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The microbial community in anoxic rice field soil produces CH4 over a wide temperature range up to 55°C. However, at temperatures higher than about 40°C, the methanogenic path changes from CH4 production by hydrogenotrophic plus acetoclastic methanogenesis to exclusively hydrogenotrophic methanogenesis and simultaneously, the methanogenic community consisting of Methanosarcinaceae, Methanoseataceae, Methanomicrobiales, Methanobacteriales and Rice Cluster I (RC-1) changes to almost complete dominance of RC-1. We studied changes in structure and function of the methanogenic community with temperature to see whether microbial members of the community were lost or their function impaired by exposure to high temperature. We characterized the function of the community by the path of CH4 production measuring δ13C in CH4 and CO2 and calculating the apparent fractionation factor (αapp) and the structure of the community by analysis of the terminal restriction fragment length polymorphism (T-RFLP) of the microbial 16S rRNA genes. Shift of the temperature from 45°C to 35°C resulted in a corresponding shift of function and structure, especially when some 35°C soil was added to the 45°C soil. The bacterial community (T-RFLP patterns), which was much more diverse than the archaeal community, changed in a similar manner upon temperature shift. Incubation of a mixture of 35°C and 50°C pre-incubated methanogenic rice field soil at different temperatures resulted in functionally and structurally well-defined communities. Although function changed from a mixture of acetoclastic and hydrogenotrophic methanogenesis to exclusively hydrogenotrophic methanogenesis over a rather narrow temperature range of 42-46°C, each of these temperatures also resulted in only one characteristic function and structure. Our study showed that temperature conditions defined structure and function of the methanogenic microbial community.
Most of the methane (CH4) emission from rice fields is derived from plant photosynthates,
which are converted to CH4. Rice cluster I (RC-1) archaea colonizing the
rhizosphere were found to be the methanogens responsible for this process. Hence, RC-1
methanogens seem to play a crucial role in emission of the greenhouse gas CH4. We
determined the community composition and activity of methanogens colonizing the
roots of eight different rice cultivars after growth on both Italian rice soil and river bank
soil, which contained different communities of methanogenic archaea. The community
composition was analyzed by terminal restriction fragment length polymorphism and
cloning/sequencing of the archaeal 16S rRNA gene and the mcrA gene coding for a
subunit of the methyl coenzyme M reductase. When grown on rice field soil, the
methanogenic community of the different rice cultivars was always dominated by RC-1
methanogens. In contrast, roots were colonized by Methanomicrobiales when grown on
river bank soil, in which RC-1 methanogens were initially not detectable. Roots
colonized with Methanomicrobiales compared with RC-1 exhibited lower CH4 production
and CH4 emission rates. The results show that the type of methanogens colonizing
rice roots has a potentially important impact on the global CH4 cycle.
Forefields of receding glaciers are unique and sensitive environments representing natural chronosequences. In such habitats, microbial nitrogen fixation is of particular interest since the low concentration of bioavailable nitrogen is one of the key limitations for growth of plants and soil microorganisms. Asymbiotic nitrogen fixation in the Damma glacier (Swiss Central Alps) forefield soils was assessed using the acetylene reduction assay. Free-living diazotrophic diversity and population structure were resolved by assembling four NifH sequence libraries for bulk and rhizosphere soils at two soil age classes (8- and 70-year ice-free forefield). A total of 318 NifH sequences were analyzed and grouped into 45 unique phylotypes. Phylogenetic analyses revealed a higher diversity as well as a broader distribution of NifH sequences among phylogenetic clusters than formerly observed in other environments. This illustrates the importance of free-living diazotrophs and their potential contribution to the global nitrogen input in this nutrient-poor environment. NifH diversity in bulk soils was higher than in rhizosphere soils. Moreover, the four libraries displayed low similarity values. This indicated that both soil age and the presence of pioneer plants influence diversification and population structure of free-living diazotrophs.
A mathematical model to predict the heating-up in open air wood chip piles has been developed. This model includes the heat production from chemical, physical and microbial exothermal processes. In the manuscript the laboratory experiments needed to develop and validate the model are described. In addition, temperature and gas concentrations were measured in two large-scale wood piles (volumes bigger than 1000 m³), in order to provide the applicability of the model to large-scale scenarios. The predictions of the model and the large-scale experimental data showed good agreement concerning the maximum temperature reached inside an open air wood pile. Special attention has been devoted to the microbial processes, since they proved to be the most important cause of heat production in the early stages of storage. This work is intended to help in predicting and thus avoiding possible self-ignition scenarios for this type of wood storage.
The temperature and gas concentrations in a
newly established pine-wood debris pile of 20 m × 15 m ×
6 m in dimensions (approximately 400 tons of fresh weight
material) were monitored for 150 days. Temperature was
measured at ten different positions within the pile, while
concentrations of CO2, O2, CO and CH4 were taken at four
different representative locations. The pile was characterized
by a strong temperature increase within the first 10–
12 days of storage. Results of the gas analysis in this period
suggest that the temperature increase was caused by microbial
processes. In particular, reduced oxygen concentration
and almost complete absence of methane indicate mainly
aerobic respiration processes. Effects of weather conditions
on the temperature/gas distribution and time evolution are
also discussed in the paper.
The wood protection industry has refined their products from chrome-, copper-, and arsenate-based wood preservatives toward solely copper-based preservatives in combination with organic biocides. One of these is Cu-HDO, containing the chelation product of copper and N-cyclohexyldiazenium dioxide (HDO). In this study, the fate of isotope-labeled (13C) and nonlabeled (12C) Cu-HDO incorporated in wood sawdust mixed with soil was investigated. HDO concentration was monitored by high-pressure liquid chromatography. The total carbon and the δ13C content of respired CO2, as well as of the soil-wood-sawdust mixture, were determined with an elemental analyzer-isotopic ratio mass spectrometer. The concentration of HDO decreased significantly after 105 days of incubation, and after 24 days the 13CO2 concentration respired from soil increased steadily to a maximum after 64 days of incubation. Phospholipid fatty acid-stable isotope probing (PFA-SIP) analysis revealed that the dominant PFAs C19:0d8,9, C18:0, C18:1ω7, C18:2ω6,9, C17:1d7,8, C16:0, and C16:1ω7 were highly enriched in their δ13C content. Moreover, RNA-SIP identified members of the phylum Acidobacteria and the genera Phenylobacterium and Comamonas that were assimilating carbon from HDO exclusively. Cu-HDO as part of a wood preservative effectively decreased fungal wood decay and overall microbial respiration from soil. In turn, a defined bacterial community was stimulated that was able to metabolize HDO completely.
Flame retarded wood-plastic composites (WPCs) should allow safe application in areas of fire risk. Halogen-free flame retardants can contain high amounts of nitrogen, phosphorus or sulphur, which may serve as nutrition source for wood degrading fungi and accelerate wood decay. Therefore, the material resistance of WPCs with each of four flame retardants against both fire or fungal decay was examined in comparison to WPC without flame retardant. Expandable graphite showed the best performance against fire in cone calorimetry and radiant panel testing. Two ammonium polyphosphates and a third nitrogen-containing flame retardant were not as effective. Contrary to the possibility that flame retardants might enhance fungal decay of WPC, the opposite effect occurred in case of the wood-degrading fungi Trametes versicolor and Coniophora puteana according to determination of mass loss and decrease of bending modulus of elasticity. Only the surface mould Alternaria alternata slightly increased the degradation of WPCs with nitrogen-containing flame retardants compared to WPC without flame retardant according to mass loss data and FTIR-ATR analyses. Finally, WPC including expandable graphite as flame retardant was effective against both fire and fungal decay.