TY - RPRT A1 - Swapnil, Chiru T1 - Stochastic simulation efficiency N2 - The work described in this report can be broadly divided into two sections. The first section considers two export features. We describe how the export for stochastic Petri nets to SBML level 1 has been added to the Petri net modelling and simulation tool Snoopy. This task was accomplished by making appropriate changes to the existing export code to generate SBML level 2. Also we demonstrate in detail, how the direct export for coloured Petri nets to both levels (i.e. 1 and 2) of SBML was realised. The next section summarises the performed comparison of different stochastic simulation tools for biochemical reaction networks. We first compare BioNetGen and SSC with each other by performing simulations on non-coloured Petri nets. Then, we compare the remaining four tools, i.e. Cain, Marcie, Snoopy and Stochkit with each other by performing simulation on coloured Petri nets. This work builds on results by Aman Sinha [19]. T3 - Computer science reports / Institut für Informatik - 2014,02 KW - Petri Nets KW - SBML KW - Stochastic simulation KW - Biochemical reaction networks KW - Export KW - MathML KW - Stochastisches Modell KW - Petri-Netz KW - Export Y1 - 2014 UR - https://opus4.kobv.de/opus4-btu/frontdoor/index/index/docId/3147 UR - https://nbn-resolving.org/urn:nbn:de:kobv:co1-opus4-31479 ER -