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Fluorescent molecularly imprinted polymers (MIPs) for sensing of phosphorylated protein epitopes
(2019)
Early detection of cancer is instrumental for successful therapeutic outcomes, but it is presently a considerable challenge. Biopsy of potentially cancerous tissues is the gold standard in medicine for the diagnosis and prognosis of this disease; however, it may not be possible in many cases due to tumour position or other complications. Liquid biopsy-based detection of specific cancer markers in biological fluids can be easily performed via immunoanalytical techniques. However, antibody-based methods suffer from high cost of tumour specific antibodies due to difficult and lengthy production. Furthermore, antibodies may have limited specificity to the target molecule, and limited lifetimes. The so-called “plastic antibodies” as MIPs can be a more affordable, reliable and stable alternative to antibodies, especially for cancer diagnostics.
Our goal is to create MIP particles to selectively bind cancer biomarkers and rapidly display a fluorescence change upon interaction with molecules of interest. Epitopes containing the phosphorylated tyrosine (pY) motif such as tripeptide YpYG and tetrapeptide pYEEI were selected as target analytes. Cancers may disrupt tyrosine phosphorylation processes regulated by human tyrosine kinases such as ZAP-70 and subsequently lead to a pronounced increase in pY residues on proteins. To ensure fast diffusion of analyte and rapid response core/shell silica micro- and nanoparticles with a thin polymer shell was chosen as the format for MIP synthesis. Fluorescent probe monomers consisting of fluorophore and recognition units are directly integrated in the polymer shell to obtain fluorescence response upon analyte binding.
We have synthesized the fluorescent MIP particles based on the previously published report for the novel phosphorylated targets with a high imprinting factor and high degree of discrimination between target analyte and non-phosphorylated and smaller competitors. The synthesized particles may be used in microfluidic devices for the rapid diagnostics of cancer.
Fluorescent molecularly imprinted polymers (MIPs) for sensing of phosphorylated protein epitopes
(2019)
Early detection of cancer is instrumental for successful therapeutic outcomes, but it is presently a considerable challenge. Biopsy of potentially cancerous tissues is the gold standard in medicine for the diagnosis and prognosis of this disease; however, it may not be possible in many cases due to tumour position or other complications. Liquid biopsy-based detection of specific cancer markers in biological fluids can be easily performed via immunoanalytical techniques. However, antibody-based methods suffer from high cost of tumour specific antibodies due to difficult and lengthy production. Furthermore, antibodies may have limited specificity to the target molecule, and limited lifetimes. The so-called “plastic antibodies” as MIPs can be a more affordable, reliable and stable alternative to antibodies, especially for cancer diagnostics.
Our goal is to create MIP particles to selectively bind cancer biomarkers and rapidly display a fluorescence change upon interaction with molecules of interest. Epitopes containing the phosphorylated tyrosine (pY) motif such as tripeptide YpYG and tetrapeptide pYEEI were selected as target analytes. Cancers may disrupt tyrosine phosphorylation processes regulated by human tyrosine kinases such as ZAP-70 and subsequently lead to a pronounced increase in pY residues on proteins. To ensure fast diffusion of analyte and rapid response core/shell silica micro- and nanoparticles with a thin polymer shell was chosen as the format for MIP synthesis. Fluorescent probe monomers consisting of fluorophore and recognition units are directly integrated in the polymer shell to obtain fluorescence response upon analyte binding.
We have synthesized the fluorescent MIP particles based on the previously published report [W. Wan et al., Chem. Eur. J., 2017, 23, 15974-1598] for the novel phosphorylated targets with a high imprinting factor and high degree of discrimination between target analyte and non-phosphorylated and smaller competitors. The synthesized particles may be used in microfluidic devices for the rapid diagnostics of cancer.
Asymmetrical laser-induced plasmas were investigated by a tomography approach based on the inverse Radon transform. Two distinct sources of asymmetricity were investigated: double-pulsed laser-induced plasmas in the orthogonal configuration and single-pulsed laser-induced plasmas under an inclined incidence angle. Both cases were observed at various delay times. The optical thinness of the laser-induced plasmas was achieved by appropriately adjusting the pulse energies. High temporal resolution is achieved by a gated intensified charge-coupled-device camera. The asymmetrical laser-induced plasmas are investigated in terms of their total emissivity, spectrally resolved emissivity, and temperature. The latter is obtained by the Saha–Boltzmann plot method. The images required for the inverse Radon transform technique were obtained with a high angular accuracy and reproducibility provided by mounting the spectrometer on a high-precision nano-positioning rotary stage. The plasmas were induced in the center of rotation of the stage. This arrangement allows the reconstruction of emissivity, which is integrated over a full spectral range (200-800 nm) or over a desired spectral range selected by a bandpass filter (~10 nm). It also allows for the reconstruction of spectrally-resolved emissivity in each cross sectional plasma slice by scanning the plasma across a spectrometer slit. The 3D maps of temperature and electron density are thus obtained for different types of asymmetric plasmas.
A goal of this work is to apply the model, which was initially developed for laser induced plasmas, to plasmas used in chemical reactors, in particular, the inductively-coupled-RF discharge plasma. The model predicts equilibrium chemical compositions of reaction mixtures as functions of plasma temperature and stoichiometry of reactants. The mixtures investigated are BCl3/H2/Ar and BF3/H2/Ar where Ar serves as the plasma-forming gas and H2 as a binding agent which binds the active species Cl and F and Cl- and F-containing intermediates to produce gaseous B and its condensate. An additional goal is to obtain information about intermediate reaction products for different ratios of BCl3/H2 and BF3/H2 and at different temperatures and different Ar flow rates. Also, chemical reactions in laser induced plasmas (LIPs) created on calcium hydrate and calcium carbonate targets in argon are modeled. The results are compared with those obtained by means of the equilibrium model based on the minimization of Gibbs free energy.
Molecule formation in calcium carbonate and calcium hydroxide libs plasmas: model and experiment
(2019)
Analysis of calcium hydrate and calcium carbonate samples and their mixtures is important for archeology, anthropology, and geology. Laser-induced plasma spectroscopy (LIBS) is a suitable tool for such the analysis as it allows for in- and on-line real time chemical assays. LIBS is inherently a technique for atomic analysis; however, since recently, it is also used for molecular analysis. The information attained by the latter is mainly related to “secondary” chemistry that deals with re-association of atoms and ions into molecules at long delay times (≥10 μs) after the initial breakdown. Even though the direct information about the initial molecular content in the target may be lost, the molecular analysis by LIBS can still be useful to assess the composition of samples.
In this work, chemical reactions in laser induced plasmas (LIPs) created on calcium hydrate and calcium carbonate targets in argon are modeled and compared to experiment. The model is based on the assumption that all ionization processes and chemical reactions are at local thermodynamic equilibrium. A chemical composition of argon-calcium-oxygen and argon-calcium-hydrogen plasmas is studied as a function of plasma temperature and pressure. It is established that more than twenty simple and composite molecules and ions can be formed in the course of chemical reactions. The results are compared with those obtained by means of the equilibrium model based on the minimization of Gibbs free energy.
A goal of this work is to apply the model, which was initially developed for laser induced plasmas, to plasmas used in chemical reactors, in particular, the inductively-coupled-RF discharge plasma. The model predicts equilibrium chemical compositions of reaction mixtures as functions of plasma temperature and stoichiometry of reactants. The mixtures investigated are BCl3/H2/Ar and BF3/H2/Ar where Ar serves as the plasma-forming gas and H2 as a binding agent which binds the active species Cl and F and Cl- and F-containing intermediates to produce gaseous B and its condensate. An additional goal is to obtain information about intermediate reaction products for different ratios of BCl3/H2 and BF3/H2 and at different temperatures and different Ar flow rates. Also, chemical reactions in laser induced plasmas (LIPs) created on calcium hydrate and calcium carbonate targets in argon are modeled. The results are compared with those obtained by means of the equilibrium model based on the minimization of Gibbs free energy.
Glycosylation is heavily altered in tumor cells compared with healthy cells, because of the different levels of expression of glycosyltransferases, glycosidases and monosaccharide transporters within a cancerous microenvironment. 1 Tumor-associated glycans, especially sialic acid (SA) conjugates, which are good candidates of tumor markers, can be used for Cancer early diagnosis. 2 However, studies on SA-binding lectins demonstrate that the type of SAlinkage and the glycosylation position of carbohydrate can greatly influence the affinity. 3 Therefore, there is a need for diagnostic tools owning high specificity and strong affinity to analyze and determine SA glycosylation motifs. 4 Herein, we report the development of fluorescent core/shell/shell nanoparticles where the outermost layer is a thin molecularly imprinted polymer (MIP) film binding to tumor cells in vitro by targeting cell surface SA. The core is made of N-doped red carbon nanodots (R-CNDs) which were prepared by hydrothermal synthesis, emitting intense red fluorescence under fluorescence microscopy imaging conditions. Silica coating of R-CNDs was achieved by a microemulsion method, resulting in ca. 40 nm large silica-coated CNDs (named R-CSNs).
Finally, a thin MIP-shell was accomplished by using a combination of non-fluorescent
monomer (3), functional monomers (1, 2) and cross-linker (EGDMA) for polymerization
(Figure 1). Transmission electron microscopy (TEM) is used for structural characterization of
the formation of MIP layer, and the results of cell-based binding tests show a promising binding
affinity of MIPs to tumor cells, allowing a relatively robust, specific and rapid analytical
method for cancer biopsies.
Spatial Heterodyne Spectroscopy (SHS) is a spectrometric technique that combines both dispersive and interferometric features into a customizable instrument. The Basis of SHS is a Michelson interferometer with its mirrors replaced by diffraction gratings and with no moving parts. The output signal from SHS is the interferogram, which is recorded with a 1D or 2D pixel array detector. The spatial periodicity of the fringes on the interferogram is a function of the wavelength of the diffracted light. Using the Fast Fourier Transform, the original optical spectrum that enters SHS is retrieved. The light that is analyzed by SHS can come from a variety of sources. In our work, we used Raman scattering and Laser-Induced Plasma to perform quantitative and qualitative analyses. Figure 1 compares the performance of the SHS with that of high Resolution echelle and portable low-resolution asymmetrically crossed Czerny-Turner spectrometers (OO in Fig.1). The analyzed light came from the plasma induced on a stainless-steel reference material. The SHS exhibits the resolution comparable to that of the echelle spectrometer used, about 8000. Due to a high throughput of the SHS (theoretically, ~200 times higher than that of grating instruments), the number of spectra needed to be accumulated for comparable signal-to-noise ratios is much smaller than in the case of the echelle and comparable to OO spectrometers.
Examples of Raman SHS applied to several pure liquids are given in Fig. 2. Raman SHS was used in three different settings: (i) for classification of six types of oils, (ii) for univariate/multivariate analysis of binary mixture cyclohexane-isopropanol, and (iii) for multivariate analysis of glycerol solution in water. For the last two settings, chemometric analysis of the spectra yielded linear calibration plots over the range 1-90% of concentrations of isopropanol in cyclohexane, and 0.5-10% of glycerol in water.
Chlorination of pool water and wastewater, in food and pharmaceutical production, as well as in pesticide and paper manufacturing is a routinely used technique. However, the amount of chlorine in water must be strictly adjusted, to ensure enough concentration to kill pathogenic bacteria and viruses, while preventing too high concentrations inducing negative effects on human health. As an indicator, a molecular fluorescent probe based on a BODIPY structure was designed. This indicator exhibits a sensitive and selective fluorescence response upon increasing concentrations of hypochlorite in aqueous solvent mixtures. Real-time analyses became possible after the integration of this fluorescent indicator into newly designed 2D & 3D microfluidic chips incorporating a passive sinusoidal mixer and a micro-hydrocyclone, respectively. A comparison of the two microfluidic systems, including their ability to prevent accumulation or circulation of microbubbles, has shown excellent fluidic behaviour for the micro-hydrocyclone device. This system was distinctly more robust against gas bubbles, showed a higher signal gain and allowed to halve the limit of detection to 0.02 mg L–1. The use of the 3D system to quantify the chlorine content of pool water samples for sensitive and quantitative chlorine monitoring has been demonstrated.
The Dark Side of Science
(2019)
The Joint Summer School of the two Marie Skłodowska-Curie Innovative Training Networks (ITN) “BioCapture” and “GlycoImaging”, funded by the EU within the Horizon 2020 framework programme, which are both devoted to the development of new methods for cancer biomarker and cancer cell detection, will take place at the Adlershof Campus of BAM. 19 Early stage researchers of both projects will convene, discuss their own science and plan future collaborative research. Training in scientific writing (instructor: Luita Spangler, Free University of Berlin), an employability workshop (Antti Kapanen, University of Applied Sciences Berlin) and first contacts with the “dark side of science” (Brian R. Pauw, BAM) will complement the programme of the summer school.