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Quantifizierung der Schädigung von DNA in wässriger Lösung unter direkter Elektronenbestrahlung
(2018)
Bei der Behandlung von Krebs wird Strahlentherapie zur Zerstörung von Tumorzellen eingesetzt. Der zugrunde liegende Wirkmechanismus ist die durch ionisierende Strahlung verursachte Schädigung an Biomolekülen. Dabei kommt den Schädigungsprozessen an DNA aufgrund ihrer zentralen Rolle in Mutation und Zelltod eine besondere Bedeutung zu. Durch den hohen Wasseranteil in menschlichen Zellen findet ein Großteil der inelastischen Streuprozesse an Wassermolekülen statt und führt zur deren Radiolyse. Die so entstehenden Radiolyseprodukte sind für einen Großteil des Schadens an DNA verantwortlich. Ein detailliertes Verständnis der zugrunde liegenden molekularen Interaktion ist die Voraussetzung um effizientere Therapien zu entwickeln.
Ziel dieser Arbeit ist es, die Schädigung von DNA durch ionisierende Strahlung in Abhängigkeit der inelastischen Streuevents und des Energieeintrags innerhalb des biologisch relevanten mikroskopischen Treffervolumens zu quantifizieren. Die Bestrahlungen müssen dazu in Flüssigkeit, unter Berücksichtigung der chemischen Umgebung durchgeführt werden, welche die indirekten Schäden vermittelt. Deshalb wurde eine neuartige Kombination aus Experiment und Monte- Carlo-Simulationen entworfen und angewandt. Um Elektronenbestrahlung flüssiger Lösungen innerhalb eines Rasterelektronenmikroskops zu ermöglichen, wurde ein Probenhalter mit einer für Elektronen durchlässigen Nanomembran entwickelt. So können Bestrahlungen an DNA,
Proteinen, und Zellen bei verschiedenen pH-Werten, Salzkonzentrationen oder in Anwesenheit von Kosoluten durchgeführt werden. Für ein Modellsystem aus Plasmid-DNA in Wasser wurde damit die mittlere letale Dosis aus der Kombination der experimentellen Daten, Partikelstreusimulationen (Geant4-DNA) und Diffusionsberechnungen zu D1/2 = 1.7 ± 0.3 Gy bestimmt. Aus der Konvolution der Plasmidpositionen mit dem durch Elektronenstreusimulationen bestimmten ortsaufgelösten Energieeintrag wurde dessen Häufigkeitsverteilung im Targetvolumen der
Plasmide sowie der mittlere mikroskopische letale Energieeintrag berechnet als E1/2 = 6 ± 4 eV .
Es wurde gefolgert, dass weniger als zwei Ionisationsprozesse im sensitiven Targetvolumen der DNA im Mittel zu einem Einzelstrangbruch führen. Das für mikrodosimetrische Modellierungen wichtige Verhältnis von Einzelstrangbrüchen (SSB) zu Doppelstrangbrüchen (DSB) wurde als SSB : DSB = 12 : 1 bestimmt. Die vorgestellte Methode zur Bestimmung mikroskopischer Schaden-Dosis Relationen wurde auf weitere Klassen von Bestrahlungsexperimenten verallgemeinert. Dadurch ist die Methode unabhängig von der verwandten Primärstrahlung, der Probengeometrie und den Diffusionseigenschaften der untersuchten Moleküle anwendbar. So wird eine Vergleichbarkeit experimenteller Systeme mit inhomogenen Energieverteilungen erreicht, die bei ausschließlicher Betrachtung makroskopischer, gemittelter Größen nicht gegeben ist.
Des weiteren wurden die Strahlenschutzfunktionen des kompatiblen Soluts Ectoine und sein Einfluss auf Wasser und Biomoleküle untersucht. Mittels Ramanspektroskopie wurde ein kon-zentrationsabhängiger Anstieg des Anteils der Kollektivmoden des Wassers der OH-Streckschwingungen und dessen Unabhängigkeit von der Natriumchloridkonzentration beobachtet.
Molekulardynamik-Simulationen zeigten, dass die zwitterionischen Eigenschaften zur Bildung einer half-chair Konformation Ectoines führen. Die Wasserstoffbrückenbindungen in der ersten Hydrationshülle sind signifikant stabiler und besitzen höhere Lebensdauern als das Bulk-Wasser. Bestrahlung von DNA in Anwesenheit von 1 M Ectoine führt zu einer Erhöhung der Überlebensrate um den Faktor 1,41. Die Schutzfunktion wurde auf die Erhöhung des Streuquerschnitts niederenergetischer Elektronen an den akustischen Vibrationsmoden des Wasser durch Ectoine und seine Wirkung als OH-Radikalfänger zurückgeführt. Dies wurde mittels Ramanspektroskopie und Elektronenspinresonanzmessungen (ESR) nachgewiesen.
For almost 150 years it is known that hydrogen has a deleterious effect on the mechanical properties of metallic components. Nowadays, the problem of hydrogen assisted degradation is highly relevant in energy related fields due to the massive use of steel as a structural component in these applications and its sensitivity to hydrogen. Since the discovery of hydrogen assisted cracking (HAC), researchers studied intensively and suggested possible explanations and mechanisms in order to define how hydrogen is affecting the material. In general, it is considered that hydrogen changes the mechanical properties more in terms of ductility (deformation capacities) than in strength (load capacities). Hydrogen concentration is one of three crucial factors in the degradation process, together with the microstructure of the material and the internal/external mechanical load. The relatively high concentration of hydrogen resulting in this loss of ductility can originate during production or before service (e.g. welding processes) and during service (i.e. catholically protected systems to eliminate corrosion processes in sour environments).
In parallel to the theoretical work, tremendous efforts were, and are still, invested in searching for a proper method to elucidate, map and quantify the hydrogen in the microstructure, which is the basis for this work. For steels, the focus is mainly on the observations of diffusion processes and the interaction of hydrogen with the microstructure
in regions with high local stresses/strains (for example around evolving cracks). The challenge for reaching this goal arises from the fact that accurate indication of hydrogen by means of position, unlike heavier atoms, can be made only by mass spectrometry or by interaction with another element (e.g. silver decoration, special coating and resonant nuclear reaction by nitrogen). In addition to this, the difficulty recording the hydrogen behavior while it rapidly diffuses through the material, leaving only the unpredicted failure, should be taken into account.
Although using powerful characterization methods, models and computational simulations, the key to defining the mechanisms behind HAC is still under debate and not fully understood. The relationship between material and hydrogen is determined by three factors, i.e., the material structure and microstructure – determining the physical properties, the mechanical load applied on the material and the hydrogen concentration. It is well known that in order to have a complete definition of HAC these three factors must be examined locally with the minimal scale and the maximal resolution reachable. The major gap is the lack in such a characterization method or a technique by which one has the ability to detect and observe the hydrogen in the metallic microstructure. The commonly used techniques nowadays are capable of characterization of the microstructure without the ability to observe the hydrogen distribution. Global hydrogen concentration and localized hydrogen observation are possible by some techniques which are incapable of indicating a change in the structure or microstructure therefore a comprehensive overview can be gained only by combining several methods.
In the presented research, secondary ion mass spectrometry (SIMS) was adopted as the main tool to detect and locally map the hydrogen distribution in two types of duplex stainless steel grades: EN 1.4462 (standard 2205 duplex stainless steel) and EN 1.4162 (2101 lean duplex stainless steel). The term duplex stainless steel (DSS) refers to the austenitic-ferritic microstructure of the steel where the combination of physical and mechanical properties of the two phases is achieved. The DSS was selected as a case study for this work due to the wide use of this grade in many energy and the lack of knowledge on hydrogen behavior in two-phase containing microstructures. ToFSIMS was exploited in-situ and ex-situ in three experimental approaches during or following
an electrochemical charging procedure. This type of hydrogen charging was selected as it simulated a procedure of cathodic protection of most sub-water oil and gas extraction and delivery systems. The experimental procedures were:
1. Ex-situ charging followed by ToF-SIMS imaging for basic understanding of hydrogen distribution.
2. Ex-situ charging followed by in-situ mechanical loading to obtain information on hydrogen behavior around a propagating crack.
3. In-situ permeation of hydrogen through a steel membrane inside the ToF-SIMS to obtain information on diffusion behavior of hydrogen in a two-phase microstructure.
The comprehensive view of the effect of hydrogen on steel was gained by using supplementary methods, such as high resolution scanning electron microscopy (HR-SEM), focused ion beam (FIB) and electron back-scattered diffraction (EBSD). The state of the art in this work lies in applying both: in-situ experimental approaches and data treatment of the ToF-SIMS raw data. The data treatment includes the combination of data from several sources (data fusion).
The results for the ex-situ charging followed by static sample imaging and data fusion showed that when the analyzed surface is directly exposed to the electrolyte the degradation is pronounced differently in the ferrite, austenite and interface. The degradation mechanisms in the ferrite and austenite were reflected by the formation of cracks on the surface of both, where a high concentration of hydrogen was obtained. This result supports the assumption that hydrogen is attracted to highly deformed regions. The advantage of using in-situ charging/permeation in comparison to ex-situ charging is that the effect of hydrogen on the ferrite and austenite phases when the hydrogen is evolving from within the microstructure is realized, in comparison to when the analyzed surface is initially exposed directly to the electrolyte. In both experiments the ferrite was observed as a fast diffusion path for the hydrogen. The faster diffusion of hydrogen through the ferrite is expected due to the higher diffusion coefficient, however, a direct proof for the diffusion sequence in this scale was never shown. Most significant results were achieved by the ‘core’ experiments of this research. These experiments included the design of a novel dynamic mechanical loading device to apply an external load during SIMS imaging of a hydrogen precharged-notched sample. For the first time it was shown that plastic deformation induced by applying a mechanical load is resulting in a redistribution of hydrogen locally around the notch.
One aim of this work was the development of a new setup for time- and laterally resolved XAFS measurements, based on the pronciple of dispersive XAFS. This setup is scanning free, stable, inexpensive, and straightforward to adjust for probing different elements. The second part of this work describes the impelemntation of a method for full-field X-ray fluorescence imaging with coded apertures. Expensive and complicated X-ray otpics, that are usually used for full-field imaging, are replaced with a coded aperture that consists of many pinholes drilled in an X-ray opaque material. Coded apertures are inexpensive to fabricate, energy independent and easy to use. The working principle is the same as with a pinhole camera, but the multiple holes allow a higher photon flux compared to a single pinhole or even a polycalippary optic, thus alowwing the reduction of measurement time.
In this study, nanoscopic particles of magnesium Fluoride (MgF2) and calcium fluoride (CaF2) also known as nano metal fluorides (NMFs), were evaluated for their potential to improve wood durability. Even though these fluorides are sparingly soluble, their synthesis in the form of nano-sized particles turns them into promising candidates for wood preservation. Their distinct property of low-water solubility is proposed to maintain long-lasting protection of treated wood by reducing the leaching of fluoride. Analytical methods were used to characterize the synthesized NMFs and their distribution in treated wood specimens. Transmission electron microscopy images showed that these fluoride particles are smaller than 10 nm. In nano metal fluoride (NMF) treated specimens, aggregates of these particles are uniformly distributed in the wood matrix as confirmed with scanning electron microscopy images and their corresponding energy-dispersive X-ray spectroscopy maps. The fluoride aggregates form a protective layer around the tracheid walls and block the bordered pits, thus reducing the possible flow path for water absorption into wood. This is reflected in the reduced swelling and increased hydrophobicity of wood treated with NMFs. The biocidal efficacy of NMFs was tested against brown-rot fungi (Coniophora puteanaand Rhodonia placenta), white-rot fungus (Trametes versicolor), and termites (Coptotermes formosanus). The fungal and termite tests were performed in accordance with the EN 113 (1996) and EN 117 (2012) standards, respectively. Prior to fungal tests, the NMF treated wood specimens were leached according to the EN 84 (1997)standard. Compared to untreated specimens, the NMF treated wood specimens have a higher resistance to decay caused by brown-rot fungi, white-rot fungus, and termites. Although all NMF treatments in wood reduce the mass loss caused by fungal decay, only the combined treatment of MgF2 and CaF2 has efficacy against both brown-rot fungi and white-rot fungus. Similarly, wood treated with the combined NMF formulation is the least susceptible to attack by C. formosanus.It is proposed that combining MgF2 and CaF2changes their overall solubility to promote the release of fluoride ions at the optimal concentration needed for biocidal efficacy against fungi and termites. In this thesis, it was proven that even after leaching, sufficient fluoride was present to protect NMF treated wood from fungal decay. This shows that NMFs are robust enough for above ground contact outdoor applications of wood, where permanent wetness cannot be avoided according to Use Class 3.2, as per the EN 335 (2013) standard. Also, they pose a low risk to human health and the environment because they are sparingly soluble. Since NMFs significantly reduce the decay of wood, the CO2 fixed in it will be retained for longer than in unpreserved wood. Overall, the novel results of this study show the potential of NMFs to increase the service life of building materials made from non-durable wood.
Even though we often do not knowingly recognize them, nanoparticles are present these days in most areas of our daily life, including food and its packaging, medicine, pharmaceuticals, cosmetics, pigments as well as electronic products, such as computer screens. The majority of these particles exhibits a core-shell morphology either intendedly or unintendedly. For the purpose of practicability, this core-shell nanoparticle (CSNP) morphology is often assumed to be ideal, namely a spherical core fully encapsulated by a shell of homogeneous thickness with a sharp interface between core and shell material. It is furthermore widely presumed that all nanoparticles in the sample possess the same shell thickness. As a matter of fact, most real CSNPs deviate in several ways from this ideal model with quite often severe impact on how efficiently they perform in a specific application.
The topic of this cumulative PhD thesis is the accurate characterization of the actual morphology of CSNPs by advanced X-ray analytical techniques, namely X-ray photoelectron spectroscopy (XPS) and scanning transmission X-ray microscopy (STXM). A special focus is on CSNPs which deviate from an ideal core-shell morphology. In the paper from 2019 nanoparticle shell thicknesses are extracted from the elastic-peak intensities in an XPS spectrum based on an ideal particle morphology. This happens for a series of CSNP samples comprising a poly(tetrafluoroethylene) (PTFE) core and either a poly(methyl methacrylate) (PMMA) or polystyrene (PS) shell. The same paper as well as the paper from 2020 demonstrate for the first time, that the analysis of the inelastic background in an XPS spectrum of CSNPs can identify and quantify the heterogeneity of the shell and the incomplete encapsulation of the core.
The result from an XPS experiment is always an average across a large nanoparticle ensemble. Deviations from an ideal morphology within a single particle of the sample cannot be assessed separately. As opposed to that, a spatial resolution of 35 nm enables STXM to visualize the interior of single CSNPs which exhibit a sufficient X-ray absorption contrast between core and shell material. In the paper from 2018 a STXM analysis is demonstrated based on the example of the PTFE-PS CSNP samples already mentioned in the previous paragraph.
In the publication from 2021 (Ca/Sr)F₂ core-shell like nanoparticle ensembles for the practical use in, among others, antireflective coatings are investigated. These nanoparticles do not possess a sharp interface between core and shell material, which is why a shell thickness determination as described in the second paragraph is inappropriate. Instead, in-depth profiles of the chemical composition are obtained by XPS experiments based on synchrotron radiation with variable X-ray photon energy to elucidate the internal morphology of the particles. Additionally, theoretical in-depth profiles of Ca and Sr XPS peak intensities are simulated, in order to facilitate the interpretation of the experiments. Thus, an enrichment of CaF₂ at the particle surface was determined, which could hardly have been assessed by any other analytical technique. Because this kind of non-destructive depth profiling by XPS is very demanding, more than usual effort is spent on gapless documentation of the experiments to ensure full reproducibility.
Due to the vast diversity of nanoparticles differing in material, composition and shape, a measurement procedure cannot unalteredly be transferred from one sample to another. Nevertheless, because the papers in this thesis present a greater depth of reporting on the experiments than comparable publications, they constitute an important guidance for other scientists on how to obtain meaningful information about CSNPs from surface analysis.