Filtern
Dokumenttyp
- Zeitschriftenartikel (11)
Sprache
- Englisch (11)
Schlagworte
- Crystal structure (11) (entfernen)
A bisamidopyridine-type receptor, N,N'-bis(6-methyl-2-pyridyl)pyridine-2,6-dicarboxamide (1), and its CoIII complex were prepared and their X-ray structures were compared to those of N,N'-diphenylpyridine-2,6-dicarboxamide (2) and CoIII(2)2. Introduction of the two additional coordinative groups resulted in second-order interactions between the central ion and the nitrogen atoms of the terminal pyridine moieties in the crystalline state. Solution studies in acetonitrile revealed the importance of these interactions for the ligand's metal ion recognition ability. Whereas 2 only binds to PbII and CuII, 1 yields complexes with a majority of the heavy and transition metal ions studied, CoII, NiII, CuII, ZnII, FeIII, FeII, HgII, and PbII, respectively. The cation binding properties in solution were investigated by absorption spectroscopy and in the case of 1-MII/III, the formation of two spectroscopically distinguishable types of complexes was found. Protonation experiments and theoretical considerations helped to gain further insight into possible modes of coordination in solution.
In our laboratory more than 100,000 urinary calculi have been analysed since 1972. Amongst this huge sample, 15 specimens originating from a total of eight patients were observed showing similar characteristics but escaping unambiguous identification with any of the substances that have been described so far in urinary concrements. Therefore, the unknown substance was submitted to a more extended analytical regimen. Structural analysis by x-ray crystallography turned out to be most successful, identifying the unknown material as uric acid monohydrate. Uric acid monohydrate crystallizes in the monocline space group P21/c. Within the crystal, uric acid and water molecules form continuous layers by hydrogen bonds. This is in contrast to uric acid in its water free and its dihydrate forms, which both crystallize by forming 3-dimensional networks To the best of our knowledge , the existence of a monohydrate form of uric acid has not been reported so far. Accordingly, this is the first report on uric acid monohydrate as a urinary stone component. The frequency of only 0.015% in our survey indicates that uric acid monohydrate is rarely the main component in concrements, in contrast to uric acid and uric acid dihydrate with frequencies of 10% and 6%, respectively. The infrared spectrum of uric acid monohydrate is very similar to that of the other crystal forms of uric acid. Because of this similarity and its low frequency, uric acid monohydrate may have been overlooked as a component of urinary concrements. X-ray diffraction allows for better differentiation in routine stone analysis. All samples of uric acid monohydrate were found by solid state NMR spectroscopy to be highly contaminated by amorphous material. This material consisted of long aliphatic chains reminiscent of lipids and fatty acids, respectively. Concrements consisting of other forms of uric acid or urate lacked this amorphous component. Therefore, a role of this aliphatic material has to be taken into consideration when discussing the conditions that may favour the rare formation of concrements from uric acid monohydrate. As for as the metabolic situation of the affected patients is concerned, no common peculiarities became evident by a retrospective survey.
The X-ray crystallographic study of the macrocyclic tetrakis-N[N-2-hydroxyethyl-piperazino]calix[4]resorcinarene·3CH3CH2OH·H2O (3) reveals a self-assembled dimeric capsule-like complex held together by an array of intermolecular hydrogen bonds. Pairs of concave molecules associate directly in bowl-to-bowl fashion and enclose an accessible supramolecular cavity of Å3 hosting one water and three ethanol molecules. The supramolecular arrangement displays alternating layers of facing bowls and interlocking lower rim aliphatic moieties. The helical conformation of the 2-hydroxyethyl piperazinomethyl moieties displays chirality of a bimolecular capsule frozen in the solid state. 3 crystallises in the triclinic space group P-1 with two symmetry independent molecules in the asymmetric unit. Two enantiomeric capsules form a racemic pair in the unit cell.
Crystal structures of four different di-aryl-1,3,4-oxadiazole compounds (aryl = 2-pyridyl-, 3-pyridyl-, 2-aminophenyl-, 3-aminophenyl-) are determined. Crystallization of di(2-pyridyl)-1,3,4-oxadiazole yielded monoclinic and triclinic polymorphs. The structures are characterized by the occurrence of ππ interactions. Additionally, in case of the aminophenyl compounds intra- as well as intermolecular hydrogen bonds are found that influence the packing motif as well. Since these molecules are often used as ligands in metalorganic complexes similarities and differences of the molecular conformation between the molecules in the pure crystals and that of the ligands in the complexes are discussed.
The new ligand 4´-(4´´´-pyridyl-N-oxide)-2,2´:6´,2´´-terpyridine (pyNoxterpy) and its homoleptic iron(II) complex have been synthesised, and structural and spectroscopic studies have been carried out. The obtained results have been compared with the reported data for the parent ligand 4´-(4´´´-pyridyl)-2,2´:6´,2´´-terpyridine (pyterpy) and its homoleptic iron(II) complex. Significant differences between the spectral and electrochemical properties of the metal complexes have been found, derived from the changes in the electronic properties of the coordinated ligands.
Structure determination of two asymmetrically substituted oxadiazoles from powder diffraction data
(2008)
The crystal structures of the 1,3,4 oxadiazole compounds N,N-dimethyl-N-[4-(1,3,4-oxadiazol-2-yl)phenyl]amine (1) and 2-methyl-5-phenyl-1,3,4-oxadiazole (2) have been determined. In case of 1 no adequate crystals were available; therefore the structure was solved at room temperature from X-ray powder diffraction data using the method of simulated annealing. This solution is compared to a second one obtained by applying the molecular replacement method. Subsequent Rietveld refinements combined with the so called two stage method based on the data collected to 1.6 Å resolution yielded an Rwp value of 7.27% for 1. Compound 1 crystallizes in the orthorhombic space group P212121 with lattice parameters of a = 7.599(4) Å, b = 6.004(2) Å, c = 21.736(3) Å. The crystal structure of 2 was solved by means of single crystal structure analysis (monoclinic space group P21/c, a = 8.010(3) Å, b = 10.783(4) Å, c = 19.234(7) Å, β = 90.794(9)°).
A systematic structural investigation of R-phenyl-substituted 2,2':6',2"-terpyridines, a family of mono- and bifunctional charge transfer (CT)-operated fluorescent reporters for protons and metal ions, is presented. These molecules are equipped with non-binding and analyte coordinating donor substituents R (R = CF3, H, OMe, OH, DMA, A15C5 equaling monoaza-15-crown-5) of various donor strength and display CT-controlled spectroscopic properties and communication of analytereceptor interactions. The crystal structures of the neutral fluorescent probes are compared to the structures of their terpyridine-alkylated or -protonated counterparts that represent model systems for acceptor protonation or cation coordination. The aim is here a better understanding of the complexation-induced structural and spectroscopic changes and the identification of common packing motifs of bpb-R thereby taking into account the importance of terpyridine building blocks for the construction of supramolecular systems and coordination arrays revealing ππ interactions.
Three new compounds have been synthesized based on the molecular motif 2-[2,6-bis(trifluoromethyl)phenyl]-5-phenyl-1,3,4-oxadiazole, with subsequent CF3-substitution in the ortho-positions of the phenylene ring. The crystal structures of the compounds have been determined by single crystal X-ray diffraction. All compounds have a monoclinic structure. The solid state structure of the compounds is influenced by the electronic properties of the fluorine atoms, leading to the occurrence of CH...F, and CF...ϖ interactions, partly replacing ϖϖ interactions usually observed in the crystal structures of 2,5-diphenyl-1,3,4-oxadiazole derivatives. Other significant interactions than those involving fluorine appear only in rare cases. The strong impact of the fluorine atoms on the intra- and intermolecular interactions, and the molecular conformation lead to novel inputs for the understanding of molecular recognition, supramolecular assembly, and crystal packing of fluorine containing compounds.
The title compounds Zn2[S2CN(n-C4H9)2]4 1 and Zn2[(S(SO)CN(n-C4H9)2)(S2CN(n-C4H9)2)]2 3 build mixed crystals in the ratio 0.42: 0.58. Each compound forms dimers, in which the monomer moieties are related via a two-fold axis, coinciding with that of the monoclinic space group C2/c. The lattice parameters are a = 23.581(9), b = 17.112(5), c = 16.372(9) Å, and β = 128.33(3)°.