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Surface functionalization of 2D- and 3D-supports and nanomaterials are nowadays at the core of many applications of functional materials in the life and material sciences. Examples range from membranes and microarrays over bead-based assays, immunoseparation, and next generation sequencing to nanometer-sized optical reporters, nanosensors, and magnetic and optical contrast agents. Typically performed functionalization procedures include silanization and grafting reactions with reactive monomers to introduce functional groups like amino or carboxylic acid groups and the attachment of ligands like polyethylene glycol (PEG) molecules and biomolecules such as peptides, proteins, and DNA.[1-3]
We present here a versatile concept to quantify the number of bioanalytically relevant functional groups like carboxyl, amino, and aldehyde moieties through the specific binding and subsequent release of small reporter molecules such as fluorescent dyes and non-fluorescent chromophores utilizing cleavable linkers or the formation of cleavable bonds as a reversible covalent labeling strategy. This is representatively demonstrated for different types of nano- and microparticles with different labeling densities of carboxyl, amino, and aldehyde groups. This strategy enables to separate the signal-generating molecule from the bead surface, thereby circumventing uncertainties associated with light scattering, binding-induced changes in reporter fluorescence, and fluorescence quenching dye-dye interactions on crowded material surfaces.[1-3] Moreover, the reporters are chosen to be detectable with different analytical methods as prerequisite for straightforward validation via method compari-sons and mass balances. Applications of these assays and multimodal cleavable probes range from a quantitative comparison of bead batches and process control to a qualitative prediction of the coupling efficiencies in bioconjugation reactions.
Fluorescent particles like nm- and m-sized polymeric beads doped or labeled with different types of fluorophores and nanocrystalline systems like quantum dots and upconversion phosphors emitting in the visible (vis), near-infrared (NIR), and IR (infrared) region are of increasing importance as fluorescent reporters for bioanalysis and medical diagnostics. The assessment and comparison of material performance and the development of rational design strategies for improved systems requires suitable spectroscopic tools for the determination of signal-relevant optical properties and analytical tools for the determination of the number of surface groups, ligands, biomolecules and /or fluorophores per bead. In this respect, suitable spectroscopic tools for the characterization of the optical properties of such materials like photoluminescence quantum yields and brightness values and the determination of their surface chemistry are introduced. This includes integrating sphere setups for absolute measurements of fluorescence quantum yields of liquid and solid, transparent and scattering materials in the wavelength region of 350 nm to 1600 nm at varying excitation power densities for the study of multi-photon processes and simple optical assays, validated by comparison with established analytical techniques relying on different detection principles. Here, different examples for the optical and analytical characterization of different types of nanoscale reporters are presented.
There is an increasing interest in optical reporters like semiconductor quantum dots and upconversion nanocrystals with emission > 800 nm for bioanalysis, medical diagnostics, and safety barcodes. Prerequisites for the comparison of material performance, the mechanistic understanding of nonradiative decay channels, and the rational design of new nanomaterials with improved properties are reliable fluorescence measurements and validated methods for the assessment of their surface chemistry. The latter is of special relevance for nanocrystalline emitters, where surface states and the accessibility of emissive states by quenchers largely control accomplishable photoluminescence quantum yields and hence, signal sizes and detection sensitivities from the reporter side. Here, we present the design of integrating sphere setups for the excitation power density-dependent absolute measurement of emission spectra and photoluminescence quantum yields in the wavelength region of 350 to 1600 nm and results from spectroscopic studies of semiconductor quantum dots and upconversion nanocrystals of different size and surface chemistries in various environments. Subsequently, examples for simple approaches to surface group and ligand analysis are presented.