Analytische Chemie
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Learned block iterative shrinkage thresholding algorithm for photothermal super resolution imaging
(2020)
Block-sparse regularization is already well-known in active thermal imaging and is used for multiple measurement based inverse problems. The main bottleneck of this method is the choice of regularization parameters which differs for each experiment. To avoid time-consuming manually selected regularization parameters, we propose a learned block-sparse optimization approach using an iterative algorithm unfolded into a deep neural network. More precisely, we show the benefits of using a learned block iterative shrinkage thresholding algorithm that is able to learn the choice of regularization parameters. In addition, this algorithm enables the determination of a suitable weight matrix to solve the underlying inverse problem. Therefore, in this paper we present the algorithm and compare it with state of the art block iterative shrinkage thresholding using synthetically generated test data and experimental test data from active thermography for defect reconstruction. Our results show that the use of the learned block-sparse optimization approach provides smaller normalized mean square errors for a small fixed number of iterations than without learning. Thus, this new approach allows to improve the convergence speed and only needs a few iterations to generate accurate defect reconstruction in photothermal super resolution imaging.
The quantitative analysis of microstructural features is a key to understanding the micromechanical behavior of metal matrix composites (MMCs), which is a premise for their use in practice. Herein, a 3D microstructural characterization of a five-phase MMC is performed by synchrotron X-ray computed tomography (SXCT). A workflow for advanced deep learning-based segmentation of all individual phases in SXCT data is shown using a fully convolutional neural network with U-net architecture. High segmentation accuracy is achieved with a small amount of training data. This enables extracting unprecedently precise microstructural parameters (e.g., volume fractions and particle shapes) to be input, e.g., in micromechanical models.
This paper presents deep unfolding neural networks to handle inverse problems in photothermal radiometry enabling super resolution (SR) imaging. Photothermal imaging is a well-known technique in active thermography for nondestructive inspection of defects in materials such as metals or composites. A grand challenge of active thermography is to overcome the spatial resolution limitation imposed by heat diffusion in order to accurately resolve each defect. The photothermal SR approach enables to extract high-frequency spatial components based on the deconvolution with the thermal point spread function. However, stable deconvolution can only be achieved by using the sparse structure of defect patterns, which often requires tedious, hand-crafted tuning of hyperparameters and results in computationally intensive algorithms. On this account, Photothermal-SR-Net is proposed in this paper, which performs deconvolution by deep unfolding considering the underlying physics. This enables to super resolve 2D thermal images for nondestructive testing with a substantially improved convergence rate. Since defects appear sparsely in materials, Photothermal-SR-Net applies trained blocksparsity thresholding to the acquired thermal images in each convolutional layer. The performance of the proposed approach is evaluated and discussed using various deep unfolding and thresholding approaches applied to 2D thermal images. Subsequently, studies are conducted on how to increase the reconstruction quality and the computational performance of Photothermal-SR-Net is evaluated.
Thereby, it was found that the computing time for creating high-resolution images could be significantly reduced without decreasing the reconstruction quality by using pixel binning as a preprocessing step.
Mass spectrometry-based proteomics provides a holistic snapshot of the entire protein set of living cells on a molecular level. Currently, only a few deep learning approaches exist that involve peptide fragmentation spectra, which represent partial sequence information of proteins. Commonly, these approaches lack the ability to characterize less studied or even unknown patterns in spectra because of their use of explicit domain knowledge. Here, to elevate unrestricted learning from spectra, we introduce ‘ad hoc learning of fragmentation’ (AHLF), a deep learning model that is end-to-end trained on 19.2 million spectra from several phosphoproteomic datasets. AHLF is interpretable, and we show that peak-level feature importance values and pairwise interactions between peaks are in line with corresponding peptide fragments. We demonstrate our approach by detecting post-translational modifications, specifically protein phosphorylation based on only the fragmentation spectrum without a database search. AHLF increases the area under the receiver operating characteristic curve (AUC) by an average of 9.4% on recent phosphoproteomic data compared with the current state of the art on this task. Furthermore, use of AHLF in rescoring search results increases the number of phosphopeptide identifications by a margin of up to 15.1% at a constant false discovery rate. To show the broad applicability of AHLF, we use transfer learning to also detect cross-linked peptides, as used in protein structure analysis, with an AUC of up to 94%.
Gas distribution mapping (GDM) is a valuable tool for monitoring the distribution of gases in various applications, including environmental monitoring, emergency response, and industrial safety. While GDM is actively researched in the scope of gas-sensitive mobile robots (Mobile Robot Olfaction), there is a potential for broader applications utilizing sensor networks. This presentation gives an overview of the different approaches to GDM and motivate the use of a deep-neural network-based approach. As access to ground truth representations of gas distributions remains a challenge in GDM research, an approach for the simulation of realistic-shaped synthetic gas plumes is described, which was used for training Gas Distribution Decoder, a deep neural network for spatial interpolation of spatially sparse gas measurements.