Analytische Chemie
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- Fluorescence (6)
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- Process Analytical Technology (4)
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Organisationseinheit der BAM
- 1 Analytische Chemie; Referenzmaterialien (38)
- 8 Zerstörungsfreie Prüfung (27)
- 6 Materialchemie (18)
- 1.8 Umweltanalytik (10)
- 8.5 Röntgenbildgebung (10)
- 6.1 Oberflächen- und Dünnschichtanalyse (9)
- 1.1 Anorganische Spurenanalytik (6)
- 1.2 Biophotonik (6)
- 4 Material und Umwelt (6)
- 6.3 Strukturanalytik (6)
In mass spectrometry based proteomics, protein homology leads to
many shared peptides within and between species. This complicates
taxonomic inference. inference. We introduce PepGM, a graphical model for taxonomic profiling of viral proteomes and metaproteomic datasets.
Using the graphical model, our approach computes statistically sound
scores for taxa based on peptide scores from a previous database
search, eliminating the need for commonly used heuristics.
Introduction:
With the introduction of accurate deep learning predictors, spectral matching applications might experience a renaissance in tandem mass spectrometry (MS/MS) driven proteomics. Deep learning models, e.g., Prosit, predict complete MS/MS spectra from peptide sequences and give the unprecedented ability to accurately predict mass spectra that may arise from any given proteome. However, the amount of spectral data is enormous when querying large search spaces, e.g., metaproteomes composed of many different species.
Current spectral library search software, such as SpectraST, is not equipped to meet run time and memory constraints imposed by such large MS/MS databases, covering several millions of peptide spectrum predictions.
Methods:
Inspired by the fragment index data structure that had been introduced with MSFragger, we implement an efficient peak matching algorithm for computing spectral similarity between query and library spectra. Mistle (Metaproteomic index and spectral library search engine) uses index partitioning and SIMD (Single instruction, multiple data) intrinsics, which greatly improves speed and memory efficiency for searching large spectral libraries. Mistle is written in C++20 and highly parallelized.
Results:
We demonstrate the efficiency of Mistle on two predicted spectral libraries for the lab-assembled microbial communities 9MM and SIHUMIx. Compared to the spectral library search engine SpectraST, Mistle shows a >10-fold runtime improvement and is also faster than msSLASH, which uses locality-sensitive hashing. Although Mistle is slower than MSFragger, Mistle‘s memory footprint is an order of magnitude smaller. Furthermore, we find evidence that the spectral matching approach to predicted libraries identifies peptides with higher precision. Mistle detects peptides not found by database search via MSFragger and in turn uncovers unnoticed false discoveries among their matches.
Conclusion:
In this study, we show that predicted spectral libraries can enhance peptide identification for metaproteomics. Mistle provides the means to efficiently search large-scale spectral libraries, highlighted for the microbiota 9MM and SIHUMIx.
Ellipsometry enables the investigation of material properties over a broad spectral range. As a fast and non-destructive method, it is widely used in industry for quality assurance. Despite the wide application of ellipsometry and its high industrial relevance there are some material-specific standards and there have been no generally accepted standards dealing with model validation and measurement uncertainties. The first German standard DIN50989-1: 2018 Ellipsometry – Part1: Principles (currently international standard ISO 23131: 2021) marks the beginning of a 6-part standard series for ellipsometry, which was developed under consideration of GUM.
Per- and polyfluoroalkyl substances (PFAS) are a large group of organofluorine surfactants used in the formulations of thousands of consumer goods, including aqueous film-forming foams (AFFF) used to suppress aviation fires in training scenarios, non-stick cookware, fast-food wrappers, water-repellent fabrics, medical equipment, and plastic and leather products. As a result of the perpetual use of PFAS containing products, effluents and sewage sludge from wastewater treatment plants (WWTPs) have been observed to be an important pathway for PFAS into the environment. In Germany, phosphorus and other nutrients from sewage sludge and wastewater should be recycled in WWTPs of cities with a large population. However, it is not clear if PFAS contamination from wastewater and sewage sludge end up in novel wastewater-based fertilizers. Normally, PFAS are analyzed using PFAS protocols typically with time-consuming extraction steps and LC-MS-MS quantification. However, for screening of PFAS contaminations in sewage sludge or wastewater-based fertilizers also passive sampler based on the Diffusive Gradients in Thin-films (DGT) technique can be used for the PFAS extraction. Afterwards, combustion ion chromatography (CIC) can be applied to analyse the “total” amount of PFAS on the passive sampler. Here, we show results from the DGT method in comparison to those of the extractable organic fluorine (EOF) method for a variety of wastewater-based fertilizers. Additionally, we analysed the adsorption of PFAS on the weak anion exchanger (WAX) based DGT passive sampler binding layer by infrared and fluorine K-edge X-ray adsorption near-edge structure (XANES) spectroscopy.
Hundreds of papyrus rolls, carbonized during the 79CE eruption of Mount Vesuvius, were discovered in 1754 at Herculaneum. Sophisticated mechanical methods for unrolling the best-preserved scrolls have been applied, with varying success. However, such processes have been abandoned, to prevent risk from irremediable damage or loss and to preserve the integrity of the extremely fragile rolls. Following the development of X-ray based non-invasive techniques, attempts to virtually unroll the scrolls were made. The most common ink in Antiquity was carbon-based, and the main element of carbonized papyrus is carbon, making these investigations difficult. However, some attempts with synchrotron X-ray phase-contrast tomography (XPCT) were successful. Recently, the identification of antique inks containing metals raised hope that if some of the inks contain metal the rolls can be virtually unrolled using conventional CT- technique. We investigated the inks of a selection of partially unrolled fragments stored at the Biblioteca Nazionale di Napoli with X-ray fluorescence in order to select the best candidates for tomography. Despite the many difficulties (analysis of several layers sticking together, letters barely visible, difficulty to separate contribution from the ink and from the papyrus, inhomogeneity of the support, fragility of the fragments…), encouraging results were found, with a number of inks from Greek fragments found to contain additions to the soot (Fe, Pb, Cu P).
In this work, we present the recent in-situ imaging developments at the BAMline (of synchrotron BESSY II, HZB), focused on the in-situ characterization and understanding of microstructural evolution of additively manufactured materials subjected to different environments. Two show cases are presented. In the first, X-ray refraction radiography (SXRR) was combined with in-situ heat treatment to monitor the microstructural evolution as a function of temperature in a laser powder bed fusion (LPBF) manufactured AlSi10Mg alloy. We show that SXRR allows detecting the changes in the Si-phase morphology upon heating using statistically relevant volumes. SXRR also allows observing the growth of pores (i.e., thermally induced porosity), usually studied via X-ray computed tomography (XCT), but using much smaller fields-of-view. In the second case study, XCT was combined with in-situ tensile test to investigate the damage mechanism in a LPBF Aluminum Metal Matrix Composite (MMC). In-situ SXCT test disclosed the critical role of the defects in the failure mechanism along with pre-cracks in the reinforcement phase of MMC. We found that cracks were initiated from lack-of-fusion defects and propagated through coalescence with other defects.
Nanoparticles (NPs) have become important materials for a variety of chemical technologies, including catalysis. One of the main challenges is the reduction of green house gases, such as CO2. One opportunity besides the capturing is the conversion to synthesis gas via the reverse water-gas shift reaction.
A facile and efficient method is described for the solvothermal synthesis of size-tunable, stable, and uniform NiCu core-shell NPs. The diameter of the NPs can be tuned in a range from 6 nm to 30 nm and the Ni:Cu ratio from 30:1 to 1:1. The NPs are structurally characterized with combination of transmission electron microscopy, anomalous small-angle X-ray scattering, X-ray photoelectron spectroscopy, and X-ray absorption fine structure. Using these analytical methods, a core-shell-shell structure their chemical composition is elucidated. A depletion from the core to the shell is observed, with the core consisting of NiCu alloy, surrounded by an inner Ni-rich shell and an outer NiO shell. The SiO2-supported NiCu core-shell NPs show pronounced selectivity of >99% for CO in the catalytic reduction of CO2 to CO using hydrogen as reactant (reverse water–gas shift reaction).
The Federal Institute for Materials Research and Testing (BAM) organised an interlaboratory comparison (ILC) for the characterisation of 87Sr/86Sr isotope ratios in limestone (IAG/CGL ML-3) and Penrhyn slate (IAG OU-6) reference materials by applying the conventional method for 87Sr/86Sr isotope ratios. Samples were sent to thirteen analytical laboratories . Since both samples are powdered, rock materials, dissolution of the sample and Sr isolation via ion exchange chromatography were mandatory. This was done using acid, microwave/acid, bomb/acid digestion or borate fusion and subsequent isolation of Sr by means of commercially available ion exchange resins. In this study, we present and discuss the potential effects that differences between laboratories, and between two instrumental measurement techniques (i.e., MC-ICP-MS and MC-TIMS), may have upon the dispersion of measurement results of the 87Sr/86Sr isotope ratio in the two aforementioned reference materials. We used a statistical mixed effects model to assess the potential effects of both the laboratory and the measurement technique. Consensus values for both materials and associated standard uncertainties {(IAG/CGL ML-3 (0.708245±0.000004) mol/mol; IAG OU-6 (0.729769±0.000008) mol/mol} were estimated by fitting a linear, Gaussian mixed effects model (Pinheiro and Bates 2000) using the R function “lmer” defined in package “lme4”. The statistical results showed that there is no significant effect attributable to differences between instrumental techniques when both materials are considered together, or separately. The p-value of the test of significance of the measurement technique effect is greater than 0.54. For both materials there were statistically significant effects attributable to differences between laboratories when the measurement results for both materials were considered together and separately. This effect is less than 0.00004 in absolute value. However, for neither material did consideration or disregard for such differences induce significant changes in the estimate of the consensus value for the 87Sr/86Sr isotope ratio. Therefore, the effects attributable to differences between instrumental techniques or between laboratories can safely be disregarded when computing the best estimate for the true value of 87Sr/86Sr isotope ratio in these materials, by the community of expert laboratories represented in this study.
Mit dem zerstörungsfreien Verfahren der nuklear magnetischen Resonanz (NMR) mit Fokus auf 1H-Protonen lässt sich der Feuchtegehalt in porösen Materialien bestimmen und bei einem vollgesättigten Medium eine Porengrößenverteilung ableiten. Für die Ermittlung der Porengrößenverteilung muss die gemessene T2-Relaxationszeitenverteilung mit dem Parameter Oberflächenrelaxivität (OR) umgerechnet werden. Ist dieser Parameter für das zu untersuchende Medium unbekannt, kann dieser mithilfe von Vergleichsverfahren abgeschätzt werden. Dabei kommen z. B. Gassorption, Quecksilberporosimetrie (MIP), Dünnschliff-Mikroskopie oder µ-Computer-Tomographie (µ-CT) zum Einsatz. Da die verschiedenen Verfahren allerdings unterschiedliche Auflösungsgrenzen aufweisen und auf verschiedenen physikalischen Prinzipien beruhen, können die ermittelten ORs für ein Medium stark variieren. Um ein besseres Verständnis für die OR und die Einflüsse der Vergleichsverfahren zu bekommen, wurden 19 verschiedene Sandsteintypen untersucht. Die OR wurde zum einen basierend auf der spezifischen inneren Oberfläche aus der dynamischen Dampfsorption (DVS) und der Gassorption abgeleitet. Zum anderen wurden die Relaxationszeitenverteilungen durch manuelles Anpassen der OR derart in Porengrößenverteilungen umgerechnet, sodass es eine Übereinstimmung mit den Porengrößenverteilungen aus MIP und/oder µ-CT gibt. Die Umrechnung von Relaxationszeitverteilungen in eine Porengrößenverteilung berücksichtigt dabei sowohl fast- als auch slow-diffusion. Insgesamt ergab sich für die Sandsteine ein breites Spektrum an ORs, bei dem die über die innere spezifische Oberfläche ermittelten ORs andere Größenordnungen aufwiesen (< 10 µm/s), als bei dem Vergleich mit MIP oder µ-CT (bis 600 µm/s). Die mit MIP und µ-CT ermittelten Werten lagen dabei um einen Faktor von 1 bis 30 auseinander. Dieser umfangreiche Datensatz, der vier verschiedene Vergleichsverfahren einbezieht, soll neue Erkenntnisse in der Charakterisierung von porösen Materialien (z. B. bezüglich der Oberflächenrauigkeit) und in der Ursache für die starke Variation der OR ermöglichen. Durch das Berücksichtigen von fast- als auch slow-diffusion, können dabei sogar Daten in eine Porengrößenverteilung umgerechnet werden, bei denen das fast-diffusion-Kriterium nach Brownstein und Tarr nicht erfüllt ist. Außerdem ergibt sich aus der Berücksichtigung des slow-diffusion-Regimes ein neues Verständnis für die obere Auflösungsgrenze von NMR.
Contamination of drinking water with pharmaceuticals is an emerging problem and a potential health threat. Immunochemical methods based on the binding of the analyte to specific antibodies enable fast & cost-effective on-site analyses. Magnetic bead-based immunoassays (MBBAs) allow for implementation into an immunosensor for online testing. Particles are prepared by either coupling the analyte molecule (diclofenac) or the respective antibody (amoxicillin) to the surface. For miniaturization, detection is performed electrochemically (chronoamperometry) on a microfluidic chip. The developed immunosensor will enable detection of pharmaceuticals directly in water supply pipes.
Contamination of drinking water with pharmaceuticals is an emerging problem and a potential health threat. Immunochemical methods based on the binding of the analyte to specific antibodies enable fast & cost-effective on-site analyses. Magnetic bead-based immunoassays (MBBAs) allow for implementation into an immunosensor for online testing. Particles are prepared by either coupling the analyte molecule (diclofenac) or the respective antibody (amoxicillin) to the surface. For miniaturization, detection is performed electrochemically (chronoamperometry) on a microfluidic chip. The developed immunosensor will enable detection of pharmaceuticals directly in water supply pipes.
Thirteen laboratories participated in an international interlaboratory comparison for the determination of 87Sr/86Sr isotope ratios in four cement reference materials (RM) using the conventional method for 87Sr/86Sr isotope ratios analyses. Sample dissolution and Sr isolation via ion exchange chromatography were required since the cement samples were distributed as powders. Analytical preparation included the use of various digestion methods including mixed mineral acids, microwave/acid, bomb/acid digestion or borate fusion, followed by Sr separation using ion exchange chromatography. In this study, we evaluated whether any statistically significant differences were attributable to instrumental differences (i.e., MC-ICP-MS and MC-TIMS), or to laboratory-specific techniques (different sample preparation techniques, Sr isolation and the procedures for correcting the data outputs). To evaluate these effects, consensus values for cement RMs and associated standard uncertainties were estimated by fitting a linear, Gaussian mixed effects model using the R function “lmer” defined in package “lme4”. No statistically significant effects (SSE) attributable to instrumental differences regardless of whether the materials are considered together or separately were evident. There were SSE attributable to differences between laboratories for three cement RMs when the individual cements were considered separately. Since consideration or disregard for such differences does not induce significant changes in the estimate of the consensus values for the 87Sr/86Sr isotope ratios in cement RMs, these effects can safely be neglected when calculating the best estimates for the true values of 87Sr/86Sr isotope ratios in these RMs.
Responsible treatment of the environment and resources is a key element of sustainability. The building and construction industry is one of the largest consumers of natural resources. Consequently, there is a particular need for regulations and technologies that help to create closed material cycles. From the technological point of view, such efforts are complicated by the growing material diversity and the amount of composites contained in present and future construction and demolition waste (CDW). Nowadays, simple but proven techniques like manual sorting are mainly used. However, this practice not only poses health risks and dangers to the staff performing the work, but also relies on merely obvious, visually striking differences. Automated, sensor-based sorting of these building materials could complement or replace this practice to improve processing speed, recycling rates, sorting quality, and prevailing health conditions. The preliminary results for the identification of a wide variety of building materials with LIBS are presented.
Die Optimierung und Validierung des digitalen Wasserstofftankstellenmanagements mit Sensortechnologien ist das übergeordnete Ziel des Teilprojekts Digitale Qualitätsinfrastruktur mit Sensortechnologien (QIST) am Use Case H2, im Rahmen der digitalen Qualitätsinfrastruktur (QI digital[1]). Hierfür sollen u.a. Sensornetzwerke mit digital-gestützten Auswertungsstrategien intelligent gestaltet werden (Stichwort KI bzw. digitaler Zwilling). Verschiedene, sich ergänzende Sensoren, Systemkomponenten und KI-Methoden stehen als Bausteine intelligenter Sensorsysteme zur Verfügung, mit dem Zweck, die physikalischen und chemischen Parameter an und in Anlagen umfassend und effizient zu überwachen sowie Fehlfunktionen zuverlässig zu detektieren und zu interpretieren, Abbildung 1.
Konkrete Arbeitsschritte sind, nach dem Aufbau der Versuchsplattform „Wasserstofftankstelle“, die Instrumentierung von Sensorik und deren digitale Integration in das Tankstellenmanagementsystem sowie die Validierung im Realbetrieb. Die somit erzielten Messergebisse sowie die Messunsicherheiten, Historien und Verfahren werden in digitaler Form aufbereitet, gespeichert und fortlaufend in die KI-basierte Datenauswertung einbezogen, inkl. der Anbindung an die metrologische Rückführungskette.
Ziele sind:
• Einführung eines neuen messtechnischen Ansatzes und eines digitalen Zwillings für den Anwendungsfall "Wasserstofftankstelle" auf Basis der H2-Sensorik sowie der Zustandsgrößen Druck und Temperatur
• Qualitätssicherung durch Applikationen zuverlässiger Gassensorik, Manometer und Thermometer sowie KI-Methoden zur Prozesskontrolle und Detektion von Fehlfunktionen
• Nutzung von digitalen Kalibrierscheinen (DCCs) insbesondere für die Messgröße Temperatur zur Realisierung der metrologischen Rückführung in einer digitalen Qualitätsinfrastruktur
The residual stresses and load transfer in multiphase metal alloys and their composites (with both random planar-oriented short fibers and particles) will be shown, as studied by neutron diffraction, by X-ray computed tomography, and by a model based on the reformulation of classic Maxwell’s homogenization method.
Contrary to common understanding and state-of-the-art models, we experimentally observe that randomly oriented phases possess non-hydrostatic residual stress. Moreover, we disclose that the unreinforced matrix alloy stays under hydrostatic compression even under external uniaxial compression.
The recently developed modeling approach allows calculating the residual stress in all phases of the composites. It rationalizes the presence of deviatoric stresses accounting for the interaction of random oriented phases with fibers having preferential orientation. It also allows the explanation of the unconventional in-situ behavior of the unreinforced alloy and the prediction of the micromechanical behavior of other similar alloys.
The European Metrology Network (EMN) for Advanced Manufacturing has been established in June 2021. Currently nine EMNs focussing on different important topics of strategic importance for Europe exist and form an integral part of EURAMET, the European Association of National Metrology Institutes (NMI). EMNs are tasked to ▪ develop a high-level coordination of the metrology community in Europe in a close dialogue with the respective stakeholders (SH)
▪ develop a strategic research agenda (SRA) within their thematic areas
▪ provide contributions to the European Partnership on Metrology research programme Based on the analysis of existing metrology infrastructures and capabilities of NMIs, the metrology research needs for advanced manufacturing are identified in close cooperation with academic, governmental and industrial stakeholders.
Here, we report on the progress of the EMN for Advanced Manufacturing.
Perfluorocarboxylic acids (PFCAs) are a family of compounds that consist of a fully perfluorinated carbon backbone and a carboxylic acid moiety1. PFCAs have been classified as substances of very high concern by REACH regulations due to their persistence in the environment, non biodegradability and toxicological effects2. Thus, there is significant interest in detecting PFCAs in ground, waste, surface and drinking water. Fluorescence detection is a portable, easy-to-operate and cost-effective alternative, enabling the onsite detection of these analytes e.g., with miniaturized fluidic sensors.
Here, a guanidine benzoxadiazole (BD) dye covalently attached to a polymerizable methacrylate unit was developed for the integration of the dye into polymers and on surfaces. The response behavior of the dye toward PFCAs was assessed in monophasic (EtOAc) and biphasic (EtOAc-H2O) solvent systems, the biphasic system being advantageous for the extraction of the hydrophobic organic acids from the aqueous phase.
The BD dye was integrated into sensory silica core-polymer shell particles for the sensing of PFCAs directly in aqueous media. Submicron SiO2 particles were functionalized with 3 (trimethoxysilyl)propyl methacrylate followed by radical polymerization with the BD dye and ethylene glycol dimethacrylate. TEM images showed a homogeneous polymer shell with a thickness of 75±2 nm.
By incorporating the BD dye into core-shell particles, lower limits of detection (1.52 µM for perfluorooctanoic acid, PFOA) were achieved if compared to the use of the neat BD dye in a biphasic assay (17.3 µM for PFOA), and excellent discrimination against inorganic acids thanks to the hydrophobic polymer shell. The particle sensory platform has proven to be an alternative for the sensing of PFCAs directly in water.
Direct detection of glyphosate in water with fluorescent molecularly imprinted polymer particles
(2022)
Analysis of environmental contaminants such as pesticides is increasing in importance due to frequent detection of residues in water reserves and food stuff, as well as lowering of maximum residue levels (MRLs). Molecularly imprinted polymers (MIPs) have been developed for preconcentration of these analytes prior to analysis by chromatographic techniques [1]. MIPs are prepared by polymerization of monomers in a matrix containing the analyte, followed by extraction of the analyte to obtain binding sites that are complementary to the analyte of interest. Recently, our group developed MIPs containing fluorescent reporter molecules that can be used for direct detection and quantification of 2,4-D in contaminated water. Core/shell MIP particles were employed, consisting of sub-micron silica nanoparticles coated with a MIP shell containing a fluorescent reporter whose signal was enhanced upon binding with 2,4-D in water. A limit of detection of 20 nM was attained [2]. We present here a comparable system, composed of fluorescent core-shell MIPs for the direct analysis of pesticides in environmental samples.
We interpret solving the multi-vehicle routing problem as a team Markov game with partially observable costs. For a given set of customers to serve, the playing agents (vehicles) have the common goal to determine the team-optimal agent routes with minimal total cost. Each agent thereby observes only its own cost. Our multi-agent reinforcement learning approach, the so-called multi-agent Neural Rewriter, builds on the single-agent Neural Rewriter to solve the problem by iteratively rewriting solutions. Parallel agent action execution and partial observability require new rewriting rules for the game. We propose the introduction of a so-called pool in the system which serves as a collection point for unvisited nodes. It enables agents to act simultaneously and exchange nodes in a conflict-free manner. We realize limited disclosure of agent-specific costs by only sharing them during learning. During inference, each agents acts decentrally, solely based on its own cost. First empirical results on small problem sizes demonstrate that we reach a performance close to the employed OR-Tools benchmark which operates in the perfect cost information setting.