting and generate real-time, in-vivo microscopic images to demarcate malignant changes.}, language = {en} } @inproceedings{WilmFragosoGarciaBertrametal.2023, author = {Wilm, Frauke and Fragoso-Garcia, Marco and Bertram, Christof and Stathonikos, Nikolas and {\"O}ttl, Mathias and Qiu, Jingna and Klopfleisch, Robert and Maier, Andreas and Aubreville, Marc and Breininger, Katharina}, title = {Mind the Gap: Scanner-Induced Domain Shifts Pose Challenges for Representation Learning in Histopathology}, booktitle = {2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI)}, publisher = {IEEE}, address = {Piscataway}, isbn = {978-1-6654-7358-3}, doi = {https://doi.org/10.1109/ISBI53787.2023.10230458}, year = {2023}, language = {en} } @article{WilmIhlingMehesetal.2023, author = {Wilm, Frauke and Ihling, Christian and M{\´e}hes, G{\´a}bor and Terracciano, Luigi and Puget, Chlo{\´e} and Klopfleisch, Robert and Sch{\"u}ffler, Peter and Aubreville, Marc and Maier, Andreas and Mrowiec, Thomas and Breininger, Katharina}, title = {Pan-tumor T-lymphocyte detection using deep neural networks: Recommendations for transfer learning in immunohistochemistry}, volume = {2023}, pages = {100301}, journal = {Journal of Pathology Informatics}, number = {14}, publisher = {Elsevier}, address = {Amsterdam}, issn = {2153-3539}, doi = {https://doi.org/10.1016/j.jpi.2023.100301}, year = {2023}, abstract = {The success of immuno-oncology treatments promises long-term cancer remission for an increasing number of patients. The response to checkpoint inhibitor drugs has shown a correlation with the presence of immune cells in the tumor and tumor microenvironment. An in-depth understanding of the spatial localization of immune cells is therefore critical for understanding the tumor's immune landscape and predicting drug response. Computer-aided systems are well suited for efficiently quantifying immune cells in their spatial context. Conventional image analysis approaches are often based on color features and therefore require a high level of manual interaction. More robust image analysis methods based on deep learning are expected to decrease this reliance on human interaction and improve the reproducibility of immune cell scoring. However, these methods require sufficient training data and previous work has reported low robustness of these algorithms when they are tested on out-of-distribution data from different pathology labs or samples from different organs. In this work, we used a new image analysis pipeline to explicitly evaluate the robustness of marker-labeled lymphocyte quantification algorithms depending on the number of training samples before and after being transferred to a new tumor indication. For these experiments, we adapted the RetinaNet architecture for the task of T-lymphocyte detection and employed transfer learning to bridge the domain gap between tumor indications and reduce the annotation costs for unseen domains. On our test set, we achieved human-level performance for almost all tumor indications with an average precision of 0.74 in-domain and 0.72-0.74 cross-domain. From our results, we derive recommendations for model development regarding annotation extent, training sample selection, and label extraction for the development of robust algorithms for immune cell scoring. By extending the task of marker-labeled lymphocyte quantification to a multi-class detection task, the pre-requisite for subsequent analyses, e.g., distinguishing lymphocytes in the tumor stroma from tumor-infiltrating lymphocytes, is met.}, language = {en} } @article{FragosoGarciaWilmBertrametal.2023, author = {Fragoso-Garcia, Marco and Wilm, Frauke and Bertram, Christof and Merz, Sophie and Schmidt, Anja and Donovan, Taryn and Fuchs-Baumgartinger, Andrea and Bartel, Alexander and Marzahl, Christian and Diehl, Laura and Puget, Chloe and Maier, Andreas and Aubreville, Marc and Breininger, Katharina and Klopfleisch, Robert}, title = {Automated diagnosis of 7 canine skin tumors using machine learning on H\&E-stained whole slide images}, volume = {60}, journal = {Veterinary Pathology}, number = {6}, publisher = {Sage}, address = {London}, issn = {0300-9858}, doi = {https://doi.org/10.1177/03009858231189205}, pages = {865 -- 875}, year = {2023}, abstract = {Microscopic evaluation of hematoxylin and eosin-stained slides is still the diagnostic gold standard for a variety of diseases, including neoplasms. Nevertheless, intra- and interrater variability are well documented among pathologists. So far, computer assistance via automated image analysis has shown potential to support pathologists in improving accuracy and reproducibility of quantitative tasks. In this proof of principle study, we describe a machine-learning-based algorithm for the automated diagnosis of 7 of the most common canine skin tumors: trichoblastoma, squamous cell carcinoma, peripheral nerve sheath tumor, melanoma, histiocytoma, mast cell tumor, and plasmacytoma. We selected, digitized, and annotated 350 hematoxylin and eosin-stained slides (50 per tumor type) to create a database divided into training, n = 245 whole-slide images (WSIs), validation ( n = 35 WSIs), and test sets ( n = 70 WSIs). Full annotations included the 7 tumor classes and 6 normal skin structures. The data set was used to train a convolutional neural network (CNN) for the automatic segmentation of tumor and nontumor classes. Subsequently, the detected tumor regions were classified patch-wise into 1 of the 7 tumor classes. A majority of patches-approach led to a tumor classification accuracy of the network on the slide-level of 95\% (133/140 WSIs), with a patch-level precision of 85\%. The same 140 WSIs were provided to 6 experienced pathologists for diagnosis, who achieved a similar slide-level accuracy of 98\% (137/140 correct majority votes). Our results highlight the feasibility of artificial intelligence-based methods as a support tool in diagnostic oncologic pathology with future applications in other species and tumor types.}, language = {en} } @article{SievertAubrevilleGostianetal.2022, author = {Sievert, Matti and Aubreville, Marc and Gostian, Antoniu-Oreste and Mantsopoulos, Konstantinos and Koch, Michael and M{\"u}ller, Sarina K. and Eckstein, Markus and Rupp, Robin and Stelzle, Florian and Oetter, Nicolai and Maier, Andreas and Iro, Heinrich and Goncalves, Miguel}, title = {Validity of tissue homogeneity in confocal laser endomicroscopy on the diagnosis of laryngeal and hypopharyngeal squamous cell carcinoma}, volume = {279}, journal = {European Archives of Oto-Rhino-Laryngology and Head \& Neck}, number = {8}, publisher = {Springer Nature}, address = {Cham}, issn = {1434-4726}, doi = {https://doi.org/10.1007/s00405-022-07304-y}, pages = {4147 -- 4156}, year = {2022}, abstract = {Purpose Confocal laser endomicroscopy (CLE) allows imaging of the laryngeal mucosa in a thousand-fold magnification. This study analyzes differences in tissue homogeneity between healthy mucosa and squamous cell carcinoma (SCC) via CLE. Materials and methods We included five SCC patients with planned total laryngectomy in this study between October 2020 and February 2021. We captured CLE scans of the tumor and healthy mucosa. Analysis of image homogeneity to diagnose SCC was performed by measuring the signal intensity in four regions of interest (ROI) in each frame in a total of 60 sequences. Each sequence was assigned to the corresponding histological pattern, derived from hematoxylin and eosin staining. In addition, we recorded the subjective evaluation of seven investigators regarding tissue homogeneity. Results Out of 3600 images, 1620 (45\%) correlated with benign mucosa and 1980 (55\%) with SCC. ROIs of benign mucosa and SCC had a mean and standard deviation (SD) of signal intensity of, respectively, 232.1 ± 3.34 and 467.3 ± 9.72 (P < 0.001). The mean SD between the four different ROIs was 39.1 ± 1.03 for benign and 101.5 ± 2.6 for SCC frames (P < 0.001). In addition, homogeneity yielded a sensitivity and specificity of 81.8\% and 86.2\%, respectively, regarding the investigator-dependent analysis. Conclusions SCC shows a significant tissue inhomogeneity in comparison to the healthy epithelium. The results support this feature's importance in identifying malignant mucosa areas during CLE examination. However, the examiner-dependent evaluation emphasizes that homogeneity is a sub-criterion that must be considered in a broad context.}, language = {en} } @article{SievertMantsopoulosMuelleretal.2021, author = {Sievert, Matti and Mantsopoulos, Konstantinos and M{\"u}ller, Sarina K. and Rupp, Robin and Eckstein, Markus and Stelzle, Florian and Oetter, Nicolai and Maier, Andreas and Aubreville, Marc and Iro, Heinrich and Goncalves, Miguel}, title = {Validation of a classification and scoring system for the diagnosis of laryngeal and pharyngeal squamous cell carcinomas by confocal laser endomicroscopy}, volume = {2022}, journal = {Brazilian Journal of Otorhinolaryngology}, number = {88, S4}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1808-8694}, doi = {https://doi.org/10.1016/j.bjorl.2021.06.002}, pages = {26 -- 32}, year = {2021}, abstract = {Introduction Confocal laser endomicroscopy is an optical imaging technique that allows in vivo, real-time, microscope-like images of the upper aerodigestive tract's mucosa. The assessment of morphological tissue characteristics for the correct differentiation between healthy and malignant suspected mucosa requires strict evaluation criteria. Objective This study aims to validate an eight-point score for the correct assessment of malignancy. Methods We performed confocal laser endomicroscopy between March and October 2020 in 13 patients. 197 sequences (11.820 images) originated from the marginal area of pharyngeal and laryngeal carcinomas. Specimens were taken at corresponding locations and analyzed in H\&E staining as a standard of reference. A total of six examiners evaluated the sequences based on a scoring system; they were blinded to the histopathological examination. The primary endpoints are sensitivity, specificity, and accuracy. Secondary endpoints are interrater reliability and receiver operator characteristics. Results Healthy mucosa showed epithelium with uniform size and shape with distinct cytoplasmic membranes and regular vessel architecture. Confocal laser endomicroscopy of malignant cells demonstrated a disorganized arrangement of variable cellular morphology. We calculated an accuracy, sensitivity, specificity, positive predictive value, and negative predictive value of 83.2\%, 81.3\%, 85.5\%, 86.7\%, and 79.7\%, respectively, with a κ-value of 0.64, and an area under the curve of 0.86. Conclusion The results confirm that this scoring system is applicable in the laryngeal and pharyngeal mucosa to classify benign and malignant tissue. A scoring system based on defined and reproducible characteristics can help translate this experimental method to broad clinical practice in head and neck diagnosis.}, language = {en} } @article{SievertEcksteinMantsopoulosetal.2021, author = {Sievert, Matti and Eckstein, Markus and Mantsopoulos, Konstantinos and M{\"u}ller, Sarina K. and Stelzle, Florian and Aubreville, Marc and Oetter, Nicolai and Maier, Andreas and Iro, Heinrich and Goncalves, Miguel}, title = {Impact of intraepithelial capillary loops and atypical vessels in confocal laser endomicroscopy for the diagnosis of laryngeal and hypopharyngeal squamous cell carcinoma}, volume = {279}, journal = {European Archives of Oto-Rhino-Laryngology and Head \& Neck}, number = {4}, publisher = {Springer Nature}, address = {Cham}, issn = {1434-4726}, doi = {https://doi.org/10.1007/s00405-021-06954-8}, pages = {2029 -- 2037}, year = {2021}, abstract = {Purpose Confocal laser endomicroscopy (CLE) allows surface imaging of the laryngeal and pharyngeal mucosa in vivo at a thousand-fold magnification. This study aims to compare irregular blood vessels and intraepithelial capillary loops in healthy mucosa and squamous cell carcinoma (SCC) via CLE. Materials and methods We included ten patients with confirmed SCC and planned total laryngectomy in this study between March 2020 and February 2021. CLE images of these patients were collected and compared with the corresponding histology in hematoxylin and eosin staining. We analyzed the characteristic endomicroscopic patterns of blood vessels and intraepithelial capillary loops for the diagnosis of SCC. Results In a total of 54 sequences, we identified 243 blood vessels which were analyzed regarding structure, diameter, and Fluorescein leakage, confirming that irregular, corkscrew-like vessels (24.4\% vs. 1.3\%; P < .001), dilated intraepithelial capillary loops (90.8\% vs. 28.7\%; P < .001), and increased capillary leakage (40.7\% vs. 2.5\%; P < .001), are significantly more frequently detected in SCC compared to the healthy epithelium. We defined a vessel diameter of 30 μm in capillary loops as a cut-off value, obtaining a sensitivity, specificity, PPV, and NPV and accuracy of 90.6\%, 71.3\%, 57.4\%, 94.7\%, and 77.1\%, respectively, for the detection of malignancy based solely on capillary architecture. Conclusion Capillaries within malignant lesions are fundamentally different from those in healthy mucosa regions. The capillary architecture is a significant feature aiding the identification of malignant mucosa areas during in-vivo, real-time CLE examination.}, language = {en} } @article{AubrevilleStathonikosBertrametal.2022, author = {Aubreville, Marc and Stathonikos, Nikolas and Bertram, Christof and Klopfleisch, Robert and Hoeve, Natalie ter and Ciompi, Francesco and Wilm, Frauke and Marzahl, Christian and Donovan, Taryn and Maier, Andreas and Breen, Jack and Ravikumar, Nishant and Chung, Youjin and Park, Jinah and Nateghi, Ramin and Pourakpour, Fattaneh and Fick, Rutger H. J. and Ben Hadj, Saima and Jahanifar, Mostafa and Shepard, Adam and Dexl, Jakob and Wittenberg, Thomas and Kondo, Satoshi and Lafarge, Maxime W. and Kolezer, Viktor H. and Liang, Jingtang and Wang, Yubo and Long, Xi and Liu, Jingxin and Razavi, Salar and Khademi, April and Yang, Sen and Wang, Xiyue and Erber, Ramona and Klang, Andrea and Lipnik, Karoline and Bolfa, Pompei and Dark, Michael and Wasinger, Gabriel and Veta, Mitko and Breininger, Katharina}, title = {Mitosis domain generalization in histopathology images — The MIDOG challenge}, volume = {2023}, pages = {102699}, journal = {Medical Image Analysis}, number = {84}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1361-8415}, doi = {https://doi.org/10.1016/j.media.2022.102699}, year = {2022}, language = {en} } @article{PanBreiningerAubrevilleetal.2022, author = {Pan, Zhaoya and Breininger, Katharina and Aubreville, Marc and Stelzle, Florian and Oetter, Nicolai and Maier, Andreas and Mantsopoulos, Konstantinos and Iro, Heinrich and Goncalves, Miguel and Sievert, Matti}, title = {Defining a baseline identification of artifacts in confocal laser endomicroscopy in head and neck cancer imaging}, volume = {44}, pages = {103779}, journal = {American Journal of Otolaryngology}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1532-818X}, doi = {https://doi.org/10.1016/j.amjoto.2022.103779}, year = {2022}, language = {en} } @inproceedings{TheelkeWilmMarzahletal.2021, author = {Theelke, Luisa and Wilm, Frauke and Marzahl, Christian and Bertram, Christof and Klopfleisch, Robert and Maier, Andreas and Aubreville, Marc and Breininger, Katharina}, title = {Iterative Cross-Scanner Registration for Whole Slide Images}, booktitle = {2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW)}, publisher = {IEEE}, address = {Piscataway}, isbn = {978-1-6654-0191-3}, issn = {2473-9944}, doi = {https://doi.org/10.1109/ICCVW54120.2021.00071}, pages = {582 -- 590}, year = {2021}, language = {en} } @inproceedings{AubrevilleBertramStathonikosetal.2021, author = {Aubreville, Marc and Bertram, Christof and Stathonikos, Nikolas and ter Hoeve, Natalie and Ciompi, Francesco and Klopfleisch, Robert and Veta, Mitko and Donovan, Taryn and Marzahl, Christian and Wilm, Frauke and Breininger, Katharina and Maier, Andreas}, title = {Quantifying the Scanner-Induced Domain Gap in Mitosis Detection}, booktitle = {MIDL: Medical Imaging with Deep Learning 2021}, publisher = {MIDL Foundation}, address = {Nijmegen}, url = {https://2021.midl.io/papers/i6}, year = {2021}, language = {en} } @article{BertramMarzahlBarteletal.2022, author = {Bertram, Christof and Marzahl, Christian and Bartel, Alexander and Stayt, Jason and Bonsembiante, Federico and Beeler-Marfisi, Janet and Barton, Ann K. and Brocca, Ginevra and Gelain, Maria Elena and Gl{\"a}sel, Agnes C. and du Preez, Kelly and Weiler, Kristina and Weissenbacher-Lang, Christiane and Breininger, Katharina and Aubreville, Marc and Maier, Andreas and Klopfleisch, Robert and Hill, Jenny}, title = {Cytologic scoring of equine exercise-induced pulmonary hemorrhage: Performance of human experts and a deep learning-based algorithm}, volume = {60}, journal = {Veterinary Pathology}, number = {1}, publisher = {Sage}, address = {London}, issn = {1544-2217}, doi = {https://doi.org/10.1177/03009858221137582}, pages = {75 -- 85}, year = {2022}, abstract = {Exercise-induced pulmonary hemorrhage (EIPH) is a relevant respiratory disease in sport horses, which can be diagnosed by examination of bronchoalveolar lavage fluid (BALF) cells using the total hemosiderin score (THS). The aim of this study was to evaluate the diagnostic accuracy and reproducibility of annotators and to validate a deep learning-based algorithm for the THS. Digitized cytological specimens stained for iron were prepared from 52 equine BALF samples. Ten annotators produced a THS for each slide according to published methods. The reference methods for comparing annotator's and algorithmic performance included a ground truth dataset, the mean annotators' THSs, and chemical iron measurements. Results of the study showed that annotators had marked interobserver variability of the THS, which was mostly due to a systematic error between annotators in grading the intracytoplasmatic hemosiderin content of individual macrophages. Regarding overall measurement error between the annotators, 87.7\% of the variance could be reduced by using standardized grades based on the ground truth. The algorithm was highly consistent with the ground truth in assigning hemosiderin grades. Compared with the ground truth THS, annotators had an accuracy of diagnosing EIPH (THS of < or ≥ 75) of 75.7\%, whereas, the algorithm had an accuracy of 92.3\% with no relevant differences in correlation with chemical iron measurements. The results show that deep learning-based algorithms are useful for improving reproducibility and routine applicability of the THS. For THS by experts, a diagnostic uncertainty interval of 40 to 110 is proposed. THSs within this interval have insufficient reproducibility regarding the EIPH diagnosis.}, language = {en} } @article{SievertAubrevilleOetteretal.2021, author = {Sievert, Matti and Aubreville, Marc and Oetter, Nicolai and Stelzle, Florian and Maier, Andreas and Mantsopoulos, Konstantinos and Iro, Heinrich and Goncalves, Miguel}, title = {Konfokale Laser-Endomikroskopie des Kopf-Hals-Plattenepithelkarzinoms: eine systematische {\"U}bersicht}, volume = {100}, journal = {Laryngo-Rhino-Otologie}, number = {11}, publisher = {Thieme}, address = {Stuttgart}, issn = {0935-8943}, doi = {https://doi.org/10.1055/a-1339-1635}, pages = {875 -- 881}, year = {2021}, language = {de} } @article{SievertStelzleAubrevilleetal.2021, author = {Sievert, Matti and Stelzle, Florian and Aubreville, Marc and M{\"u}ller, Sarina K. and Eckstein, Markus and Oetter, Nicolai and Maier, Andreas and Mantsopoulos, Konstantinos and Iro, Heinrich and Goncalves, Miguel}, title = {Intraoperative free margins assessment of oropharyngeal squamous cell carcinoma with confocal laser endomicroscopy: a pilot study}, volume = {278}, journal = {European Archives of Oto-Rhino-Laryngology and Head \& Neck}, number = {11}, publisher = {Springer Nature}, address = {Cham}, issn = {1434-4726}, doi = {https://doi.org/10.1007/s00405-021-06659-y}, pages = {4433 -- 4439}, year = {2021}, abstract = {Purpose This pilot study aimed to assess the feasibility of intraoperative assessment of safe margins with confocal laser endomicroscopy (CLE) during oropharyngeal squamous cell carcinoma (OPSCC) surgery. Methods We included five consecutive patients confirmed OPSCC and planned tumor resection in September and October 2020. Healthy appearing mucosa in the marginal zone, and the tumor margin, were examined with CLE and biopsy during tumor resection. A total of 12,809 CLE frames were correlated with the gold standard of hematoxylin and eosin staining. Three head and neck surgeons and one pathologist were asked to identify carcinoma in a sample of 169 representative images, blinded to the histological results. Results Healthy mucosa showed epithelium with uniform size and shape with distinct cytoplasmic membranes and regular vessel architecture. CLE optical biopsy of OPSCC demonstrated a disorganized arrangement of variable cellular morphology. We calculated an accuracy, sensitivity, specificity, PPV, and NPV of 86\%, 90\%, 79\%, 88\%, and 82\%, respectively, with inter-rater reliability and κ-value of 0.60. Conclusion CLE can be easily integrated into the intraoperative setting, generate real-time, in-vivo microscopic images of the oropharynx for evaluation and demarcation of cancer. It can eventually contribute to a less radical approach by enabling a more precise evaluation of the cancer margin.}, language = {en} } @inproceedings{WilmBertramMarzahletal.2021, author = {Wilm, Frauke and Bertram, Christof and Marzahl, Christian and Bartel, Alexander and Donovan, Taryn and Assenmacher, Charles-Antoine and Becker, Kathrin and Bennett, Mark and Corner, Sarah M. and Cossic, Brieuc and Denk, Daniela and Dettwiler, Martina and Garcia Gonzalez, Beatriz and Gurtner, Corinne and Heier, Annabelle and Lehmbecker, Annika and Merz, Sophie and Plog, Stephanie and Schmidt, Anja and Sebastian, Franziska and Smedley, Rebecca C. and Tecilla, Marco and Thaiwong, Tuddow and Breininger, Katharina and Kiupel, Matti and Maier, Andreas and Klopfleisch, Robert and Aubreville, Marc}, title = {Influence of inter-annotator variability on automatic mitotic figure assessment}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2021}, publisher = {Springer}, address = {Wiesbaden}, isbn = {978-3-658-33198-6}, doi = {https://doi.org/10.1007/978-3-658-33198-6_56}, pages = {241 -- 246}, year = {2021}, language = {en} } @inproceedings{BertramDonovanTecillaetal.2021, author = {Bertram, Christof and Donovan, Taryn and Tecilla, Marco and Bartenschlager, Florian and Fragoso-Garcia, Marco and Wilm, Frauke and Marzahl, Christian and Breininger, Katharina and Maier, Andreas and Klopfleisch, Robert and Aubreville, Marc}, title = {Dataset on bi- and multi-nucleated tumor cells in canine cutaneous mast cell tumors}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2021: Proceedings, German Workshop on Medical Image Computing, Regensburg, March 7-9, 2021}, publisher = {Springer Vieweg}, address = {Wiesbaden}, isbn = {978-3-658-33197-9}, issn = {1431-472X}, doi = {https://doi.org/10.1007/978-3-658-33198-6_33}, pages = {134 -- 139}, year = {2021}, language = {en} } @inproceedings{MarzahlBertramWilmetal.2021, author = {Marzahl, Christian and Bertram, Christof and Wilm, Frauke and Voigt, J{\"o}rn and Barton, Ann K. and Klopfleisch, Robert and Breininger, Katharina and Maier, Andreas and Aubreville, Marc}, title = {Cell detection for asthma on partially annotated whole slide images}, booktitle = {Bildverarbeitung f{\"u}r die Medizin 2021: Proceedings, German Workshop on Medical Image Computing, Regensburg, March 7-9, 2021}, subtitle = {learning to be EXACT}, publisher = {Springer Vieweg}, address = {Wiesbaden}, isbn = {978-3-658-33197-9}, issn = {1431-472X}, doi = {https://doi.org/10.1007/978-3-658-33198-6_36}, pages = {147 -- 152}, year = {2021}, language = {en} } @article{OetterProellSievertetal.2024, author = {Oetter, Nicolai and Pr{\"o}ll, Jonas and Sievert, Matti and Goncalves, Miguel and Rohde, Maximilian and Nobis, Christopher-Philipp and Knipfer, Christian and Aubreville, Marc and Pan, Zhaoya and Breininger, Katharina and Maier, Andreas and Kesting, Marco and Stelzle, Florian}, title = {Oral mucosa - an examination map for confocal laser endomicroscopy within the oral cavity: an experimental clinical study}, volume = {28}, pages = {266}, journal = {Clinical Oral Investigations}, number = {5}, publisher = {Springer}, address = {Berlin}, issn = {1436-3771}, doi = {https://doi.org/10.1007/s00784-024-05664-9}, year = {2024}, abstract = {Objectives Confocal laser endomicroscopy (CLE) is an optical method that enables microscopic visualization of oral mucosa. Previous studies have shown that it is possible to differentiate between physiological and malignant oral mucosa. However, differences in mucosal architecture were not taken into account. The objective was to map the different oral mucosal morphologies and to establish a "CLE map" of physiological mucosa as baseline for further application of this powerful technology. Materials and methods The CLE database consisted of 27 patients. The following spots were examined: (1) upper lip (intraoral) (2) alveolar ridge (3) lateral tongue (4) floor of the mouth (5) hard palate (6) intercalary line. All sequences were examined by two CLE experts for morphological differences and video quality. Results Analysis revealed clear differences in image quality and possibility of depicting tissue morphologies between the various localizations of oral mucosa: imaging of the alveolar ridge and hard palate showed visually most discriminative tissue morphology. Labial mucosa was also visualized well using CLE. Here, typical morphological features such as uniform cells with regular intercellular gaps and vessels could be clearly depicted. Image generation and evaluation was particularly difficult in the area of the buccal mucosa, the lateral tongue and the floor of the mouth. Conclusion A physiological "CLE map" for the entire oral cavity could be created for the first time. Clinical relevance This will make it possible to take into account the existing physiological morphological features when differentiating between normal mucosa and oral squamous cell carcinoma in future work.}, language = {en} }