Open Access

High-throughput density functional theory (DFT) calculations have become a vital element of computational materials science, enabling materials screening, property database generation, and training of “universal” machine learning models. While several software frameworks have emerged to support these computational efforts, new developments such as machine learned force fields have increased demands for more flexible and programmable workflow solutions. This manuscript introduces atomate2, a comprehensive evolution of our original atomate framework, designed to address existing limitations in computational materials research infrastructure. Key features include the support for multiple electronic structure packages and interoperability between them, along with generalizable workflows that can be written in an abstract form irrespective of the DFT package or machine learning force field used within them. Our hope is that atomate2's improved usability and extensibility can reduce technical barriers for high-throughput research workflows and facilitate the rapid adoption of emerging methods in computational material science.

Atomistic simulations of matter, especially those that leverage first-principles (ab initio) electronic structure theory, provide a microscopic view of the world, underpinning much of our understanding of chemistry and materials science. Over the last decade or so, machine-learned force fields have transformed atomistic modeling by enabling simulations of ab initio quality over unprecedented time and length scales. However, early machine-learning (ML) force fields have largely been limited by (i) the substantial computational and human effort required to develop and validate potentials for each particular system of interest and (ii) a general lack of transferability from one chemical system to the next. Here, we show that it is possible to create a general-purpose atomistic ML model, trained on a public dataset of moderate size, that is capable of running stable molecular dynamics for a wide range of molecules and materials. We demonstrate the power of the MACE-MP-0 model—and its qualitative and at times quantitative accuracy—on a diverse set of problems in the physical sciences, including properties of solids, liquids, gases, chemical reactions, interfaces, and even the dynamics of a small protein. The model can be applied out of the box as a starting or “foundation” model for any atomistic system of interest and, when desired, can be fine-tuned on just a handful of application-specific data points to reach ab initio accuracy. Establishing that a stable force-field model can cover almost all materials changes atomistic modeling in a fundamental way: experienced users obtain reliable results much faster, and beginners face a lower barrier to entry. Foundation models thus represent a step toward democratizing the revolution in atomic-scale modeling that has been brought about by ML force fields.

This repo allows to recreate our publication: https://doi.org/10.1002/cplu.202200123 In contrast to 0.2.2, we fixed an issue with absolute path.

Most machine learning models for materials science rely on descriptors based on materials compositions and structures, even though the chemical bond has been proven to be a valuable concept for predicting materials properties. Over the years, various theoretical frameworks have been developed to characterize bonding in solid-state materials. However, integrating bonding information from these frameworks into machine learning pipelines at scale has been limited by the lack of a systematically generated and validated database. Recent advances in high-throughput bonding analysis workflows have addressed this issue, and our previously computed Quantum-Chemical Bonding Database for Solid-State Materials was extended to include approximately 13,000 materials. This database is then used to derive a new set of quantum-chemical bonding descriptors. A systematic assessment is performed using statistical significance tests to evaluate how the inclusion of these descriptors influences the performance of machine-learning models that otherwise rely solely on structure- and composition-derived features. Models are built to predict elastic, vibrational, and thermodynamic properties typically associated with chemical bonding in materials. The results demonstrate that incorporating quantum-chemical bonding descriptors not only improves predictive performance but also helps identify intuitive expressions for properties such as the projected force constant and lattice thermal conductivity via symbolic regression.

A popular heuristic derived from the Kanamori-Goodenough-Anderson rules of superexchange connects bond angles and magnetism in certain transition metal compounds. We evaluate the fulfillment of this heuristic on databases of magnetic structures. The heuristic is partly satisfied in magnetic structures from experiment, and exceptions can be rationalized. We further show that incorporating this heuristic into machine learning models for magnetism improves the prediction.