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Protein immobilization for the functionalization of particles is used in various applications, including biosensors, lateral-flow immunoassays (LFIA), bead-based assays, and others. Common methods for the quantification of bound protein are measuring protein in the supernatant before and after coating and calculating the difference. This popular approach has the potential for a significant overestimation of the amount of immobilized protein since layers not directly bound to the surface (soft protein corona) are usually lost during washing and handling. Only the layer directly bound to the surface (hard corona) can be used in subsequent assays. A simplified amino acid analysis method based on acidic hydrolysis and RP-HPLC-FLD of tyrosine and phenylalanine (aromatic amino acid analysis, AAAA) is proposed to directly quantify protein bound to the surface of gold nano- and latex microparticles. The results are compared with indirect methods such as colorimetric protein assays, such as Bradford, bicinchoninic acid (BCA), as well as AAAA of the supernatant. For both particle types, these indirect quantification techniques show a protein overestimation of up to 1700% compared to the direct AAAA measurements. In addition, protein coating on latex particles was performed both passively through adsorption and covalently through EDC/sulfo-NHS chemistry. Our results showed no difference between the immobilization methodologies. This finding suggests that usual protein determination methods are no unambiguous proof of a covalent conjugation on particles or beads.
The fourth dataset dedicated to the Open Guided Waves platform presented in this work aims at a carbon fiber composite plate with an additional omega stringer at constant temperature conditions. The dataset provides full ultrasonic guided wavefields. Two types of signals were used for guided wave excitation, namely chirp signal and tone-burst signal. The chirp signal had a frequency range of 20-500kHz. The tone-burst signals had a form of sine modulated by Hann window with 5 cycles and carrier frequencies 16.5kHz, 50kHz, 100kHz, 200kHz, 300kHz. The piezoceramic actuator used for this purpose was attached to the center of the stringer side surface of the core plate. Three scenarios are provided with this setup: (1) wavefield measurements without damage, (2) wavefield measurements with a local stringer debond and (3) wavefield measurements with a large stringer debond. The defects were caused by impacts performed from the backside of the plate. As result, the stringer feet debonds locally which was verified with conventional ultrasound measurements.
MALDI-TOF-MS-based identification of monoclonal murine anti-SARS-CoV-2 antibodies within one hour
(2022)
During the SARS-CoV-2 pandemic, many virus-binding monoclonal antibodies have been developed for clinical and diagnostic purposes. This underlines the importance of antibodies as universal bioanalytical reagents. However, little attention is given to the reproducibility crisis that scientific studies are still facing to date. In a recent study, not even half of all research antibodies mentioned in publications could be identified at all. This should spark more efforts in the search for practical solutions for the traceability of antibodies. For this purpose, we used thirty-five monoclonal antibodies against SARS-CoV-2 to demonstrate how sequence-independent antibody identification can be achieved by simple means applied onto the protein. First, we examined the intact and light chain masses of the antibodies relative to the reference material NIST-mAb 8671. Already half of the antibodies could be identified based solely on these two parameters. In addition, we developed two complementary peptide mass fingerprinting methods with MALDI-TOF-MS that can be performed in 45 minutes and had a combined sequence coverage of over 80%. One method is based on the partial acidic hydrolysis of the protein by 5 mM of sulfuric acid at 99 °C. Furthermore, we established a fast way for a tryptic digest without an alkylation step. We were able to show that the distinction of clones is possible simply by a brief visual comparison of the mass spectra. In this work, two clones originating from the same immunization gave the same fingerprints. Later, a hybridoma sequencing confirmed the sequence identity of these sister clones. In order to automate the spectral comparison for larger libraries of antibodies, we developed the online software ABID 2.0 (https://gets.shinyapps.io/ABID/). This open-source software determines the number of matching peptides in the fingerprint spectra. We propose that publications and other documents critically relying on monoclonal antibodies with unknown amino acid sequences should include at least one antibody fingerprint. By fingerprinting an antibody in question, its identity can be confirmed by comparison with a library spectrum at any time and context.
The fabrication of nanostructures with ever-decreasing sizes has increased the demand of suitable characterization methods which allow to determine their shape and size at the true nanoscale, and similarly important, enable the investigation of their optical properties beyond the diffraction limit. Due to its high spectral and spatial resolution down to the (sub-) nanometer range, electron beam-based techniques, namely cathodoluminescence (CL) has become a powerful characterization tool, particularly to study plasmonic and dielectric nanostructures. However, the interpretation of the resulting spectral CL maps is not always unambiguously straightforward.
In this work, Mie resonances in single Si nanospheres of different sizes have been systematically studied, using experimental CL spectroscopy and an analytical CL model. For smaller spheres (r ~ 75 nm), the eigenmodes can be unequivocally identified, with relative changes in intensity of the electric and magnetic dipole depending on the electron beam position within the sphere. However, in larger spheres (r ~ 105 nm), the modal assignment becomes increasingly difficult due to a larger number of Mie modes in the visible spectral range. Additionally, penetrating electron beams generate two radiating dipoles at the two Si interfaces – due to the electron and its image charge collapsing at those interfaces – which can, depending on the electron beam’s velocity and its path length inside the particle, produce distinct resonances or dips (constructive or destructive interference of those two radiative dipoles). It is demonstrated that superimposed on the eigenmodes of the studied nanospheres, these resonances can distort the recorded spectrum and lead to potentially erroneous assignment of modal characters to the spectral features. An intuitive analogy is developed to unambiguously distinguish those resonance induced by transition radiation from the nanoparticle-specific Mie resonances.
Quantitative proteomics is a growing research area and one of the most important tools in the life sciences. Well-characterized and quantified protein standards are needed to achieve accurate and reliable results. However, only a limited number of sufficiently characterized protein standards are currently available. To fill this gap, a method for traceable protein quantification using sulfur isotope dilution inductively coupled plasma mass spectrometry (ICP-MS) was developed in this study.
Gel filtration and membrane filtration were tested for the separation of non-protein-bound sulfur in the protein solution.
Membrane filtration demonstrated a better performance due to the lower workload and the very low sulfur blanks of 11 ng, making it well suited for high-purity proteins such as NIST SRM 927, a bovine serum albumin (BSA). The method development was accomplished with NIST SRM 927e and a commercial avidin. The quantified mass fraction of NIST SRM 927e agreed very well with the certified value and showed similar uncertainties (3.6%) as established methods while requiring less sample preparation and no species-specific standards. Finally, the developed procedure was applied to the tau protein, which is a biomarker for a group of neurodegenerative diseases denoted “tauopathies” including, e.g., Alzheimer’s disease and frontotemporal dementia. For the absolute quantification of tau in the brain of transgenic mice overexpressing human tau, a well-defined calibration standard was needed. Therefore, a pure tau solution was quantified, yielding a protein mass fraction of (0.328 ± 0.036) g/kg, which was confirmed by amino acid analysis.
In current Li-ion batteries electrode materials consist typically of inorganic materials, such as LiCoO2, LiNixCoyMn1-zO2, LiFePO4, Li4Ti5O12. These materials struggle with toxicity or limited mineral resources, making them expensive. Therefore, eco-friendly, sustainable, and low-cost alternatives are researched for in recent years. A series of organic compounds were investigated as electrode materials for alkali-ion batteries. Among them organic carbonyl-based materials show reversible storage of lithium- or sodium-ions. Metal terephthalates stand out with their easy synthesis, moderate operational voltage and enhanced dissolution stability compared to other organic compounds. One degradation pathway consists of the dissolution of the electrode material by HF, formed in a side reaction by water and the fluorous electrolyte. Fluorinated metal terephthalates could offer higher dissolution stability against HF and less contamination by water due to their increased hydrophobicity.
The goal of this project is the synthesis and the investigation of the formation mechanism of a series of calcium-based MOFs with increasing fluorine content. For this purpose, we aimed for the construction of calcium-based MOFs with terephthalic acid (H2-pBDC), 2-fluoro-terephthalic acid (H2-2F-pBDC), 2,3,4,5-tetrafluoroterephthalic acid (H2-pBDC-F4), isophthalic acid (H2-mBDC) and 5-fluoro-isophthalic acid (H2-5F-mBDC).
Traceable determination of non-static XCT machine geometry: New developments and case studies
(2022)
It is fundamental to determine the machine geometry accurately for dimensional X-ray computed tomography (XCT) measurements. When performing high-accuracy scans, compensation of a non-static geometry, e.g. due to rotary axis errors or drift, might become necessary. Here we provide an overview of methods to determine and account for such deviations on a per projection basis. They include characterisation of stage error motions, in situ geometry measurements, numerical simulations, and reconstruction-based optimization relying on image quality metrics and will be discussed in terms of their metrological performance. Since a radiographic calibration is always required to provide an initial absolute geometry, this method will be presented as well. The improvements of the XCT geometry correction methods are presented by means of case studies. The methods can be applied individually or in combination and are intended to provide a toolbox for XCT geometry compensation.
A software toolbox is introduced that addresses several needs common to computed tomography (CT). Built for the WIPANO CTSimU project to serve as the reference implementation for its image processing and evaluation tasks, it provides a Python 3 interface that is adaptable to many conceivable applications. Foremost, the toolbox features a pipeline architecture for sequential 2D image processing tasks, such as flat field corrections and image binning, and enables the user to create their own processing modules. Beyond that, it provides means to measure line profiles and image quality assessment algorithms to calculate modulation transfer functions (MTF) or to determine the interpolated basic spatial resolution (iSRb) using a duplex wire image. It can also be used to calculate projection matrices for the reconstruction of scans with arbitrary industrial CT geometries and trajectories. The CTSimU project defined a framework of projection- and volume-based test scenarios for the qualification of radiographic simulation software towards its use in dimensional metrology. The toolbox implements the necessary evaluation routines and generates reports for all projection-based tests.
Development of an Accurate and Robust Air-Coupled Ultrasonic Time-of-Flight Measurement Technique
(2022)
Ultrasonic time-of-flight (ToF) measurements enable the non-destructive characterization of material parameters as well as the reconstruction of scatterers inside a specimen. The time-consuming and potentially damaging procedure of applying a liquid couplant between specimen and transducer can be avoided by using air-coupled ultrasound. However, to obtain accurate ToF results, the waveform and travel time of the acoustic signal through the air, which are influenced by the ambient conditions, need to be considered. The placement of microphones as signal receivers is restricted to locations where they do not affect the sound field. This study presents a novel method for in-air ranging and ToF determination that is non-invasive and robust to changing ambient conditions or waveform variations. The in-air travel time was determined by utilizing the azimuthal directivity of a laser Doppler vibrometer operated in refracto-vibrometry (RV) mode. The time of entry of the acoustic signal was determined using the autocorrelation of the RV signal. The same signal was further used as a reference for determining the ToF through the specimen in transmission mode via cross-correlation. The derived signal processing procedure was verified in experiments on a polyamide specimen. Here, a ranging accuracy of <0.1 mm and a transmission ToF accuracy of 0.3μs were achieved. Thus, the proposed method enables fast and accurate non-invasive ToF measurements that do not require knowledge about transducer characteristics or ambient conditions.
Stability, dissolution, and cytotoxicity of NaYF4‑upconversion nanoparticles with different coatings
(2022)
Upconversion nanoparticles (UCNPs) have attracted considerable attention owing to their unique photophysical properties. Their utilization in biomedical applications depends on the understanding of their transformations under physiological conditions and their potential toxicity. In this study, NaYF4: Yb,Er UCNPs, widely used for luminescence and photophysical studies, were modified with a set of four different coordinatively bound surface ligands, i.e., citrate, alendronate (AA), ethylendiamine tetra(methylene phosphonate) (EDTMP), and poly(maleic anhydride-alt-1-octadecene) (PMAO), as well as silica coatings with two different thicknesses. Subsequently, the aging-induced release of fluoride ions in water and cell culture media and their cytotoxic profile to human keratinocytes were assessed in parallel to the cytotoxic evaluation of the ligands, sodium fluoride and the lanthanide ions. The cytotoxicity studies of UCNPs with different surface modifications demonstrated the good biocompatibility of EDTMP-UCNPs and PMAO-UCNPs, which is in line with the low amount of fluoride ions released from these samples. An efficient prevention of UCNP dissolution and release of cytotoxic ions, as well as low cytotoxicity was also observed for UCNPs with a sufficiently thick silica shell. Overall, our results provide new insights into the
understanding of the contribution of surface chemistry to the stability, dissolution behavior, and cytotoxicity of UCNPs. Altogether, the results obtained are highly important for future applications of UCNPs in the life sciences and bioimaging studies.