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- GERG-2008 equation of state (9)
- Density measurements (3)
- ABC transporter (2)
- Binary mixture (2)
- Binding thermodynamics (2)
- Density (2)
- Hydrogen-enriched natural gas (2)
- Periplasmic binding protein (2)
- Replica-exchange metadynamics (2)
- Secondary transporter (2)
- Transmission function (2)
- Volumetric data (2)
- X-ray photoelectron spectroscopy (2)
- Accelerator mass spectrometry (1)
- Binary mixtures (1)
- Biofilm (1)
- Calibration (1)
- Coal mine methane (1)
- Cosmogenic nuclide exposure dating (1)
- Cosmogenic nuclides (TCN) (1)
- Density data (1)
- EURAMET.QM-K111 (1)
- Fungi (1)
- Gas mixtures (1)
- Glazed tiles (1)
- Gravimetric preparation (1)
- Helium (1)
- Hydrogen-containing mixture (1)
- Intensity scale calibration (1)
- Liquefied natural gas (1)
- Low-density polyethylene (1)
- Low-density polyethylene (LDPE) (1)
- Methane (1)
- Mutual calibration (1)
- Natural gas-type mixtures (1)
- Propane in nitrogen (1)
- Reference spectra (1)
- Single sinker densimeter (1)
- Single-sinker densimeter (1)
- Terrestrial cosmogenic nuclides (TCN) (1)
- Thermodynamic data (1)
- Thickness measurements (1)
- Virial coefficient (1)
- X-ray Photoelectron Spectroscopy (1)
- nm films (1)
Organisationseinheit der BAM
A method for the analysis of Pt–protein complexes in biological samples, previously subjected to cisplatin treatment, has been developed. Proteins were separated by gel electrophoresis, and those bound to Pt were detected with high sensitivity by LA-ICP-(SF)-MS. Pt-containing spots were in-gel digested with trypsin, and the peptides produced identified using nHPLC-ESI-LTQ-FT-MS/MS. The influence of protein separation conditions, staining and gel processing prior to laser ablation on Ptprotein bonds preservation have been evaluated using standard proteins incubated with cisplatin. 2-DE separation under non-reducing conditions followed by either Coomassie blue brilliant or silver staining is appropriate for Pt–protein complexes, achieving a good separating resolution of the proteins in biological samples. Direct LA-ICP-MS analysis of glycerol-treated dried gels for Pt–protein monitoring resulted in better sensitivity, more reliable relative Pt signals and a simpler and less time-consuming approach compared to the analysis of blotted membranes. Ablation of gels allowed tackling protein identification of Pt-spots in the remaining non-ablated material in the gel, making it unnecessary to run several gels in parallel for separate Pt detection and protein identification. By using this approach, Pt coordinated to proteins, such as α-2-macroglobulin, transferrin, albumin or hemoglobin, was detected in the serum from a rat treated in vivo with cisplatin after nrSDS-PAGE separation. Furthermore, the first complete LA-ICP-MS metalloprotein contour map in a 2-DE gel has been produced, in this case for the detection of Pt–protein complexes in renal proximal tubule epithelial cells (RPTECs) incubated with cisplatin. Several proteins were identified in those spots containing Pt, which may have a connection with the drug-induced nephrotoxicity mainly affecting this cell type in the kidney.
The experimental density data of the binary System nitrogen−hydrogen available at the time of the development of the equation of state for natural gases and related mixtures, GERG-2008, were limited to hydrogen contents higher than 0.15 (amount-of-substance fraction) and temperatures above 270 K. This work provides accurate experimental (p, ρ, T) data for three binary mixtures of nitrogen and hydrogen: (0.95 N2 + 0.05 H2), (0.90 N2 + 0.10 H2), and (0.50 N2 + 0.50 H2) at temperatures of 240, 250, 260, 275, 300, 325, and 350 K, thus extending the range of available experimental data to low hydrogen contents and low temperatures. The density measurements were performed by using a single-sinker densimeter with magnetic suspension coupling at pressures up to 20 MPa. Experimental data were compared with the corresponding densities calculated from the GERG-2008 and the AGA8-DC92 equations of state. The relative deviations of the experimental data from both equations of state were within the estimated uncertainty value of the equations. Therefore, the experimental data agree very well with the values estimated from the equations. The virial coefficients B(T,x), C(T,x), and D(T,x) as well as the second interaction virial coefficient B12(T) for the nitrogen−hydrogen binary system were also calculated from the experimental data set at temperatures from 240 to 350 K. The resulting values agree with those from literature.
A pilot study for the thickness measurement of HfO2 films was performed by the Surface Analysis Working Group (SAWG) of the Consultative Committee for Amount of Substance (CCQM). The aim of this pilot study was to ensure the equivalency in the measurement capability of national metrology institutes for the thickness measurement of HfO2 films. In this pilot study, the thicknesses of six HfO2 films with nominal thickness from 1 nm to 4 nm were measured by X-ray Photoelectron Spectroscopy (XPS), X-ray Reflectometry(XRR), X-ray Fluorescence Analysis (XRF), Transmission Electron Spectroscopy (TEM), Spectroscopic Ellipsometry (SE) and Rutherford Backscattering Spectrometry (RBS). The reference thicknesses were determined by mutual calibration of a zero-offset method (Medium Energy Ion Scattering Spectroscopy (MEIS) of KRISS) and a method traceable to the length unit (the average thicknesses of three XRR data except the thinnest film). These reference thicknesses are traceable to the length unit because they are based on the traceability of XRR. For the thickness measurement by XPS, the effective attenuation length of Hf 4f electrons was determined. In the cases of XRR and TEM, the offset values were determined from a linear fitting between the reference thicknesses and the individual data by XRR and TEM. The amount of substance of HfO2, expressed as thickness of HfO2 films (in both linear and areal density units), was found to be a good subject for a CCQM key comparison.
To reach the main text of this paper, click on Final Report.
The final report has been peer-reviewed and approved for publication by the CCQM.
This key comparison aims to assess the core capabilities of the participants in gas analysis. Such competences include, among others, the capabilities to prepare Primary Standard gas Mixtures (PSMs), perform the necessary purity analysis on the materials used in the gas mixture preparation, the verification of the composition of newly prepared PSMs against existing ones, and the capability of calibrating the composition of a gas mixture. According to the Strategy for Key Comparisons of the Gas Analysis Working Group, this key comparison is classified as an RMO track A key comparison.
The artefacts were binary mixtures of propane in nitrogen at a nominal amount-of-substance fraction level of 1000 μmol/mol. The values and uncertainties from the gravimetric gas mixture preparation were used as key comparison reference values (KCRVs). Each transfer standard had its own KCRV. The results are generally good. All results are within ± 1 % of the KCRV.
Numerous membrane importers rely on accessory water-soluble proteins to capture their substrates. These substrate-binding proteins (SBP) have a strong affinity for their ligands; yet, substrate release onto the low-affinity membrane transporter must occur for uptake to proceed. It is generally accepted that release is facilitated by the association of SBP and transporter, upon which the SBP adopts a conformation similar to the unliganded state, whose affinity is sufficiently reduced. Despite the appeal of this mechanism, however, direct supporting evidence is lacking. Here, we use experimental and theoretical methods to demonstrate that an allosteric mechanism of enhanced substrate release is indeed plausible. First, we report the atomic-resolution structure of apo TeaA, the SBP of the Na+-coupled ectoine TRAP transporter TeaBC from Halomonas elongata DSM2581T, and compare it with the substrate-bound structure previously reported. Conformational free-energy landscape calculations based upon molecular dynamics simulations are then used to dissect the mechanism that couples ectoine binding to structural change in TeaA. These insights allow us to design a triple mutation that biases TeaA toward apo-like conformations without directly perturbing the binding cleft, thus mimicking the influence of the membrane transporter. Calorimetric measurements demonstrate that the ectoine affinity of the conformationally biased triple mutant is 100-fold weaker than that of the wild type. By contrast, a control mutant predicted to be conformationally unbiased displays wild-type affinity. This work thus demonstrates that substrate release from SBPs onto their membrane transporters can be facilitated by the latter through a mechanism of allosteric modulation of the former.
A multiproxy approach to evaluate biocidal treatments on biodeteriorated majolica glazed tiles
(2016)
The Fishing House located on the grounds of the Marquis of Pombal Palace, Oeiras, Portugal, was built in the 18th century. During this epoch, Portuguese gardens, such as the one surrounding the Fishing House, were commonly ornamented with glazed wall tile claddings. Currently, some of these outdoor tile panels are covered with dark colored biofilms, contributing to undesirable aesthetic changes and eventually inducing chemical and physical damage to the tile surfaces. Phylogenetic analyses revealed that the investigated biofilms are mainly composed of green algae, cyanobacteria and dematiaceous fungi. With the aim of mitigating biodeterioration, four different biocides (TiO2 nanoparticles, Biotin® T, Preventol® RI 80 and Albilex Biostat®) were applied in situ to the glazed wall tiles. Their efficacy was monitored by visual examination, epifluorescence microscopy and DNA-based analysis. Significant changes in the microbial community composition were observed 4 months after treatment with Preventol® RI 80 and Biotin® T. Although the original community was inactivated after these treatments, an early stage of re-colonization was detected 6 months after the biocide application. TiO2 nanoparticles showed promising results due to their self-cleaning effect, causing the detachment of the biofilm from the tile surface, which remained clean 6 and even 24 months after biocide application.
Numerous membrane importers rely on accessory water-soluble proteins to capture their substrates. These substrate-binding Proteins (SBP) have a strong affinity for their ligands; yet, Substrate release onto the low-affinity membrane transporter must occur for uptake to proceed. It is generally accepted that release is facilitated by the association of SBP and transporter, upon which the SBP adopts a conformation similar to the unliganded state, whose affinity is sufficiently reduced. Despite the appeal of this mechanism, however, direct supporting evidence is lacking. Here, we use experimental and theoretical methods to demonstrate that an allosteric mechanism of enhanced substrate release is indeed plausible.
First, we report the atomic-resolution structure of APO TeaA, the SBP of the Na!-coupled ectoine TRAP transporter TeaBC from Halomonas elongata DSM2581T, and compare it with the substrate-bound structure previously reported. Conformational freeenergy landscape calculations based upon molecular Dynamics simulations are then used to dissect the mechanism that couples ectoine binding to structural change in TeaA. These insights allow us to design a triple mutation that biases TeaA toward apo-like conformations without directly perturbing the binding cleft, thus mimicking the influence of the membrane transporter. Calorimetric measurements demonstrate that the ectoine affinity of the conformationally biased triple mutant is 100-fold weaker than that of the wild type. By contrast, a control mutant predicted to be conformationally unbiased displays wild-type affinity. This work thus demonstrates that substrate release from SBPs onto their Membrane transporters can be facilitated by the latter through a mechanism of allosteric modulation of the former.
Experimental characterization of the thermodynamic behavior of multicomponent gas mixtures of accurately known composition is of great importance for testing the current reference equation of state for natural gases and related mixtures, GERG-2008. Natural gas composition may change considerably due to the diversity of origins, or the possibility to incorporate hydrogen, biogas or other non-conventional energy gases.
Thus, the Consultative Committee for Amount of Substance: Metrology in Chemistry and Biology (CCQM) of the Bureau International des Poids et Mesures (BIPM) launched a key comparison on primary standard mixtures for natural gases of this particular characteristics. One mixture is a hydrogen-enriched natural gas mixture (13 components, x(H2) = 0.03) with low calorific value to facilitate support to power-to-gas applications, which often involve blending hydrogen with natural gas. The other mixture resembles a typical liquefied natural gas (“LNG”, 9 components) with high calorific value.
The GERG-2008 and AGA8-DC92 equations of state enable the calculation of thermal and caloric properties for natural gases and other related mixtures consisting of up to 21 pure components. Experimental characterization of the thermodynamic behavior of gas binary mixtures is of great importance because most of the binary systems were taken into account by using adjusted reducing functions for density and temperature. Only for those binary mixtures for which sufficient accurate experimental data were available, specific departure functions were developed. For the binary mixture methane-helium no departure function was developed so far.
This work studied the thermodynamic behavior of two gravimetrically prepared methane-helium binary mixtures through accurate (p, ρ, T) experimental data obtained by using a single-sinker densimeter with magnetic suspension coupling.
This work provides accurate experimental (p, rho, T) values for three binary mixtures of methane with helium: (0.95 (amount-of-substance fraction) CH₄+ 0.05 He) and (0.90 CH₄+ 0.10 He) at temperatures of (240, 250, and 260) K and (0.50 CH₄+ 0.50 He) from (240 to 400) K. This work is a continuation of a previous one which reported accurate experimental (p, rho, T) values for the (0.95 CH₄+ 0.05 He) and the (0.90 CH₄+ 0.10 He) binary mixtures over the temperature range from (250 to 400) K. All density measurements were performed by using a single-sinker densimeter with magnetic suspension coupling at pressures up to 20 MPa. Experimental values were compared with the corresponding densities calculated from the GERG-2008 and the AGA8-DC92 equations of state, respectively. Deviations from the GERG-2008 are much larger than from the AGA8-DC92 (up to -6.5%). These deviations increase with decreasing temperature, with increasing pressure, and with increasing helium fraction. In contrast, deviations from the AGA8-DC92 are within the 0.5% band. The experimental values were also used to calculate the second and the third virial coefficients, B(T,x) and C(T,x), as well as the second interaction virial coefficient B12(T) for this mixture.