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Understanding the chemistry and nature of individual chemical bonds is essential for materials design. Bonding analysis via the LOBSTER software package has provided valuable insights into the properties of materials for thermoelectric and catalysis applications. Thus, the data generated from
bonding analysis becomes an invaluable asset that could be utilized as features in large-scale data analysis and machine learning of material properties. However, no systematic studies exist that conducted high-throughput materials simulations to curate and validate bonding data obtained from LOBSTER. Here we present an approach to constructing such a large database consisting of quantum-chemical bonding information.
The PMD Core Ontology (PMDco) is a comprehensive set of building blocks produced via consensus building. The ontological building blocks provide a framework representing knowledge about fundamental concepts used in Materials Science and Engineering (MSE) today. The PMDco is a mid-level ontology that establishes connections between narrower MSE application ontologies and domain neutral concepts used in already established broader (top-level) ontologies. The primary goal of the PMDco design is to enable interoperability between various other MSE-related ontologies and other common ontologies.
PMDco’s class structure is both comprehensive and extensible, rendering it an efficient tool to structure MSE knowledge. The PMDco serves as a semantic middle-layer unifying common MSE concepts via semantic mapping to other semantic representations using well-known key terms used in the MSE domain. The PMDco enables straight-forward documentation and tracking of science data generation and in consequence enables high-quality FAIR data that allows for precise reproducibility of scientific experiments.
The design of PMDco is based on the W3C Provenance Ontology (PROV-O), which provides a standard framework for capturing the production, derivation, and attribution of resources. Via this foundation, the PMDco enables the integration of data from various data origins and the representation of complex workflows.
In summary, the PMDco is a valuable advancement for researchers and practitioners in MSE domains. It provides a common MSE vocabulary to represent and share knowledge, allowing for efficient collaboration and promoting interoperability between diverse domains. Its design allows for the systematic integration of data and metadata, enabling seamless tracing of science data. Overall, the PMDco is a crucial step towards a unified and comprehensive understanding of the MSE domain in general.
A deep insight into the chemistry and nature of individual chemical bonds is essential for understanding materials. Bonding analysis is expected to provide important features for large-scale data analysis and machine learning of material properties. Such information on chemical bonds can be calculated using the LOBSTER (www.cohp.de) software package, which post-processes data from modern density functional theory computations by projecting plane wave-based wave functions onto a local atomic orbital basis. We have performed bonding analysis on 1520 compounds (insulators and semiconductors) using a fully automated workflow combining the VASP and LOBSTER software packages. We then automatically evaluated the data with LobsterPy (https://github.com/jageo/lobsterpy) and provide results as a database. The projected densities of states and bonding indicators are benchmarked on VASP projections and available heuristics, respectively. Lastly, we illustrate the predictive power of bonding descriptors by constructing a machine-learning model for phononic properties, which shows an increase in prediction accuracies by 27 % (mean absolute errors) compared to a benchmark model differing only by not relying on any quantum-chemical bonding features.
We created a workflow that fully automates bonding analysis using Crystal Orbital Hamilton Populations, which are bond-weighted densities of states. This enables understanding of crystalline material properties based on chemical bonding information. To facilitate data analysis and machine-learning research, our tools include automatic plots, automated text output, and output in machine-readable format.