Analytische Chemie
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Aflatoxins, a group of structurally related mycotoxins, are well known for their
toxic and carcinogenic effects in humans and animals. Aflatoxin derivatives and protein
conjugates are needed for diverse analytical applications. This work describes a reliable
and fast synthesis of novel aflatoxin derivatives, purification by preparative HPLC and
characterisation by ESI-MS and one- and two-dimensional NMR. Novel aflatoxin bovine
serum albumin conjugates were prepared and characterised by UV absorption and
MALDI-MS. These aflatoxin protein conjugates are potentially interesting as immunogens
for the generation of aflatoxin selective antibodies with novel specificities.
The demand for sensitive and cost-effective diagnostics Analysis is steadily increasing.
Addressable immunoarrays based on matching oligo-deoxynucleotide (ODN) strands have been described before 1,2. Short ODNs (e.g. 10 mers) could be used for addressing but are not stable enough to resist washing steps which lead to a sensitivity reduction.
The demand for sensitive and cost-effective diagnostic tools is steadily increasing. Short ODNs (e.g. 10mers) could be used for addressable immunoarrays 1,2 but are not stable enough to resist washing steps which lead to a sensitivity reduction. Our aim is to establish a new platform for addressable immuno-arrays using shorter ODNs by increasing their stability via covalent linking. The main strategy consisted in the use of furan-modified ODNs that can be selectively oxidized leading to the formation of a site-specific interstrand cross-link (ICL)
Comparison of the surface plasmon resonance (SPR) response shows successful ICL of short DNA duplex on surface. After ICL formation only the binding of the cross-linked DNA duplex with the recognition antibody is stable after regeneration using Na2CO3 (Fig. 1).
Figure1. Method for detection of DNA ICL formation using an FITC labeled ODN and an anti-FITC antibody as model system a) Hybridized ODNs are efficiently separated after using Na2CO3 for regeneration b) Oxidation of the furan using 1O2 results in the formation of a stable ICL, which makes the short ODN duplex stable after regeneration
The design of bright and functional dye–protein conjugates requires hydrophilic and stable fluorophores with high molar absorption coefficients and high fluorescence quantum yields,which must not be prone to dimerization, as well as conservation of protein function and suppression of protein association. Although many synthetic dyes meet these needs, the influence of dye charge on bioconjugate performance is commonly neglected. This encouraged us to assess the spectroscopic properties, antibody functionality, binding behavior, folding, and association of conjugates of the therapeutic antibodies trastuzumab and cetuximab with the red cyanine dyes S0586, S2381,and 6SIDCC (bearing two, three, and six sulfonate Groups respectively.
Our results demonstrate a negligible effect of dye labeling on antibody folding, yet a strong influence of Label charge and density on antibody isoelectric points and association.Especially 6SIDCC decreased strongly the isoelectric points of both antibodies and their heavy or light chains even at low labeling degrees, thus favoring protein association. Although an increasingly negative dye charge reduces Antigen affinity as shown in a competitive immunoassay, all conjugates still bound to cells overexpressing the target of the respective antibody. Obviously, dyes that cause minimum dimerization with a small number of charged groups are best for conjugate brightness, minimum protein association, and strong target binding. This underlines the need to consider dye Charge for the rational design of conjugates with Optimum performance.
Pharmacologically active compounds are omnipresent in contemporary daily life, in our food and in our environment. The fast and easy quantification of those substances is becoming a subject of global importance. The fluorescence polarization immunoassay (FPIA) is a homogeneous mix-and-read format and a suitable tool for this purpose that offers a high sample throughput. Yet, the applicability to complex matrices can be limited by possible interaction of matrix compounds with antibodies or tracer.
Caffeine is one of the most frequently consumed pharmacologically active compounds and is present in a large variety of consumer products, including beverages and cosmetics. Adverse health effects of high caffeine concentrations especially for pregnant women are under discussion. Therefore, and due to legal regulations, caffeine should be monitored. Automated FPIA measurements enabled the precise and accurate quantification of caffeine in beverages and cosmetics within 2 min. Samples could be highly diluted before analysis due to high assay sensitivity in the low μg/L range. Therefore, no matrix effects were observed.
The antiepileptic drug carbamazepine (CBZ) is discussed as a marker for the elimination efficiency of wastewater treatment plants and the dispersion of their respective effluents in surface water. The development of a FPIA for CBZ included the synthesis and evaluation of different tracers. Using the optimum tracer CBZ-triglycine-5-(aminoacetamido) fluorescein, CBZ concentrations in surface waters could be measured on different platforms: one sample within 4 min in tubes or 24 samples within 20 min on microtiter plates (MTPs). For this study, a commercially available antibody was used, which led to overestimations with recovery rates up to 140% due to high cross-reactivities towards CBZ metabolites and other pharmaceuticals.
For more accurate CBZ determination, a new monoclonal antibody was produced. In this attempt, methods for improving the monitoring during the production process were successfully applied, including feces screening and cell culture supernatant screening with FPIA. The new monoclonal antibody is highly specific for CBZ and showed mostly negligible cross-reactivities towards environmentally relevant compounds. Measurements at non-equilibrium state improved the sensitivity and selectivity of the developed FPIA due to slow binding kinetics of the new antibody. Additionally, this measure enables for CBZ determination over a measurement range of almost three orders of magnitude. The comprehensively characterized antibody was successfully applied for the development of sensitive homogeneous and heterogeneous immunoassays.
The new antibody made the development of an on-site measurement system for the determination of CBZ in wastewater possible. After comprehensive optimization, this automated FPIA platform allows the precise quantification of CBZ in wastewater samples only pre-treated by filtration within 16 min. Recovery rates of 61 to 104% were observed. Measurements in the low μg/L range are possible without the application of tedious sample preparation techniques.
Different FPIA platforms including MTPs, cuvettes and tubes were successfully applied. For the choice of the right format, the application field should be considered, e.g. desired sample throughput, usage for optimization or characterization of antibodies or if a set-up for routine measurements is sought for. For high sample throughput and optimization, FPIA performance on MTPs is advantageous. The best results for the application to real samples were obtained using kinetic FP measurements in cuvettes.
Despite their immense and rapidly increasing
importance as analytical tools or therapeutic drugs, the detailed
structural features of particular monoclonal antibodies are
widely unknown. Here, an antibody already in use for diagnostic
purposes and for molecular dosimetry studies in cancer therapy
with very high affinity and specificity for cisplatin-induced DNA
modifications was studied extensively. The molecular structure
and modifications as well as the antigen specificity were
investigated mainly by mass spectrometry. Using nano electrospray
ionization mass spectrometry, it was possible to characterize the antibody in its native state. Tandem-MS experiments not
only revealed specific fragments but also gave information on the molecular structure. The detailed primary structure was further
elucidated by proteolytic treatment with a selection of enzymes and high resolution tandem-MS. The data were validated by
comparison with known antibody sequences. Then, the complex glycan structures bound to the antibody were characterized in
all detail. The Fc-bound oligosaccharides were released enzymatically and studied by matrix-assisted laser desorption/ionization
mass spectrometry. Overall 16 different major glycan structures were identified. The binding specificity of the antibody was
investigated by applying synthetic single and double stranded DNA oligomers harboring distinct Pt adducts. The antibody−
antigen complexes were analyzed by mass spectrometry under native conditions. The stability of the complex with double
stranded DNA was also investigated.
Referee Report 06 March 2017
(2017)
A method for the examination of the epitope of a monoclonal antibody against a peptide related to hepcidin-25, known as a biomarker in the ion metabolism, was developed. Characterizing the exact binding site helps to understand the properties of the antibody. A peptide consists of different amino acids, each contributing differently to the binding strength. To examine the influence of the amino acids, each amino acid was subsequently exchanged by glycine. If the respective amino acid is critical for binding to the antibody, a significant drop in the binding affinity should be observed.
The epitope screening of monoclonal antibodies is a complex and elaborate procedure. For this approach, variants of the peptides were synthesized by conventional Fmoc-based peptide synthesis. The solid support was chosen to be suitable for the synthesis and additional screening against the antibody. To determine the binding affinity, the bead-bound peptides were incubated with a fluorophore-labeled antibody. After the incubation, the beads were placed on a slide and the fluorescence was detected by a fluorescence scanner. A high fluorescence indicates a high binding affinity and vice versa.
Quantitative analysis of complex proteins is a challenging task in modern bioanalytical chemistry. Commonly available isotope labels are still suffering from limitations and drawbacks, whereas new metal labels open numerous possibilities in mass spectrometric analyses. In this work, we have developed a newmetal labeling strategy to tag glycan structures of proteins, more particularly antibodies. The oligosaccharide glycans were selectively trimmed to the last N-acetylglucosamine to which an artificial azide containing galactose residue was bound. This azide can be used for subsequent cycloaddition of an alkyne. Therefore, we developed a lanthanide-containing macrocyclic reagent to selectively connect to this azido galactose. In summary, the glycan structures of an antibody can be labeled with a metal functionality using this approach. Furthermore, the functionality of the antibodies can be fully maintained by labeling the Fc glycans instead of using labeling reagents that target amino or thiol groups. This approach enables the possibility of using elemental, besides molecular mass spectrometry, for quantitative analyses or imaging experiments of antibodies in complex biological samples.