TY - JOUR A1 - Alves, Caroline A1 - Cury, Rubens G. A1 - Roster, Kirstin A1 - Pineda, Aruane M. A1 - Rodrigues, Francisco A. A1 - Thielemann, Christiane A1 - Ciba, Manuel T1 - Application of machine learning and complex network measures to an EEG dataset from ayahuasca experiments JF - PLOS ONE N2 - Ayahuasca is a blend of Amazonian plants that has been used for traditional medicine by the inhabitants of this region for hundreds of years. Furthermore, this plant has been demon� strated to be a viable therapy for a variety of neurological and mental diseases. EEG experi� ments have found specific brain regions that changed significantly due to ayahuasca. Here, we used an EEG dataset to investigate the ability to automatically detect changes in brain activity using machine learning and complex networks. Machine learning was applied at three different levels of data abstraction: (A) the raw EEG time series, (B) the correlation of the EEG time series, and (C) the complex network measures calculated from (B). Further, at the abstraction level of (C), we developed new measures of complex networks relating to community detection. As a result, the machine learning method was able to automatically detect changes in brain activity, with case (B) showing the highest accuracy (92%), followed by (A) (88%) and (C) (83%), indicating that connectivity changes between brain regions are more important for the detection of ayahuasca. The most activated areas were the frontal and temporal lobe, which is consistent with the literature. F3 and PO4 were the most impor� tant brain connections, a significant new discovery for psychedelic literature. This connec� tion may point to a cognitive process akin to face recognition in individuals during ayahuasca-mediated visual hallucinations. Furthermore, closeness centrality and assorta� tivity were the most important complex network measures. These two measures are also associated with diseases such as Alzheimer’s disease, indicating a possible therapeutic mechanism. Moreover, the new measures were crucial to the predictive model and sug� gested larger brain communities associated with the use of ayahuasca. This suggests that the dissemination of information in functional brain networks is slower when this drug is present. Overall, our methodology was able to automatically detect changes in brain activity during ayahuasca consumption and interpret how these psychedelics alter brain networks, as well as provide insights into their mechanisms of action KW - Ayahuasca KW - Elektroencephalographie KW - Alzheimerkrankheit KW - Gehirn Y1 - 2022 U6 - https://doi.org/https://doi.org/10.1371/journal. pone.0277257 VL - 2022 IS - 12 SP - 1 EP - 26 ER - TY - JOUR A1 - Alves, Caroline A1 - Pineda, Aruane M. A1 - Roster, Kirstin A1 - Thielemann, Christiane A1 - Rodrigues, Francisco A. T1 - EEG functional connectivity and deep learning for automatic diagnosis of brain disorders: Alzheimer’s disease and schizophrenia JF - Journal of Physics: complexity N2 - Mental disorders are among the leading causes of disability worldwide. The first step in treating these conditions is to obtain an accurate diagnosis. Machine learning algorithms can provide a possible solution to this problem, as we describe in this work. We present a method for the automatic diagnosis of mental disorders based on the matrix of connections obtained from EEG time series and deep learning. We show that our approach can classify patients with Alzheimer’s disease and schizophrenia with a high level of accuracy. The comparison with the traditional cases, that use raw EEG time series, shows that our method provides the highest precision. Therefore, the application of deep neural networks on data from brain connections is a very promising method for the diagnosis of neurological disorders. KW - complex networks KW - Machine learning KW - Hirnfunktionsstörung KW - Alzheimerkrankheit KW - Schizophrenie KW - Elektroencephalographie Y1 - 2022 U6 - https://doi.org/DOI 10.1088/2632-072X/ac5f8d VL - 2022 IS - 3 SP - 1 EP - 13 ER - TY - JOUR A1 - Alves, Caroline A1 - Toutain, Thaise A1 - Aguiar, Patricia A1 - Pineda, Aruane M. A1 - Roster, Kirstin A1 - Thielemann, Christiane A1 - Porto, Joel A1 - Rodrigues, Francisco A. T1 - Diagnosis of autism spectrum disorder based on functional brain networks and machine learning JF - Scientific Reports N2 - Autism is a multifaceted neurodevelopmental condition whose accurate diagnosis may be challenging because the associated symptoms and severity vary considerably. The wrong diagnosis can affect families and the educational system, raising the risk of depression, eating disorders, and self-harm. Recently, many works have proposed new methods for the diagnosis of autism based on machine learning and brain data. However, these works focus on only one pairwise statistical metric, ignoring the brain network organization. In this paper, we propose a method for the automatic diagnosis of autism based on functional brain imaging data recorded from 500 subjects, where 242 present autism spectrum disorder considering the regions of interest throughout Bootstrap Analysis of Stable Cluster map. Our method can distinguish the control group from autism spectrum disorder patients with high accuracy. Indeed the best performance provides an AUC near 1.0, which is higher than that found in the literature. We verify that the left ventral posterior cingulate cortex region is less connected to an area in the cerebellum of patients with this neurodevelopment disorder, which agrees with previous studies. The functional brain networks of autism spectrum disorder patients show more segregation, less distribution of information across the network, and less connectivity compared to the control cases. Our workflow provides medical interpretability and can be used on other fMRI and EEG data, including small data sets. KW - Maschinelles Lernen KW - Gehirn KW - Neuronales Netz KW - Autismus Y1 - 2023 UR - https://rdcu.be/dcwIP U6 - https://doi.org/https://doi.org/10.1038/s41598-023-34650-6 VL - 2023 IS - 13/8072 SP - 1 EP - 20 ER -