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The main goal of this dissertation was to explore the interactions between the hydrogeomorphology of the streambed in sandy lowland low-order streams and the microbial community inhabiting it. In particular, (i) the influence of the vertical water exchange across the streambed and (ii) of the sediment transport on the function and structure of the streambed microbial community, (iii) and the potential of the microbial community to influence these physical factors were explored. The influences were studied with a model system approach (micro- and mesocosms).
Firstly, I examined the significance of vertical water exchange across the streambed for the microbial community. I determined the differences in the microbial community structure and function associated with sediments of differing grain sizes. The grain sizes differed in surface-to-volume ratio and hydraulic conductivity. The results revealed vertical water exchange as the major factor for the structure and function of the microbial community.
Secondly, I studied the ability of the microbial community to influence the vertical water exchange across two sandy streambeds: leveled and rippled. My results showed that the microbial community can reduce and even block the vertical water exchange by reducing pore space with gas bubbles formed due to high primary production.
Thirdly, I determined the effect of short-term sediment transport events on the function of the microbial community and on the influence of the microbial community on vertical water exchange. The results show that the mechanical stress associated with short-term sediment transport events does not influence the microbial community function. However, a single short-term sediment transport event increased vertical water exchange by (i) releasing the gas bubbles produced by the microbial community and (ii) creating irregularities in the flume bed.
Lastly, I ascertained the potential of benthic algal mats to transport sediment by means of buoyancy-mediated detachment from the bed. The results revealed the detachment of algal mats as a novel mechanism of sediment transport during low-flow periods. Overall, the interactions studied show that in sandy streambeds (i) the pattern of vertical water exchange is the primary physical template for the microbial community, and (ii) the activity of the microbial community and sediment transport are stochastic sources of spatiotemporal heterogeneity in vertical water exchange. These results contribute to the understanding and prediction of stream ecosystem functions in sandy streams, which is of special significance in light of the increase in fine sediment load in streams worldwide.