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The present work is focused on the study of the spectroscopic and complexometric behavior of different ion-sensitive fl uorescent probes. Three of the four types of probes studied follow a conventional principle of signal generation and their molecular constitution corresponds to either a fl uorescent ligand ( BP(OH)2), so-called intrinsic charge transfer (ICT) fl uorescent probes (donor- acceptor-substituted chalcones), or electron transfer (ET) fl uorescent probes (substituted triaryl-Δ2- pyrazolines). The latter two systems are designed in a modular way and thus, both the signal generating fl uorophore and the complexing receptor can be carefully tuned. Whereas in the case of the ICT probes both units are electronically conjugated, these moieties are more or less electronically decoupled in the ET probes and signal generation is based on the modifi cation of a long range electron transfer process. The fourth type of probe investigated, a boron dipyrromethene derivative (BDP), is also designed in a modular way. But here, due to the highly pretwisted constitution of the molecule, fl uorophore and receptor are only “virtually” decoupled. Besides employing this alternative mechanism of signal generation, control of the selectivity by carefully directed receptor design and improvement of the selectivity and sensitivity of fl uorometric metal ion analysis by recording time resolved emission spectra (TRES) were the main aims of these investigations. Furthermore, with the aid of various model compounds, NMR spectroscopy as well as quantum chemical calculations, a fundamental understanding of the photophysical behavior of the different classes of dyes was obtained. In accordance with its parent compound 2,2‘- bipyridyl, the fl uorescent ligand BP(OH)2 shows complexation induced changes of its absorption and emission behavior in the presence of heavy and transition metal ions. Whereas paramagnetic ions such as CuII or NiII (and also HgII) lead to static fl uorescence quenching, the diamagnetic ions ZnII and CdII form strongly fl uorescent complexes with ion specifi c fl uorescence lifetimes in the ns time range. Both complexes are stable in the excited state which is manifested by a strongly reduced rate constant of non radiative deactivation compared to that of the free ligand. Both the absorption and emission spectra of the complexes largely overlap and a discrimination with steady-state fl uorometry is very limited. Nevertheless, with time resolved fl uorometry a separation of both components is possible and for a series of synthetic ZnII/CdII containing samples this gain in selectivity by global analysis of the time resolved emission spectra (TRES) could be demonstrated. The intrinsic fl uorescent probes of chalcone type contain a cation selective receptor in the donor part of the molecule and show a strong decrease of the intramolecular charge transfer process due to complexation induced weakening of the donor. Depending on molecular probe design and solvent polarity, the fl uorescence of the uncomplexed molecule occurs either from a polar directly exicted (E*) or a highly polar charge transfer state (A*) which is populated via an excited state reaction involving single bond twisting. Here, competing processes include population of a non emissive polar (K*) or weakly polar (P*) transient state. Furthermore, the fl uorescence of these dyes can be quenched by energetically close lying nπ* states (in apolar solvents) or by enhanced internal conversion due to the decreasing energy gap between ground and excited state (in highly polar solvents). As mentioned above, the donor strength is reduced upon cation complexation in polar solvents and a moderate fl uorescence enhancement occurs. Besides increased fl uorescence quantum yields, this effect results in ion specifi c fl uorescence lifetimes of the complexes. Upon exchanging the aza oxa for an aza thia macrocycle in the receptor part of the system, the cation selectivity could be tuned from alkali and alkaline earth metal ions to the thiophilic metal ions AgI and HgII. Here, especially the fl uorescence enhancement in the presence of the well-known quencher HgII is analytically valuable. Upon cation binding the ET probes of the triaryl-Δ2-pyrazoline type show very small spectral shifts but much larger fl uorescence enhancement compared to the ICT probes. Again, by problem specifi c use of different receptors, the selectivities can be controlled. Based on a detailed investigation, for the 5-p-N,N-dialkylanilino-3-benzthiazol-1-phenyl-Δ2-pyrazolines, the intramolecular processes which lead to fl uorescence quencing in the unbound state and “switching on” of the fl uorescence in the complexed state could be identifi ed. For these molecules, the intramolecular charge transfer in the basic chromophore occurs in the sub ps time range and is quenched by an electron transfer process from the largely electronically decoupled receptor to the acceptor part of the basic chromophore on the ps time scale in highly polar solvents. “Virtually” decoupling fl uorophore and receptor in the BDP derivative fi nally makes it possible to yield extremely high complexation induced fl uorescence enhancement signals. For these highly pretwisted donor acceptor biaryls, the directly excited emissive state (LE) forms a highly polar, twisted charge separated charge transfer state (CT) in polar solvents. Emission of the latter is strongly forbidden and, depending on solvent polarity, is largely red shifted compared to the LE fl uorescence. Thus, a largely separated dual fl uorescence is already observed in solvents of medium polarity and in highly polar solvents both fl uorescence bands are nearly completely quenched. Metal ion complexation blocks off the CT process and leads to a “switching on” of the LE emission yielding fl uorescence enhancement factors > 1000. This process is so sensitive that for most of the cation complexes studied, two emissive complex conformers with strongly overlapping absorption and emission spectra occur which could be distinguished by their fl uorescence lifetimes.
Im Rahmen dieses Projekts wurden Fluoreszenzfarbstoffe und neue intrinsische und konjugierte Fluoreszenzmarker mit Sauerstoff, Schwefel, Stickstoff-Heteromakrozyklen als kationenspezifische Rezeptoren für analytische Applikationen der zeitaufgelösten Fluorometrie von der Kiewer Gruppe synthetisiert. Die in Berlin an diesen Verbindungen durchgeführten fluorometrischen Charakterisierungen und spektroskopischen Untersuchungen zum Kationenkomplexierungsverfahren ermöglichten die Aufstellung von ersten Designprinzipien für Fluoreszenzmarker für Übergangs- und Schwermetallionen.
The complexation behaviour of 2,2-bipyridyl-3,3-diol and 2,2-bipyridyl-3-ol, BP(OH)2 and BPOH, with various heavy and transition metal
ions has been investigated in aqueous, alcoholic, and acetonitrile solutions. Whereas the complexes with paramagnetic ions and HgII
are non-fluorescent, ZnII and CdII form highly fluorescent complexes, their coordination geometries depending on the
solvent proticity and hydrogen-bond donating ability. Through a comparative study with the corresponding chelates of 2,2-bipyridyl (bipy),
N,O-coordination in a six-membered ring chelate has been found to be the dominant binding mode in both the ZnII and CdII
complexes in the protic solvents water and ethanol. Only for ZnII and BPOH is exclusive N,N-chelation found in acetonitrile. NMR
measurements on BP(OH)2, BPOH, and bipy in the presence of ZnII and CdII in acetonitrile confirmed these
findings.
The ability and structural requirements of 4-dimethylamino-4-cyano-substituted biphenyls showing photoinduced intramolecular charge transfer (CT) to serve as hydrogen bond- or pH-sensitive fluorescent probes is investigated. The donoracceptor (DA) biphenyls I and II being planar in the CT excited state are most suitable as pH-sensitive fluorescent probes. The two compounds show analytically valuable features such as well-separated absorption and emission bands and signal changes spanning four orders of magnitude and can be employed in ratiometric, self-calibrating, and highly sensitive pH fluorosensing in the range 0<pH<4. Because of an enhanced charge separation in the excited state, the highly twisted DA biphenyl III shows an increased proton sensitivity and can therefore be used to probe solvent proticity ia hydrogen bond formation. The molecular and electronic characteristics of the two types of probes are discussed for the different neutral and acidic alcoholic and/or aqueous solvent mixtures investigated.
The spectroscopic properties of 1-phenyl-3-benzothiazol-2-yl-5-(4-R-phenyl)-2-pyrazolines are strongly dependent on both the electronic nature of the substituent R and solvent polarity. As revealed by spectroscopic studies as a function of solvent polarity as well as temperature, for electron-rich amino donor substituents in polar solvents, deactivation of the strongly emissive charge transfer (CT) state of the basic 1-phenyl-3-benzothiazol-2-yl-2-pyrazoline chromophore has to compete with a fast intramolecular electron transfer (ET) quenching reaction. In the case of the dimethylamino derivative (R = DMA), the rate constant of ET in acetonitrile was determined to ket = 3 × 1010 s-1. This ET process can be utilized for metal ion sensing by introducing nitrogen containing aza crown ether receptor units to the 4-position of the 5-phenyl group. The spectroscopically determined ET rates of the 5-(N-alkyl)anilino substituents, a DMA, a tetrathia- (AT415C5), and a tetraoxa-monoaza-15-crown-5 (A15C5) group, correlate with electrochemical data and increase in the order AT415C5 < A15C5 < DMA. The metal ion sensing abilities of the two crowned derivatives are presented, and the different signaling mechanisms include binding to the crown ether in the 4-R-position, chelate formation in the 3-benzothiazol-2-yl-2-pyrazoline moiety, and electrophotochemical detection. Furthermore, the rigid "pseudo spiro" geometry of the molecules, which holds the three substituents of the central 2-pyrazoline ring in a fixed prearrangement, was confirmed by X-ray structure analysis.
For the fluorescent ligand 1-(9-anthrylcarbonyl)-3,3-tetramethylenethiourea with Cu(ClO4)2 or strong acids an unusual rearrangement reaction occurred yielding a highly emissive S-(9-anthryl)isothiouronium salt. This rearrangement product was characterised by NMR spectroscopy and X-ray analysis as well as absorption and fluorescence spectroscopy. Additionally, the chemical and complexation behaviour of the N-anthrylcarbonylthiourea derivative is compared to that of its naphthyl and phenyl analogues.
The fluorescence quenching of 1,5-bis[4-(diethylamino)phenyl]penta-1,4-dien-3-one (1), 1-[4-(diethylamino)phenyl]-5-phenylpenta-1,4-dien-3-one (2) and chalcone 3 (1-[4-(diethylamino)phenyl]but-1-en-3-one) was studied in acetonitrile using ferrocene and three commercially available derivatives, 1,1?-diacetylferrocene, acetylferrocene and 1,1?-dimethylferrocene. The spectroscopic and electrochemical characteristics of all the compounds were investigated. The feasibility of the quenching process was calculated, showing in particular that electron transfer was thermodynamically possible in every case. The steady-state fluorescence of the three organic dyes was then measured in the presence and in the absence of the ferrocenyl derivatives and the data were corrected for inner-filter effects. 1,1?-Diacetylferrocene and acetylferrocene proved to be the most efficient quenchers, and among the three dyes investigated, chalcone 3 was the most sensitive to the presence of the ferrocenyl derivatives. However, the fluorescence decay times of the ketocyanines were not affected by the presence of the ferrocene derivatives, indicating that quenching was not diffusion-controlled but rather the consequence of the formation of a ground state complex.
The acceptor strength of the boron-dipyrromethene chromophore in directly linked donoracceptor compounds can be tuned by substituents in such a way that a fast excited state charge transfer takes place even for the comparatively weak benzo crown electron donor. This leads to strong fluorescence quenching. Upon binding of cations (Na+ and K+) to the benzo crown receptor, the donor properties of the latter are further reduced, partly suppressing charge transfer. Large fluorescence enhancement factors and cation-selective fluorescence decay times result which are the basis for improved analytical application of these dyes as highly sensitive fluorescent probes.
Real-time and real-space analysis of heavy and transition metal ions employing fluorescent sensor molecules has received much attention over the past few years. Since many of these cations possess intrinsic properties that usually quench the fluorescence of organic dye molecules, a lot of research has lately been devoted to designing fluorescent probes that show complexation-induced fluorescence enhancement. Such an analytical reaction would be highly desirable in terms of increased sensitivity and selectivity. However, in this particular field of sensor research, the photophysical and photochemical mechanisms involved as well as the chemical constitutions of the sensor molecules employed are rather diverse and up to now, very few attempts have been made to establish some general concepts for rational probe design. By analyzing various systems published by other researchers as well as own work, this contribution aims at an elucidation of some of the underlying principles of heavy and transition metal ion-enhanced emission.
A novel fluorescent host-guest material, molecular sieves of AlPO4-5-type doped with 2,2'-bipyridyl-3,3'-diol, was prepared and spectroscopically characterized. The composite crystals show a pronounced optical anisotropy, indicating a high degree of alignment of the guest molecules within the zeolitic pore system. A mean tilting angle of 22 was found for the orientation of the individual dye molecules in the straight channels. The corrected fluorescence emission spectra were determined, and time-resolved fluorescence studies revealed that the dye molecules are preferentially found in three different types of microenvironment. By invoking pH-dependent studies of the dye in aqueous solution, we could trace these spectroscopic features back to two main influences, coadsorbed water within AlPO4-5 pores and guest-host interactions with a few relatively weak Brnsted acid (defect) sites of the inorganic host network.
One of the key interests in the recent development of fluorescent molecular sensors and switches is the realization of systems that show strong signal changes as a response to the chemical trigger. Aiming at rational probe design, this article compiles and compares different promising strategies to extract those supramolecular and photophysical features that allow the construction of molecular devices suitable for efficient signaling. The examples comprise fluorescence OFFON as well as ONOFF operative systems and the mechanisms, properties, and limitations of the different design concepts are discussed.
The photophysical properties of several newly synthesized 1-benzothiazole-3-(4-donor)-phenyl-substituted prop-2-en-1-ones (substituted chalcones) are studied as a function of solvent polarity, temperature, and metal ion by employing steady-state and time-resolved spectroscopy. To investigate the effect of bulkiness and donor strength of the anilino moiety on the spectroscopic properties of these dyes, the spectroscopic behavior of the 4-N-dimethylamino (DMA), the 4-N-tetraoxa-monoaza-15-crown-5 (A15C5), and the 4-N-tetrathia-monoaza-15-crown-5 (AT415C5) derivatives as well as the 3-julolidino (Jul) analogue is compared. Absorption and fluorescence measurements reveal that the strength of the intramolecular charge transfer (ICT) process increases on the order of AT415C5 < A15C5 ~ DMA < Jul. The slight but significant differences between the two crowned dyes are well-supported by the results of the X-ray structure analysis, where oxa aza and thia aza crowns show essentially different geometries. For both fluoroionophores, this variation of heteroatom substitution pattern of the receptor induces specific cation selectivities. The spectroscopic effects accompanying complexation and the different binding sites are studied by steady-state and time-resolved optical spectroscopy as well as NMR spectroscopy. Whereas the probe carrying a tetraoxa monoaza 15-crown-5 receptor shows cation-induced fluorescence enhancement in the presence of alkali and alkaline-earth metal ions, its tetrathia analogue binds selectively to HgII, AgI, and CuII in acetonitrile. Moreover, an increase in fluorescence is observed for the latter probe even upon coordination to the widely known fluorescence quencher HgII. Besides receptor complexation, chelate formation in the benzothiazole-carbonyl acceptor part of these intrinsic fluorescent probes is possible, leading to a chromoionophoric signaling behavior in the near-infrared (NIR).
Syntheses and photophysical properties of a series of cation-sensitive polymethine and styryl dyes
(2000)
The syntheses and photophysical properties of 20 cation-sensitive fluoroionophores carrying the tetraoxa monoaza 15-crown-5 receptor are described and discussed. Whereas complexation induces only weak effects for the positively charged hemicyanine probes, the closely related styryl dyes show stronger changes in their photophysical properties upon cation binding in the analytically advantageous near-infrared (NIR) region. The strongest effects in both cation-induced spectral effects and complex stability constants are observed for the uncharged probes of styryl base-type, but these probes usually absorb and emit at shorter wavelengths in the UV/VIS region. For both styryl dyes and styryl bases, in some cases cation-induced fluorescence enhancement or quenching is found.
Several series of crown fluoro-chromo-ionophores covering a broad spectral range are investigated experimentally and compared to their theoretically studied dimethylamino (DMA) analogues. It is shown that the logarithm of the complex stability constants log KS for NaI and CaII ions do not correlate with the observed complexation-induced shift. Likewise, an unsatisfactory correlation is found between the local charge density on the amino nitrogen of the DMA dyes and log KS. However, using the charge of the whole dimethylamino group instead strongly improves this correlation. This can be understood by considering pyramidalization and hyperconjugation effects on the amino nitrogen. The observed correlation allows a novel approach to the design of fluoroionophores with optimized properties.
From the fluorescence properties of chalcones as a function of solvent polarity, and by the comparison to derivatives with donors and acceptors and with various selectively bridged bonds, it can be concluded that two emissive and two nonemissive states are needed to describe the fluorescence behavior. Three of these states are connected with bond twisting and lead to species with high or low dipole moment, two of them situated in the proximity of a conical intersection.
The photophysical behavior of a newly synthesized aza crown-substituted boron-dipyrromethene (BDP) dye and its dimethylamino analogue were investigated with steady-state and time-resolved fluorometry and compared to a reference compound. In solvents more polar than hexane, excitation of the dyes leads to a fast charge transfer from the locally excited (LE) state to a weakly emissive charge-transfer (CT) state. The donor-substituted compounds show dual emission from the LE and CT state, both fluorescence quantum yields being low. The rate constant of excited-state charge separation, calculated from the global analysis of time-resolved emission data, was determined to 1.6 × 1011 s-1 in 1,4-dioxane. The crowned compound forms 1:1-complexes with various alkali and alkaline-earth metal ions, which exist as two conformers in solution. In these complexes, coordination of the cation to the nitrogen donor atom of the crown inhibits the charge-transfer process, leading to a cation-dependent enhancement of the LE emission and the fluorescence lifetimes by factors >103. This efficient "switching on" of the fluorescence renders the crowned BDP dye an extremely sensitive fluorescent probe for metal ions.
The simultaneous analytical discrimination of spectrally very similar components with time- and wavelength-resolved fluorescence spectroscopy is demonstrated for the fluorescent probe BP(OH)2 and its complexes with the d10 metal ions CdII and ZnII in water. Whereas the absorption and emission spectra of the three components largely overlap the fluorescence lifetimes differ significantly. As a consequence, analyzing steady-state emission spectra of samples containing unknown amounts of both metal ions yields poor results for the analytical validity but the recording of fluorescence decay curves at different emission wavelengths improves the quality of the results drastically. The two techniques are compared in terms of goodness and analytical accuracy of the fit as well as analytical applicability.
Steady-state and time-resolved fluorometry of fluorescent pollutants and heavy metal complexes
(1997)
Time-resolved laser-induced fluorescence spectroscopy is one of the most sensitive optical methods which is well suited for on-line in situ analysis. Here, three examples for the steady- state and time-resolved fluorescence analysis of environmentally important analytes, the fluorescent monoaromatic hydrocarbons benzene, toluene, and xylene as well as non fluorescent heavy metal ions forming a fluorescent complex with a cation coordinating fluorescence probe, are presented and the potential of both methods is discussed. For BTX, various mixtures of the spectrally similar compounds B, T, and X showing different fluorescence lifetimes were studied with both methods. As an example for fluorometric metal ion analysis, the fluorescence probe BP(OH)2 (2,2'-bipyridyl- 3,3'-diol) was employed for the determination of d10 metal ions in water and the newly developed fluorescence probe APTA for the detection of Cu(II). Cation complexation of BP(OH2 yields spectrally very similar complexes which differ in their fluorescence lifetimes. Complexation of APTA to Cu(II) leads to small spectral changes and a strong increase in fluorescence quantum yield and lifetime. For the analytes studied, a comparison of the detection limits, standard deviations, and linear dynamic range of both methods clearly demonstrates the analytical potential of time-resolved fluorometry.
ZnII and CdII complexes of 2,2'-bipyridyl-3,3'-diol: discrimination with time-resolved fluorometry
(1996)
A bisamidopyridine-type receptor, N,N'-bis(6-methyl-2-pyridyl)pyridine-2,6-dicarboxamide (1), and its CoIII complex were prepared and their X-ray structures were compared to those of N,N'-diphenylpyridine-2,6-dicarboxamide (2) and CoIII(2)2. Introduction of the two additional coordinative groups resulted in second-order interactions between the central ion and the nitrogen atoms of the terminal pyridine moieties in the crystalline state. Solution studies in acetonitrile revealed the importance of these interactions for the ligand's metal ion recognition ability. Whereas 2 only binds to PbII and CuII, 1 yields complexes with a majority of the heavy and transition metal ions studied, CoII, NiII, CuII, ZnII, FeIII, FeII, HgII, and PbII, respectively. The cation binding properties in solution were investigated by absorption spectroscopy and in the case of 1-MII/III, the formation of two spectroscopically distinguishable types of complexes was found. Protonation experiments and theoretical considerations helped to gain further insight into possible modes of coordination in solution.
The 1,3-diphenyl-1H-pyrazolo[3,4-b]-quinoline chromophore is a versatile building block for the construction of brightly fluorescent molecular sensors. Facile synthetic procedures allow integration of the chromophore into fluorophore-spacer-receptor systems as well as fluoroionophores operating via intramolecular charge transfer. Whereas the former photoinduced electron-transfer probes show strong analyte-induced fluorescence enhancement, the latter exhibit bright ratiometric dual emission. Employing prototype macrocyclic receptors, the favorable signaling features for metal ion recognition are demonstrated.
The spectroscopic properties and the photophysical behaviour of difluoroboradiaza-s-indacene 1, especially designed for the near infrared (NIR) spectral region and equipped with a p-dimethylaminophenyl group at the meso-position, were studied by steady-state and time-resolved optical spectroscopy. Solvent-dependent measurements revealed that for 1, excited state deactivation is governed by population of a non-emissive charge transfer excited state (1CT) as the solvent polarity increases, whereas reference compound 2 shows strong fluorescence from a locally excited state (1LE) in all the solvents employed. Accordingly, protonation of 1 completely suppresses the quenching excited state charge transfer process and leads to strong enhancement of fluorescence in the NIR, distinguishing 1 as a very sensitive fluorescent sensor molecule for pH or solvent acidity in this favourable wavelength region.
Molekulares Schalten im nahen Infrarot (NIR) mit einem funktionalisierten Bordipyrromethen-Farbstoff
(2001)
Molecular Switching in the Near Infrared (NIR) with a Functionalized Boron-Dipyrromethene Dye
(2001)
Two fluorescent dyes were incorporated into sol-gel derived SiO2 matrices. The dye was added to SiO2 precursors of different degrees of pre-condensation and the spectroscopic properties of the immobilized dye were measured at various aging and drying stages of the resulting gels. The significant influence of the processing parameters on the spectroscopic properties is manifested in the relative intensity of a second red shifted emission band (550560 nm), which was observed besides the typical coumarin emission band (495 nm). The appearance of this long wavelength emission might be attributed to dye aggregation or to other reactions with the ambient matrix forced by micro porosity phenomena.
For the highly selective and sensitive sensing of Hg2+ in water, a new design concept was realized where the selectivity of the probe's binding site is amplified by electronic properties of the chromophore. The molecular architecture of this phenoxazinone-type sensor molecule combines two potential coordination sites via an amino-keto conjugative backbone. These structural prerequisites allow only the most preferred mercuric ion to bind to the dithia dioxa monoaza crown unit, while other heavy, transition, and main group metal ions as well as protons are trapped at the keto group, inducing opposite spectral effects due to interaction with either the donor (Hg2+) or the acceptor group (other cations) of the probe. Besides these advantageous features, the probe operates well within the visible range of the spectrum and displays rather intense molar absorptivities as well as fluorescence quantum yields.
A Chromo- and Fluorogenic Hybrid Chemosensor Material for the Detection of Long-chain Carboxylates
(2005)
The short- and long-term structural evolution and aging of solgel materials prepared under mild conditions are studied by fluorometry, dynamic light scattering (DLS), 29Si NMR and gravimetry. In combination with the first, a newly developed donoracceptor-substituted fluorescent probe with two acidophilic sites of different strength and topology is introduced. Its performance in detecting changes in parameters such as polarity, proticity, and pore volume on the microscopic scale is compared to two other dyes and to the macroscopic changes revealed by DLS, NMR and gravimetry. At early stages of the solgel process, fluorometry, DLS and NMR reveal similar changes which are typical of the structural evolution of SiO2 sols having different synthesis parameters. During later times of sol aging, DLS and NMR reflect the growth of the network and indicate that all sols approach similar structural equilibria. Fluorometry supports these findings by signalling a gradual decrease in mobile species with high proton activity. The formation of the spanning cluster upon gelation is strongly evident only from DLS results while the local environment of the fluorophore remains largely unchanged. However, the fluorescent dye is able to report microscopic changes even during long-term aging. Drying of the gels with a pronounced contraction of solvated pores is readily observable by fluorometry and gravimetry. During the late reaction stages, the fluorescence properties of the tailor-made dye are still sensitive toward the environment.
The need for the traceable characterization of fluorescence instruments is emphasized from a chemists point of view, focusing on spectral fluorescence standards for the determination of the wavelength- and polarization-dependent relative spectral responsivity and relative spectral irradiance of fluorescence measuring systems, respectively. In a first step, major sources of error of fluorescence measurements and instrument calibration are revealed to underline the importance of this issue and to illustrate advantages and disadvantages of physical and chemical transfer standards for generation of spectral correction curves. Secondly, examples for sets of traceable chemical emission and excitation standards are shown that cover a broad spectral region and simple procedures for the determination of corrected emission spectra with acceptable uncertainties are presented. With proper consideration of the respective measurement principle and geometry, these dye-based characterization procedures can be not only applied to spectrofluorometers but also to other types of fluorescence measuring systems and even to Raman spectrometers.
Four novel borondipyrromethene (BDP) and -diindomethene (BDI) dyes with one or two (dimethylamino)styryl extensions at the chromophore were synthesized and spectroscopically investigated. An X-ray crystal structure shows that the extended auxochrome is virtually planar. All dyes thus display intense red/near infrared (NIR) absorption and emission. The (dimethylamino)styryl group induces a charge-transfer character that entails bright solvatochromic fluorescence, which is only quenched with increasing solvent polarity according to the energy-gap law. The dye with an additional dimethylanilino group at the meso position of BDP shows a remarkable switching of lipophilicity by protonation. Two dyes with an 8-hydroxyquinoline ligand at the meso position display quenched emission in the presence of Hg2+ or Al3+ owing to electron transfer from the excited BDP to the complexed receptor. The BDI dye presents a pH indicator with bright fluorescence and extremely low fluorescence anisotropy.
Sensory hybrid host materials for the selective chromo-fluorogenic detection of biogenic amines
(2006)
A strategy for the rational design of a new optical sensor material for the selective recognition of long-chain carboxylates in water is presented. The approach relies on the combination of structure-property relationships to single out the optimal molecular sensor unit and the tuning of the sensing characteristics of an inorganic support material. A spacer-substituted 7-urea-phenoxazin-3-one was employed as the signaling moiety and a mesoporous trimethylsilylated UVM-7 (MCM-41 type) material served as the solid support. The sensor material shows the advantageous features of both modules that is absorption and emission in the visible spectral range, a fluorescence red-shift and enhancement upon analyte coordination, and the amplification of noncovalent (binding) and hydrogen-bonding (recognition) interactions in the detection event. Besides these basic results that are related to the design and performance of the sensor material, the paper discusses general aspects of amido-substituted phenoxazinone photophysics and addresses some general features of molecular anion recognition chemistry in aqueous vs nonaqueous media, utilizing steady-state and time-resolved optical as well as NMR spectroscopies. Detailed studies on potentially competing biochemical species and a first access to the schematic model of the response of the sensor material as obtained by a combination of fluorescence lifetime distribution analysis and Langmuir-type fitting of the gross binding constants complement the key issues of the paper.
Particle-based assays are becoming versatile analytical tools due to their cost-effectiveness, speed, straightforward and diverse functionalization chemistries, especially when polystyrene particles are used. The introduction of functional groups (–COOH, –NH2, etc.) to the surface of such polystyrene particles promotes their application in bioanalytics. However, the traditional method to determine the amount of surface carboxylate groups is conductivity titration, which is usually time- and resources-consuming and discontinuous. Here, we synthesized polystyrene microparticles with different contents of carboxylate groups, and then investigated a simpler and potentially continuous approach to determine the amount of surface carboxylate groups by Zeta potential measurements. The results were compared to the traditional titration method and to actual coupling efficiencies of the functionalized particles with a model oligonucleotide probe as determined by flow cytometry. All quantification methods revealed good agreement.
Design strategies for (bio)chemical systems that are inspired by nature's accomplishments in system design and operation on various levels of complexity are increasingly gaining in importance. Within the broad field of biomimetic chemistry, this article highlights various attempts toward improved and sophisticated sensory materials that rely on the combination of supramolecular (bio)chemical recognition principles and nanoscopic solid structures. Examples range from more established concepts such as hybrid sensing ensembles with improved sensitivity and selectivity or for target analytes for which selectivity is hard to achieve by conventional methods, which were often inspired by protein binding pockets or ion channels in membranes, to very recent approaches relying on target-gated amplified signalling with functionalised mesoporous inorganic supports and the integration of native biological sensory species such as transmembrane proteins in spherically supported bilayer membranes. Besides obvious mimicry of recognition-based processes, selected approaches toward chemical transduction junctions utilizing artificially organized synapses, hybrid ensembles for improved antibody generation and uniquely colour changing systems are discussed. All of these strategies open up exciting new prospects for the development of sensing concepts and sensory devices at the interface of nanotechnology, smart materials and supramolecular (bio)chemistry.
The synthesis of a series of novel core-modified and fused-ring-expanded tetraphenylporphyrins is reported. Theoretical calculations and magnetic circular dichroism (MCD) and fluorescence spectroscopic measurements were used to analyze the effect of core modification with Group 16 oxygen, sulfur, selenium, and tellurium atoms on the optical properties and electronic structures of the porphyrins. Marked redshifts of the Q and B bands and accelerated intersystem-crossing rates were observed, thus making these compounds potentially suitable for use in a variety of applications. The scope for further fine-tuning of these optical properties based on additional structural modifications, such as the incorporation of fused benzene rings to form ABAB structures by using a thiophene precursor with a fused bicyclo[2.2.2]octadiene ring and the introduction of various substituents onto the meso-phenyl rings, is also examined.
A highly fluorescent pH sensing membrane for the alkaline pH range incorporating a BODIPY dye
(2013)
A robust and re-usable dipstick-type fluorescent pH sensor for the alkaline pH range was developed by embedding a brightly fluorescent borondipyrromethene (BODIPY) dye bearing an acidic phenol moiety into a polyurethane matrix immobilized on a 3D epoxy-functionalized polymer support. The sensor strip has a dynamic working range of pH 10.0–13.1, i.e., operates in strongly basic media where pH glass electrodes can suffer from alkaline errors, and tolerates a high electrolyte background such as simulated seawater and sewage. This work describes the preparation of the sensing material and provides insight into the features that a hydrogel sensing membrane can bestow on an embedded pH-responsive dye by means of optical spectroscopic investigations.
A naphthalimide-based fluorescent indicator monomer 1 for the integration into chromo- and fluorogenic molecularly imprinted polymers (MIPs) was synthesized and characterized. The monomer was equipped with a urea binding site to respond to carboxylate-containing guests with absorption and fluorescence changes, namely a bathochromic shift in absorption and fluorescence quenching. Detailed spectroscopic analyses of the title compound and various models revealed the signaling mechanism. Titration studies employing benzoate and Z-ʟ-phenylalanine (Z-ʟ-Phe) suggest that indicator monomers such as the title compound undergo a mixture of deprotonation and complex formation in the presence of benzoate but yield hydrogen-bonded complexes, which are desirable for the molecular imprinting process, with weakly basic guests like Z-ʟ-Phe. Compound 1 could be successfully employed in the synthesis of monolithic and thin-film MIPs against Z-ʟ-Phe, Z-L-glutamic acid, and penicillin G. Chromatographic assessment of the selectivity features of the monoliths revealed enantioselective discrimination and clear imprinting effects. Immobilized on glass coverslips, the thin-film MIPs of 1 displayed a clear signaling behavior with a pronounced enantioselective fluorescence quenching dependence and a promising discrimination against cross-analytes.
In a systematic approach we synthesized a new series of fluorescent probes incorporating donor–acceptor (D-A) substituted 1,2,3-triazoles as conjugative π-linkers between the alkali metal ion receptor N-phenylaza-[18]crown-6 and different fluorophoric groups with different electron-acceptor properties (4-naphthalimide, meso-phenyl-BODIPY and 9-anthracene) and investigated their performance in organic and aqueous environments (physiological conditions). In the charge-transfer (CT) type probes 1, 2 and 7, the fluorescence is almost completely quenched by intramolecular CT (ICT) processes involving charge-separated states. In the presence of Na+ and K+ ICT is interrupted, which resulted in a lighting-up of the fluorescence in acetonitrile. Among the investigated fluoroionophores, compound 7, which contains a 9-anthracenyl moiety as the electron-accepting fluorophore, is the only probe which retains light-up features in water and works as a highly K+/Na+-selective probe under simulated physiological conditions. Virtually decoupled BODIPY-based 6 and photoinduced electron transfer (PET) type probes 3–5, where the 10-substituted anthracen-9-yl fluorophores are connected to the 1,2,3-triazole through a methylene spacer, show strong ion-induced fluorescence enhancement in acetonitrile, but not under physiological conditions. Electrochemical studies and theoretical calculations were used to assess and support the underlying mechanisms for the new ICT and PET 1,2,3-triazole fluoroionophores.
Fluorinated Boron-Dipyrromethene (BODIPY) dyes: bright and versatile probes for surface analysis
(2013)
A family of bright boron-dipyrromethene-type fluorophores with a high number of fluorine atoms (F-BODIPYs) has been developed and characterized by X-ray crystallography and optical spectroscopy. The introduction of 3,5-bis(trifluoromethyl)phenyl and pentafluorophenyl moieties significantly enhances the photostability of such dyes, yielding for instance photostable near-infrared (NIR) fluorophores that show emission maxima>750 nm, when the BODIPY's π system is extended with two (dimethylamino)styryl and (dimethylamino)naphthastyryl moieties, or green-emitting BODIPYs with fluorescence quantum yields of unity. When equipped with a suitable group that selectively reacts for instance with amines, F-BODIPYs can be used as potent dual labels for the quantification of primary amino groups on surfaces by X-ray photoelectron spectroscopy (XPS) and fluorescence, two powerful yet complementary tools for the analysis of organic surface functional groups. The advantage of reactive F-BODIPYs is that they allow a fast and non-destructive mapping of the labelled supports with conventional fluorescence scanners and a subsequent quantification of selected areas of the same sample by the potentially traceable XPS technique. The performance is exemplarily shown here for the assessment of the amino group density on SiO2 supports, one of the most common reactive silica supports, in particular, for standard microarray applications.
A new class of boron-dipyrromethene (BDP or BODIPY) dyes was obtained by phenanthrene fusion to the β-pyrrole positions, absorbing in the wavelength range of important laser sources. Despite a 'propeller-like' distorted structure in the crystalline state, the chromophore absorbs (log ε ≥ 5) and fluoresces (Φf ≥ 0.8) strongly and can be easily turned into a fluorescence light-up probe. Incorporation into latex beads produces bright and photostable single-dye and Förster Resonance Energy Transfer (FRET) particles for microscopy applications.
El desarrollo de receptores sintéticos complejos basados en conceptos de la química supramolecular no garantiza en ocasiones un reconocimiento molecular selectivo. Una alternativa en ciertos aspectos más simple y prometedora es el empleo de materiales híbridos orgánico-inorgánicos preparados mediante la funcionalización de sólidos inorgánicos porosos con receptores sintéticos adecuados. El anclaje de estos sistemas coordinantes a un soporte sólido da lugar a ciertos efectos sinérgicos que no están presentes ni en el material inicial ni en el receptor por separado y que sugieren que estos nuevos materiales híbridos pueden ser empleados en el desarrollo de nuevos sensores y nuevos protocolos de reconocimiento molecular y/o iónico.
The development of synthetic receptors based in supramolecular chemistry concepts will no allow a selective molecular recognition. A more simple, convenient and innovative approach relies on the use of organic-inorganic hybrid materials. These hybrid materials will be prepared by the grafting of certain synthetic receptors onto porous inorganic solids. The grafting of these coordinating systems onto a solid support leads to synergic effects that are hardly achievable with only the synthetic receptors or the solids alone. The presence of these synergic effects suggests that these organic-inorganic hybrid materials will be used for the development of novel sensory systems and novel molecular and/or ionic recognitionprotocols.
A family of N-crowned 4-p-(aminophenyl)-2,6-diphenylpyridines DA (1-6) has been synthezised, characterized, and studied as potential hosts for the signaling of cationic and anionic guests. The ditopic probes contain two coordination sites, a monodentate 2,6-diphenylpyridine and an anilino group with macrocycles of different ring size, denticity, and type of secondary heteroatom (O and/or S). X-ray structure analysis of aza-oxa-thia-crowned 5 indicated a largely planar chromophore. Optical spectroscopic and electrochemical studies revealed that the anilino-type donor (D) and the 2,6-diphenylpyridine acceptor (A) are strongly -conjugated, entailing intense intramolecular charge-transfer absorption bands at 340 nm. Binding studies with protons and metal ions (M = Cu2+, Zn2+, Hg2+, Fe3+, Pb2+, Ni2+, Cd2+) showed shifts of the band to the visible (440 nm) when coordination at the pyridine group occurs, strengthening its acceptor character. In contrast, no band in the visible is formed if binding takes place at the anilino group. Three different responses were found for various pairs of DA and M: selective metal coordination to D or A as well as coordination at both sites. A selective response was found for 5 and Hg2+. Because of the multitude of coordination-induced effects, the DA-M ensembles were further employed for differential anion sensing. In this protocol, the addition of an anion X to a certain, weakly coordinated DA-M can (i) lead to the formation of a ternary ion pair complex (DA-M-X), (ii) change the preference for A or D coordination, (iii) induce dissociation of the complex, or (iv) can have no effect. Various patterns of absorption changes were obtained as a result of different responses (i)-(iv) of the DA-M's in the presence of various X's. Data analysis yielded recognition patterns for acetate, F- and CN-, demonstrating the potential of simple chromogenic host-guest pairs for differential anion signaling.
An asymmetrically core-extended boron-dipyrromethene (BDP) dye was equipped with two electron-donating macrocyclic binding units with different metal ion preferences to operate as an ionically driven molecular IMPLICATION gate. A Na+-responsive tetraoxa-aza crown ether (R2) was integrated into the extended π system of the BDP chromophore to trigger strong intramolecular charge transfer (ICT2) fluorescence and guarantee cation-induced spectral shifts in absorption. A dithia-oxa-aza crown (R1) that responds to Ag+ was attached to the meso position of BDP in an electronically decoupled fashion to independently control a second ICT1 process of a quenching nature. The bifunctional molecule is designed in such a way that in the absence of both inputs, ICT1 does not compete with ICT2 and a high fluorescence output is obtained (InA=InB=0→Out=1). Accordingly, binding of only Ag+ at R1 (InA=1, InB=0) as well as complexation of both receptors (InA=InB=1) also yields Out=1. Only for the case in which Na+ is bound at R2 and R1 is in its free state does quenching occur, which is the distinguishing characteristic for the InA=0 and InB=1→Out=0 state that is required for a logic IMPLICATION gate and Boolean operations such as IF-THEN or NOT.
A family of azo dyes containing amide (1), urea (2), thiourea (3), carbamate (4) or amino (5) hydrogen-bond donating groups were synthesized and their response toward anions was studied. Acetonitrile solutions of 1-5 show bright yellow colours, due to charge-transfer bands in the 375-400 nm region, slightly modulated by the electron donor strength of the group attached to the 4 end of the 4-nitroazobenzene scaffold. Anions of different shape and size (i.e., spherical F-,Cl-, Br- and I-, planar and tetrahedral oxoanions such as NO3-, H2PO4- and HSO4-, carboxylates such as acetate and benzoate and the linear anions cyanide and thiocyanate) were employed in the recognition studies. Two different effects were distinguished: (i) bathochromic shifts of <40 nm to pale orange, due to anion coordination, and (ii) strong red shifts of ca. 200 nm with a concomitant colour change to blue, due to deprotonation. This behaviour was explained as a balance between the deprotonation tendency of the binding sites in the different receptors and the proton affinities of the anions. Semiempirical calculations were carried out to evaluate the hydrogen bond-donating abilities of the anions and the dyes and a good correlation with the experimentally found values was observed. Stability constants for the receptor-anion complexes were determined spectrophotometrically and the different responses toward fluoride and acetate were assessed by NMR titration experiments. Finally, as a special case, we also report the use of this family of compounds as colorimetric carbon dioxide sensors through reaction with the unprotonated forms of the azo dyes.
DNA Microarrays, auch als DNA-Chips bekannt, werden verwendet,
um das Vorkommen von Genen bzw. Gentranskripten zu analysieren.
Sie finden breite Anwendung in der Diagnostik, der Genomanalyse
und bei der Erstellung von Genexpressionsprofilen. Vor der Analyse
muß auf Grund der oftmals geringen Menge an Probenmaterial eine
Vervielfältigung der Probe durchgeführt werden, die jedoch leicht zu
Fehlern führt. Im Rahmen dieses Projektes werden zwei experimentelle
Ansätze verfolgt, durch die ohne einen Verlust an Sensitivität
eine Vervielfältigung der Probe vermieden werden kann, 1) das Etablieren
eines RCA-basierten Microarray Assays und 2) die Optimierung
des Assays für die Detektion der Fluoreszenzsignale.
The fluorescence quantum yield Φ f is a key property that characterizes the ability of a fluorophore to convert absorbed photons into emitted photons under various environmental conditions. Knowledge of it is important for the successful development of fluorometric indication and visualization methods and for the understanding of light-driven processes in the natural sciences. Φ f is a molecule- or material-related parameter and can thus significantly differ from the fraction of absorbed photons that are actually measured as the fluorescence signal of a certain sample, e.g., when the signal is modulated by reabsorption, self-quenching or polarization effects. The determination of Φ f can be performed in absolute measurements or relative to a fluorescent standard material with a known Φ f by optical or calorimetric methods. Here the different procedures and techniques are described and compared, and the suitability of a representative number of dyes that have been proposed as fluorescence reference materials in the past 25 years is discussed. Besides addressing specific issues such as low-temperature measurements and the appropriate choice of standards and measurement conditions, we conclude with recommendations for better standardization and quality management in this area.
Acoustic levitation is used as a newtool to study concentration-dependent processes influorescence
spectroscopy. With this technique, small amounts of liquid and solid samples can be measured
without the need for sample supports or containers, which often limits signal acquisition and
can even alter sample properties due to interactions with the support material. We demonstrate
that, because of the small sample volume, fluorescence measurements at high concentrations
of an organic dye are possible without the limitation of inner-filter effects, which hamper such
experiments in conventional, cuvette-based measurements. Furthermore, we show that acoustic
levitation of liquid samples provides an experimentally simple way to study distance-dependent
fluorescence modulations in semiconductor nanocrystals. The evaporation of the solvent during
levitation leads to a continuous increase of solute concentration and can easily be monitored by
laser-induced fluorescence.
A triply benzocrown-ether-functionalized trialkynylmesitylene derivative with C3 symmetry as well as its linear analogue have been synthesized and their optical properties have been studied by UV/Vis absorption, steady-state and time-resolved fluorescencece spectroscopy. The spectroscopic investigation of the uncomplexed compounds revealed the nature of the electronic and excitonic communication pathway in the ground and excited states of the all-meta-substituted chromophore system. Upon cation complexation, the octopolar character of the free trialkynyl compound becomes dipolar and finally returns to octopolar in the fully complexed species.