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- 2019 (51) (entfernen)
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- 1.9 Chemische und optische Sensorik (51) (entfernen)
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Fluorescent molecularly imprinted polymers (MIPs) for sensing of phosphorylated protein epitopes
(2019)
Early detection of cancer is instrumental for successful therapeutic outcomes, but it is presently a considerable challenge. Biopsy of potentially cancerous tissues is the gold standard in medicine for the diagnosis and prognosis of this disease; however, it may not be possible in many cases due to tumour position or other complications. Liquid biopsy-based detection of specific cancer markers in biological fluids can be easily performed via immunoanalytical techniques. However, antibody-based methods suffer from high cost of tumour specific antibodies due to difficult and lengthy production. Furthermore, antibodies may have limited specificity to the target molecule, and limited lifetimes. The so-called “plastic antibodies” as MIPs can be a more affordable, reliable and stable alternative to antibodies, especially for cancer diagnostics.
Our goal is to create MIP particles to selectively bind cancer biomarkers and rapidly display a fluorescence change upon interaction with molecules of interest. Epitopes containing the phosphorylated tyrosine (pY) motif such as tripeptide YpYG and tetrapeptide pYEEI were selected as target analytes. Cancers may disrupt tyrosine phosphorylation processes regulated by human tyrosine kinases such as ZAP-70 and subsequently lead to a pronounced increase in pY residues on proteins. To ensure fast diffusion of analyte and rapid response core/shell silica micro- and nanoparticles with a thin polymer shell was chosen as the format for MIP synthesis. Fluorescent probe monomers consisting of fluorophore and recognition units are directly integrated in the polymer shell to obtain fluorescence response upon analyte binding.
We have synthesized the fluorescent MIP particles based on the previously published report for the novel phosphorylated targets with a high imprinting factor and high degree of discrimination between target analyte and non-phosphorylated and smaller competitors. The synthesized particles may be used in microfluidic devices for the rapid diagnostics of cancer.
Acoustically levitated droplets have been suggested as compartmentalized, yet wall-less microreactors for high-throughput reaction optimization purposes. The absence of walls is envisioned to simplify up-scaling of the optimized reaction conditions found in the microliter volumes. A consequent pursuance of high-throughput chemistry calls for a fast, robust and sensitive analysis suited for online interrogation. For reaction optimization, targeted Analysis with relatively low sensitivity suffices, while a fast, robust and automated sampling is paramount. To follow this approach, in this contribution, a direct coupling of levitated droplets to a homebuilt ion mobility spectrometer (IMS) is presented. The sampling, Transfer to the gas phase, as well as the ionization are all performed by a single exposure of the sampling volume to the resonant output of a mid-IR laser. Once formed, the nascent spatially and temporally evolving analyte ion cloud needs to be guided out of the acoustically confined trap into the inlet of the ion mobility spectrometer. Since the IMS is operated at ambient pressure, no fluid dynamic along a pressure Gradient can be employed. Instead, the transfer is achieved by the electrostatic potential gradient inside a dual ring electrode ion optics, guiding the analyte ion cloud into the first stage of the IMS linear drift tube accelerator. The design of the appropriate atmospheric pressure ion optics is based on the original vacuum ion optics design of Wiley and McLaren. The obtained experimental results nicely coincide with ion trajectory calculations based on a collisional model.
Fluorescent molecularly imprinted polymers (MIPs) for sensing of phosphorylated protein epitopes
(2019)
Early detection of cancer is instrumental for successful therapeutic outcomes, but it is presently a considerable challenge. Biopsy of potentially cancerous tissues is the gold standard in medicine for the diagnosis and prognosis of this disease; however, it may not be possible in many cases due to tumour position or other complications. Liquid biopsy-based detection of specific cancer markers in biological fluids can be easily performed via immunoanalytical techniques. However, antibody-based methods suffer from high cost of tumour specific antibodies due to difficult and lengthy production. Furthermore, antibodies may have limited specificity to the target molecule, and limited lifetimes. The so-called “plastic antibodies” as MIPs can be a more affordable, reliable and stable alternative to antibodies, especially for cancer diagnostics.
Our goal is to create MIP particles to selectively bind cancer biomarkers and rapidly display a fluorescence change upon interaction with molecules of interest. Epitopes containing the phosphorylated tyrosine (pY) motif such as tripeptide YpYG and tetrapeptide pYEEI were selected as target analytes. Cancers may disrupt tyrosine phosphorylation processes regulated by human tyrosine kinases such as ZAP-70 and subsequently lead to a pronounced increase in pY residues on proteins. To ensure fast diffusion of analyte and rapid response core/shell silica micro- and nanoparticles with a thin polymer shell was chosen as the format for MIP synthesis. Fluorescent probe monomers consisting of fluorophore and recognition units are directly integrated in the polymer shell to obtain fluorescence response upon analyte binding.
We have synthesized the fluorescent MIP particles based on the previously published report [W. Wan et al., Chem. Eur. J., 2017, 23, 15974-1598] for the novel phosphorylated targets with a high imprinting factor and high degree of discrimination between target analyte and non-phosphorylated and smaller competitors. The synthesized particles may be used in microfluidic devices for the rapid diagnostics of cancer.
Real-time monitoring of newly acidified organelles during autophagy in living cells is highly desirable for a better understanding of intracellular degradative processes. Herein, we describe a reaction-based boron dipyrromethene (BODIPY) dye containing strongly electron-withdrawing diethyl 2-cyanoacrylate groups at the α-positions. The probe exhibits intense red fluorescence in acidic organelles or the acidified cytosol while negligible fluorescence in other regions of the cell. The underlying mechanism is a nucleophilic reaction at the central meso-carbon of the indacene core, resulting in the loss of π-conjugation entailed by dramatic spectroscopic changes of more than 200 nm between its colorless, non-fluorescent leuco-BODIPY form and its red and brightly emitting form. The reversible transformation between red fluorescent BODIPY and leuco-BODIPY along with negligible cytotoxicity qualifies such dyes for rapid and direct intracellular lysosome imaging and cytosolic acidosis detection simultaneously without any washing step, enabling the real-time monitoring of newly acidified organelles during autophagy.
Asymmetrical laser-induced plasmas were investigated by a tomography approach based on the inverse Radon transform. Two distinct sources of asymmetricity were investigated: double-pulsed laser-induced plasmas in the orthogonal configuration and single-pulsed laser-induced plasmas under an inclined incidence angle. Both cases were observed at various delay times. The optical thinness of the laser-induced plasmas was achieved by appropriately adjusting the pulse energies. High temporal resolution is achieved by a gated intensified charge-coupled-device camera. The asymmetrical laser-induced plasmas are investigated in terms of their total emissivity, spectrally resolved emissivity, and temperature. The latter is obtained by the Saha–Boltzmann plot method. The images required for the inverse Radon transform technique were obtained with a high angular accuracy and reproducibility provided by mounting the spectrometer on a high-precision nano-positioning rotary stage. The plasmas were induced in the center of rotation of the stage. This arrangement allows the reconstruction of emissivity, which is integrated over a full spectral range (200-800 nm) or over a desired spectral range selected by a bandpass filter (~10 nm). It also allows for the reconstruction of spectrally-resolved emissivity in each cross sectional plasma slice by scanning the plasma across a spectrometer slit. The 3D maps of temperature and electron density are thus obtained for different types of asymmetric plasmas.
The spatial heterodyne spectrometer (SHS) concept, which is based on an interferometricoptical setup, boasts both the Fellgett and Jacquinot advantages. Theoretically it can provideboosted sensitivity and spectral resolution with respect to dispersion spectrometers in acompact, reasonably cheap arrangement without any moving components – this set ofcharacteristics can be attractive to a number of industrial, space and other field applications. The potential of SHS has already been demonstrated in IR and Raman spectroscopies(e.g.), and more recently also in LIBS. The scientific goal of our present project is toapply the SHS concept to the development of an optimized, but practical dual-grating,tunable SH-LIBS setup, which would possess appealing spectroscopic characteristics.During this development, we extensively rely on the computer-based simulation of theoptical setup, which is an efficient approach that we found to have been missing from earlierSHS efforts published. It can provide application-specific optimization of the SHS systemand predict the performance of the final system. In particular, we use optical simulation tostudy the effect of various important parameters on the relevant spectroscopic figures ofmerits of the system. We used the non-sequential ray-tracing mode of the Zemax/OpticStudio software for optical modelling of the SH-LIBS setup (Optical distortions were studiedin sequential mode). Characteristics of the setup and interferograms were calculated with atleast one million rays. All calculations were carried out for the visible spectral range(400-700 nm), using stepwise extension of monochromatic simulations with 5 nm steps.Wherever applicable, characteristic discrete visible wavelengths from the emissionspectrum of Hg discharge lamps (404.7 nm, 435.8 nm, 546.1 nm, 579.0 nm) were used for thecalculation of spectroscopy figures of merit and for the validation of simulation.
Asymmetrical laser-induced plasmas were investigated by a tomography approach based onthe inverse Radon transform. Two distinct sources of asymmetricity were investigated:double-pulsed laser-induced plasmas in the orthogonal configuration and single-pulsedlaser-induced plasmas under an inclined incidence angle. Both cases were observed atvarious delay times. The optical thinness of the laser-induced plasmas was achieved byappropriately adjusting the pulse energies. High temporal resolution was achieved by agated intensified charge-coupled-device camera. The asymmetrical laser-induced plasmaswere investigated in terms of their total emissivity, spectrally resolved emissivity, andtemperature. The latter was obtained by the Saha–Boltzmann plot method. The imagesrequired for the inverse Radon transform technique were obtained with a high angularaccuracy and reproducibility provided by mounting the spectrometer on a high-precisionnano-positioning rotary stage. The plasmas were induced in the center of rotation of thestage. This arrangement enabled the reconstruction of emissivity which was integrated overthe full spectral range (200–800 nm) or over a desired spectral range selected by a bandpassfilter (~10 nm). It also allowed for the reconstruction of spectrally-resolved emissivity ineach cross-sectional plasma slice by scanning the plasma across a spectrometer slit. The 3Dmaps of the temperature and electron density were thus obtained for different types ofasymmetric plasmas. The work will provide a more detailed description of the twoasymmetrical laser-induced plasmas. This might help with the development of LIBSinstrumentation using the orthogonal double-pulse geometry, or remote LIBS applicationswhich inherently rely on inclined-angle ablation.
A goal of this work is to apply the model, which was initially developed for laser induced plasmas, to plasmas used in chemical reactors, in particular, the inductively-coupled-RF discharge plasma. The model predicts equilibrium chemical compositions of reaction mixtures as functions of plasma temperature and stoichiometry of reactants. The mixtures investigated are BCl3/H2/Ar and BF3/H2/Ar where Ar serves as the plasma-forming gas and H2 as a binding agent which binds the active species Cl and F and Cl- and F-containing intermediates to produce gaseous B and its condensate. An additional goal is to obtain information about intermediate reaction products for different ratios of BCl3/H2 and BF3/H2 and at different temperatures and different Ar flow rates. Also, chemical reactions in laser induced plasmas (LIPs) created on calcium hydrate and calcium carbonate targets in argon are modeled. The results are compared with those obtained by means of the equilibrium model based on the minimization of Gibbs free energy.
Molecule formation in calcium carbonate and calcium hydroxide libs plasmas: model and experiment
(2019)
Analysis of calcium hydrate and calcium carbonate samples and their mixtures is important for archeology, anthropology, and geology. Laser-induced plasma spectroscopy (LIBS) is a suitable tool for such the analysis as it allows for in- and on-line real time chemical assays. LIBS is inherently a technique for atomic analysis; however, since recently, it is also used for molecular analysis. The information attained by the latter is mainly related to “secondary” chemistry that deals with re-association of atoms and ions into molecules at long delay times (≥10 μs) after the initial breakdown. Even though the direct information about the initial molecular content in the target may be lost, the molecular analysis by LIBS can still be useful to assess the composition of samples.
In this work, chemical reactions in laser induced plasmas (LIPs) created on calcium hydrate and calcium carbonate targets in argon are modeled and compared to experiment. The model is based on the assumption that all ionization processes and chemical reactions are at local thermodynamic equilibrium. A chemical composition of argon-calcium-oxygen and argon-calcium-hydrogen plasmas is studied as a function of plasma temperature and pressure. It is established that more than twenty simple and composite molecules and ions can be formed in the course of chemical reactions. The results are compared with those obtained by means of the equilibrium model based on the minimization of Gibbs free energy.
A goal of this work is to apply the model, which was initially developed for laser induced plasmas, to plasmas used in chemical reactors, in particular, the inductively-coupled-RF discharge plasma. The model predicts equilibrium chemical compositions of reaction mixtures as functions of plasma temperature and stoichiometry of reactants. The mixtures investigated are BCl3/H2/Ar and BF3/H2/Ar where Ar serves as the plasma-forming gas and H2 as a binding agent which binds the active species Cl and F and Cl- and F-containing intermediates to produce gaseous B and its condensate. An additional goal is to obtain information about intermediate reaction products for different ratios of BCl3/H2 and BF3/H2 and at different temperatures and different Ar flow rates. Also, chemical reactions in laser induced plasmas (LIPs) created on calcium hydrate and calcium carbonate targets in argon are modeled. The results are compared with those obtained by means of the equilibrium model based on the minimization of Gibbs free energy.