@article{AlvesCuryRosteretal.2022, author = {Alves, Caroline and Cury, Rubens G. and Roster, Kirstin and Pineda, Aruane M. and Rodrigues, Francisco A. and Thielemann, Christiane and Ciba, Manuel}, title = {Application of machine learning and complex network measures to an EEG dataset from ayahuasca experiments}, series = {PLOS ONE}, volume = {2022}, journal = {PLOS ONE}, number = {12}, doi = {https://doi.org/10.1371/journal. pone.0277257}, pages = {1 -- 26}, year = {2022}, abstract = {Ayahuasca is a blend of Amazonian plants that has been used for traditional medicine by the inhabitants of this region for hundreds of years. Furthermore, this plant has been demon� strated to be a viable therapy for a variety of neurological and mental diseases. EEG experi� ments have found specific brain regions that changed significantly due to ayahuasca. Here, we used an EEG dataset to investigate the ability to automatically detect changes in brain activity using machine learning and complex networks. Machine learning was applied at three different levels of data abstraction: (A) the raw EEG time series, (B) the correlation of the EEG time series, and (C) the complex network measures calculated from (B). Further, at the abstraction level of (C), we developed new measures of complex networks relating to community detection. As a result, the machine learning method was able to automatically detect changes in brain activity, with case (B) showing the highest accuracy (92\%), followed by (A) (88\%) and (C) (83\%), indicating that connectivity changes between brain regions are more important for the detection of ayahuasca. The most activated areas were the frontal and temporal lobe, which is consistent with the literature. F3 and PO4 were the most impor� tant brain connections, a significant new discovery for psychedelic literature. This connec� tion may point to a cognitive process akin to face recognition in individuals during ayahuasca-mediated visual hallucinations. Furthermore, closeness centrality and assorta� tivity were the most important complex network measures. These two measures are also associated with diseases such as Alzheimer's disease, indicating a possible therapeutic mechanism. Moreover, the new measures were crucial to the predictive model and sug� gested larger brain communities associated with the use of ayahuasca. This suggests that the dissemination of information in functional brain networks is slower when this drug is present. Overall, our methodology was able to automatically detect changes in brain activity during ayahuasca consumption and interpret how these psychedelics alter brain networks, as well as provide insights into their mechanisms of action}, subject = {Ayahuasca}, language = {en} } @article{AlvesPinedaRosteretal.2022, author = {Alves, Caroline and Pineda, Aruane M. and Roster, Kirstin and Thielemann, Christiane and Rodrigues, Francisco A.}, title = {EEG functional connectivity and deep learning for automatic diagnosis of brain disorders: Alzheimer's disease and schizophrenia}, series = {Journal of Physics: complexity}, volume = {2022}, journal = {Journal of Physics: complexity}, number = {3}, doi = {DOI 10.1088/2632-072X/ac5f8d}, pages = {1 -- 13}, year = {2022}, abstract = {Mental disorders are among the leading causes of disability worldwide. The first step in treating these conditions is to obtain an accurate diagnosis. Machine learning algorithms can provide a possible solution to this problem, as we describe in this work. We present a method for the automatic diagnosis of mental disorders based on the matrix of connections obtained from EEG time series and deep learning. We show that our approach can classify patients with Alzheimer's disease and schizophrenia with a high level of accuracy. The comparison with the traditional cases, that use raw EEG time series, shows that our method provides the highest precision. Therefore, the application of deep neural networks on data from brain connections is a very promising method for the diagnosis of neurological disorders.}, subject = {Hirnfunktionsst{\"o}rung}, language = {en} } @article{AlvesToutainAguiaretal.2023, author = {Alves, Caroline and Toutain, Thaise and Aguiar, Patricia and Pineda, Aruane M. and Roster, Kirstin and Thielemann, Christiane and Porto, Joel and Rodrigues, Francisco A.}, title = {Diagnosis of autism spectrum disorder based on functional brain networks and machine learning}, series = {Scientific Reports}, volume = {2023}, journal = {Scientific Reports}, number = {13/8072}, doi = {https://doi.org/10.1038/s41598-023-34650-6}, pages = {1 -- 20}, year = {2023}, abstract = {Autism is a multifaceted neurodevelopmental condition whose accurate diagnosis may be challenging because the associated symptoms and severity vary considerably. The wrong diagnosis can affect families and the educational system, raising the risk of depression, eating disorders, and self-harm. Recently, many works have proposed new methods for the diagnosis of autism based on machine learning and brain data. However, these works focus on only one pairwise statistical metric, ignoring the brain network organization. In this paper, we propose a method for the automatic diagnosis of autism based on functional brain imaging data recorded from 500 subjects, where 242 present autism spectrum disorder considering the regions of interest throughout Bootstrap Analysis of Stable Cluster map. Our method can distinguish the control group from autism spectrum disorder patients with high accuracy. Indeed the best performance provides an AUC near 1.0, which is higher than that found in the literature. We verify that the left ventral posterior cingulate cortex region is less connected to an area in the cerebellum of patients with this neurodevelopment disorder, which agrees with previous studies. The functional brain networks of autism spectrum disorder patients show more segregation, less distribution of information across the network, and less connectivity compared to the control cases. Our workflow provides medical interpretability and can be used on other fMRI and EEG data, including small data sets.}, subject = {Maschinelles Lernen}, language = {en} } @article{AlvesToutainPortoetal.2023, author = {Alves, Caroline and Toutain, Thaise and Porto, Joel and Aguiar, Patricia and de Sena, Eduardo and Rodrigues, Francisco A. and Pineda, Aruane M. and Thielemann, Christiane}, title = {Analysis of functional connectivity using machine learning and deep learning in different data modalities from individuals with schizophrenia}, series = {Journal of Neural Engineering}, volume = {2023}, journal = {Journal of Neural Engineering}, number = {20/5}, doi = {10.1088/1741-2552/acf734}, pages = {0 -- 0}, year = {2023}, abstract = {Objective. Schizophrenia (SCZ) is a severe mental disorder associated with persistent or recurrent psychosis, hallucinations, delusions, and thought disorders that affect approximately 26 million people worldwide, according to the World Health Organization. Several studies encompass machine learning (ML) and deep learning algorithms to automate the diagnosis of this mental disorder. Others study SCZ brain networks to get new insights into the dynamics of information processing in individuals suffering from the condition. In this paper, we offer a rigorous approach with ML and deep learning techniques for evaluating connectivity matrices and measures of complex networks to establish an automated diagnosis and comprehend the topology and dynamics of brain networks in SCZ individuals. Approach. For this purpose, we employed an functional magnetic resonance imaging (fMRI) and electroencephalogram (EEG) dataset. In addition, we combined EEG measures, i.e. Hjorth mobility and complexity, with complex network measurements to be analyzed in our model for the first time in the literature. Main results. When comparing the SCZ group to the control group, we found a high positive correlation between the left superior parietal lobe and the left motor cortex and a positive correlation between the left dorsal posterior cingulate cortex and the left primary motor. Regarding complex network measures, the diameter, which corresponds to the longest shortest path length in a network, may be regarded as a biomarker because it is the most crucial measure in different data modalities. Furthermore, the SCZ brain networks exhibit less segregation and a lower distribution of information. As a result, EEG measures outperformed complex networks in capturing the brain alterations associated with SCZ. Significance. Our model achieved an area under receiver operating characteristic curve (AUC) of 100\% and an accuracy of 98.5\% for the fMRI, an AUC of 95\%, and an accuracy of 95.4\% for the EEG data set. These are excellent classification results. Furthermore, we investigated the impact of specific brain connections and network measures on these results, which helped us better describe changes in the diseased brain.}, subject = {Maschinelles Lernen}, language = {en} } @article{PinedaAlvesMoeckeletal.2023, author = {Pineda, Aruane M. and Alves, Caroline L. and M{\"o}ckel, Michael and de O Toutain, Thaise G. L. and Moura Porto, Joel Augusto and Rodrigues, Francisco A.}, title = {Analysis of quantile graphs in EGC data from elderly and young individuals using machine learning and deep learning}, series = {Journal of Complex Networks}, volume = {2023}, journal = {Journal of Complex Networks}, number = {11/5}, doi = {https://doi.org/10.1093/comnet/cnad030}, pages = {* -- *}, year = {2023}, abstract = {Heart disease, also known as cardiovascular disease, encompasses a variety of heart conditions that can result in sudden death for many people. Examples include high blood pressure, ischaemia, irregular heartbeats and pericardial effusion. Electrocardiogram (ECG) signal analysis is frequently used to diagnose heart diseases, providing crucial information on how the heart functions. To analyse ECG signals, quantile graphs (QGs) is a method that maps a time series into a network based on the time-series fluctuation proprieties. Here, we demonstrate that the QG methodology can differentiate younger and older patients. Furthermore, we construct networks from the QG method and use machine-learning algorithms to perform the automatic diagnosis, obtaining high accuracy. Indeed, we verify that this method can automatically detect changes in the ECG of elderly and young subjects, with the highest classification performance for the adjacency matrix with a mean area under the receiver operating characteristic curve close to one. The findings reported here confirm the QG method's utility in deciphering intricate, nonlinear signals like those produced by patient ECGs. Furthermore, we find a more significant, more connected and lower distribution of information networks associated with the networks from ECG data of the elderly compared with younger subjects. Finally, this methodology can be applied to other ECG data related to other diseases, such as ischaemia.}, subject = {Maschinelles Lernen}, language = {en} }