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Nitrogen sources of oligoporus placenta and trametes versicolor evaluated in a 2³ experimental plan
(2012)
Four full-factorial 2³ experimental plans were applied to evaluate the nitrogen (N) sources of Oligoporus placenta and Trametes versicolor and their interaction with the atmospheric N2-assimilating bacterium Beijerinckia acida. The effects of N from peptone, of sapwood and of N from gaseous N2 on fungal, bacterial and fungal–bacterial activity were investigated. The activities were determined by quantification of biomass, formation of CO2, consumption of O2 and laccase activity. The significance of each effect was tested according to t-test recommendation.
The activity of both fungi was enhanced by peptone rather than sapwood or gaseous N2. Nevertheless, comparative studies under an N2-free gas mixture as well as under air revealed that the presence of N2 affected bacterial growth and bacterial–fungal cocultivations. Elemental analysis isotope ratio mass spectrometry (IRMS) of the bacterial and fungal biomass enabled estimation of N transfer and underlined gaseous N2 as requisite for fungal–bacterial interactions. Combining full-factorial experimental plans with an analytical set-up comprising gas chromatography, IRMS and enzymatic activity allowed synergistic effects to be revealed, fungal N sources to be traced, and symbiotic fungal–bacterial interactions to be investigated.
Isotope ratio mass spectrometry (IRMS) is an advanced method to investigate carbon (C) and nitrogen (N) in organic samples. In particular, the N content, its isotope signature and the C/N ratio reveal important facts of nutrient cycling, niche separation and ecological food webs. In this study, the characteristics of N turnover of wood decomposing microorganisms were investigated.
The growth of the white rot causing basidiomycete Trametes versicolor is enhanced after addition of ammonia or urea, whereas the brown rot causing Oligoporus placenta is not accelerated. In addition, an interaction of each fungus with atmospheric N2 assimilating (diazotrophic) bacteria was investigated. Cultivation experiments with a gas mixture of 15N2/O2 and subsequent IRMS analysis of dry biomass of the diazotrophs Azotobacter croococcum, Beijerinckia acida and Novosphingobium nitrogenifigens revealed that they assimilated up to 12% of their N from N2. The experiments reflected N availability as a prerequisite for efficient growth of decomposing basidiomycetes and diazotrophs. Fungal–bacterial co-cultivation experiments showed that depending on the growth characteristics and bacterial N2 assimilation activity N is transferred from certain bacteria into fungal biomass. Thus, the experiments gave a first indication of an interaction between wood decomposing basidiomycetes and diazotrophs, which is a novel pathway of fungal N acquisition.
The white-rot fungus Hypholoma fasciculare coexists with a bacterial community that uses low-molecular weight carbon sources provided by fungal, extracellular enzyme activities. Since fungal development on wood is limited by the availability of nitrogen (N), bacteria could contribute to the N supply. To prove or disapprove an interaction in terms of N transfer, N sources of the fungus and the coexisting bacterial isolates were investigated, and the bacterial N2 fixation was quantified. Fungal, fungal—bacterial and bacterial wood decomposition was analysed by Fourier transform infrared spectroscopy (FTIR), mass loss and surface pH. Microbial N preferences were investigated by elemental analysis isotope ratio mass spectrometry (IRMS). In addition, diazotrophic activity was explored after cultivation under a 15N2/O2 atmosphere. Decomposition was similar with and without bacteria and both H. fasciculare and coexisting bacteria preferred reduced N species, such as urea, ammonium and organic N. In most of the bacteria, the 15N abundance in the biomass increased significantly but to a low extent if they were cultivated under a 15N2/O2 atmosphere. This effect is considered an artefact and attributed to adsorption rather than to bacterial N2 fixation activity. Hence, the bacteria coexisting with H. fasciculare rather competed for the same N sources than supported fungal N supply by diazotrophic activity.
Boron isotope studies on technical materials and geological and environmental samples are one hot topic in nowadays isotope research. Provenance studies of artefacts, food and other products might become another one, as several recent studies demonstrate. Typically boron isotope determinations have been carried out by TIMS. To open up this research field to a broader scientific community we developed two analytical procedures for boron isotope determinations based on single collector SF-ICPMS combined with a sample preparation procedure consisting of dry-ashing and a three step ion chromatographic boron-matrix separation. The developed procedures consist of one low resolution (LR) and one medium resolution (MR) procedure. The repeatability for the δ11B determination in three independently measured aliquots lies between 0.2 and 0.8‰ for the LR procedure and between 0.3 and 1.5‰ for the MR procedure. The expanded uncertainties with a coverage factor of k=2 range between 1.4 and 1.6‰ for the LR procedure and between 2.9 and 3.2‰ for the MR procedure. The accuracy, expressed as average deviation from the reference values, is 0.43‰ for the LR procedure and 0.33‰ for the MR procedure. To test the practicability of the procedures the matrix tolerance has been investigated as well and was found to be up to 2 mg kg-1 of alkaline and alkaline earth elements in the final measurement solution containing 100 µg kg-1 boron. Thus a highly efficient matrix separation for SF-ICPMS boron isotope determinations is required, similar to TIMS.
Isotope reference materials are needed to calibrate and validate analytical procedures used for the determination of isotope amount ratios, procedurally defined isotope ratios or so-called δ values. In contrast to the huge analytical progress in isotope ratio analytics, the production of isotope reference materials has not kept pace with the increasing needs of isotope analysts. Three representative isotope systems are used to explain the technical and non-technical difficulties and drawbacks, on one hand, and to demonstrate what can be achieved at its best, on the other hand. A clear statement is given that new isotope reference materials are needed to obtain traceable and thus comparable data, which is essential for all kinds of isotope research. The range of available isotope reference materials and δ reference materials should be increased and matrix reference materials certified for isotope compositions or δ values, which do not exist yet, should be provided.
Isotope reference materials are essential to enable reliable and comparable isotope data. This article reviews the work in this field within the past years. The focus is on all stable elements, except for classical stable isotopes (H, C, N, O, S) and for radioactive elements. Currently available isotope reference materials are listed. The limitations of synthetic isotope mixtures being used to characterize these materials are discussed, as well as the limitations of the isotope reference materials, such as uncertainty and homogeneity. The needs for present research on isotope variations are being considered and are compared to the limitations of current isotope reference materials. This disagreement between both can only be solved by providing isotope reference materials defining a δ-scale for each element of interest. Such materials should be provided with additional data on isotope abundances whenever possible. As an outlook a possible outline for a new program on isotope reference materials is discussed.
The variation of isotope abundance ratios is increasingly used to unravell natural and technical questions. In the past the investigation and interpretation of such variations was the field of a limited number of experts. With new upcoming techniques and research topics in the last decades, such as provenance and authenticity of food, the number of published isotope data strongly increased. The development of inductively coupled plasma mass spectrometers (ICPMS) from an instrument for simple quantitative analysis to highly sophisticated isotope abundance ratio machines influenced this process significantly. While in former times only experts in mass spectrometry were able to produce reproducible isotope data, nowadays many laboratories, never been in touch with mass spectrometry before, produce isotope data with an ICPMS. Especially for such user isotope reference materials (IRM) are indispensible to enable a reliable method validation. The fast development and the broad availability of ICPMS also lead to an expansion of the classical research areas and new elements are under investigation. Here all users require IRM to correct for mass fractionation or mass discrimination or at least to enable isotope data related to a common accepted basis. Despite this growing interest suitable IRM are still lacking for a number of isotope systems such as magnesium.
A modified Pb–matrix separation procedure using NH4HCO3 solution as eluent has been developed and validated for determination of Pb isotope amount ratios by thermal ionization mass spectrometry. The procedure is based on chromatographic separation using the Pb·Spec resin and an in-house-prepared NH4HCO3 solution serving as eluent. The advantages of this eluent are low Pb blanks (<40 pgmL-1) and the property that NH4HCO3 can be easily removed by use of a heating step (>60 °C). Pb recovery is >95 % for water samples. For archaeological silver samples, however, the Pb recovery is reduced to approximately 50 %, but causes no bias in the determination of Pb isotope amount ratios. The validated procedure was used to determine lead isotope amount ratios in Trojan silver artefacts with expanded uncertainties (k=2) <0.09 %.
The quantitative analysis of toxic metals in plastics is very important for different sectors of industry and daily life. Many routine procedures have been established based on X-ray fluorescence or inductively coupled plasma atomic emission spectrometry. However, all of them require suitable reference materials to calibrate or validate. These reference materials ideally are being certified by reference procedures. The development of such reference procedures for sulfur and the four toxic elements cadmium, chromium, mercury and lead in plastics is described here. The procedures are based on double isotope dilution mass spectrometry including analyte–matrix separation. The applied mass spectrometric techniques are thermal ionization mass spectrometry as well as inductively coupled plasma mass spectrometry. Memory effects of mercury and dissolution of chromium(III) oxide have been considered especially. The expanded uncertainties have been improved from the percent range down to the per mill range during the development of the procedure from the early analysis of BCR-680/681 to the recent analysis of CCQM-P106. With the fully developed procedures expanded uncertainties (k = 2) between 0.1 and 0.4% for cadmium, chromium, lead and sulfur and around 1% for mercury can be achieved. The so developed procedures have been successfully applied to the certification of reference materials as well as to intercomparisons organized by CCQM.
An ICP-MS equipped with collision cell, sector field and multi-collector technology has been applied to developing analytical procedures for Fe in terms of isotope ratio measurements and isotope dilution analysis. Therefore a detailed study on the reduction of molecular interferences by a variety of collision gases (He, Ar, Kr, H2, D2 and N2) was performed. The efficiency of the reduction has been checked by high resolution mass scans. The argon based interferences disturbing the determination of 54Fe and 56Fe could be completely removed when using Faraday detectors. The interferences on mass 57 could be reduced to a level which enables accurate measurements. Also, the 40Ar12C interference, which disturbs the chromium correction, could be completely removed. Reproducibilities of 0.01% could be reached for 54Fe/56Fe isotope ratios and 0.02% for 57Fe/56Fe isotope ratios. Under these measurement conditions a sensitivity of 1.2 V per 50 µg kg1 Fe is available. This corresponds to 1.5 × 109 cps per mg kg1. Based on these results highly accurate procedures for Fe isotope ratio determinations were set up, reaching a performance level superior to that of other ICP-MS instruments. Consequently, IDMS procedures were developed on this basis in order to perform certification measurements at the highest metrological level. The first application was the contribution to the Fe reference value by IMEP-12, an interlaboratory comparison with approximately 350 participants worldwide. The analysed Fe mass content is 0.2150 mg kg1 with its expanded uncertainty (k= 2) of 0.0012 mg kg1(0.56%), which is ten times less than the uncertainty of the second certification laboratory. Another application was the certification campaign of the two reference materials Tea Leaves and Polish Herbs. The results obtained with the ICP-MS procedure, 542 ± 11 mg kg1 and 543 ± 12 mg kg1, were compared with the results analysed by TIMS, 541 ± 12 mg kg1 and 541 ± 13 mg kg1, and agree very well within the stated uncertainties (k= 2). The results presented demonstrate quite well the suitability of the developed IDMS procedures for certification or reference measurements.
The main wood degraders in aerobic terrestrial ecosystems belong to the white- and brown-rot fungi, where their biomass can be created on wood decay only. However, total sulfur (S) concentration in wood is very low and only little is known about the different sulfur compounds in wood today. Sulfur-starved brown-rot fungi Gloeophyllum trabeum and Oligoporus placenta were incubated on sterilized pine wood blocks whereas Lentinus cyathiformis and the white-rot fungi Trametes versicolor were incubated on sterilized beech wood blocks. After 19 weeks of incubation, the S oxidation status was analyzed in wood, in degraded wood, and in biomass of wood-degrading fungi by synchrotron based S K-edge XANES, and total S and sulfate were quantified. Total sulfur and sulfate content in pine wood blocks were approximately 50 and 1 µg g-1, respectively, while in beech wood approximately 100 and 20 µg g-1 were found, respectively. Sulfur in beech was dominated by sulfate-esters. In contrast, pine wood also contained larger amounts of reduced S. Three out of four selected fungi caused a reduction of the S oxidation state in wood from oxidized S (sulfate-ester, sulfate) to intermediate S (sulfonate, sulfoxide) or reduced S (thiols, e.g., proteins, peptides, enzyme cofactors). Only O. placenta shifted thiol to sulfonate. Growth experiments of these fungi on selective minimal media showed that in particular cysteine (thiol), sulfonates, and sulfate enhanced total mycelium growth. Consequently, wood-degrading fungi were able to utilize a large variety of different wood S sources for growth but preferentially transformed in vivo sulfate-esters and thiol into biomass structures.
Boron isotope compositions of crop plants: A new tracer for the origin and authenticity of food
(2009)
Development and validation of a method to determine the boron isotopic composition of crop plants
(2011)
We present a comprehensive chemical and mass spectrometric method to determine boron isotopic compositions of plant tissue. The method including dry ashing, a three-step ion chromatographic boron–matrix separation, and 11B/10B isotope ratio determinations using the Cs2BO2+ graphite technique has been validated using certified reference and quality control materials. The developed method is capable to determine δ11B values in plant tissue down to boron concentrations of 1 mg/kg with an expanded uncertainty of ≤1.7‰ (k = 2). The determined δ11B values reveal an enormous isotopic range of boron in plant tissues covering three-quarters of the natural terrestrial occurring variation in the boron isotopic composition. As the local environment and anthropogenic activity mainly control the boron intake of plants, the boron isotopic composition of plants can be used for food provenance studies.