Filtern
Dokumenttyp
- Posterpräsentation (27) (entfernen)
Referierte Publikation
- nein (27)
Schlagworte
- SAXS (27) (entfernen)
Organisationseinheit der BAM
Small-angle X-ray scattering (SAXS) can be used for structural de- termination of biological macromolecules and polymers in their na- tive states. To improve the reliability of such experiments, the re- duction of radiation damage occurring from exposure to X-rays is needed.One method, is the use of scavenger molecules that protect macromolecules against radicals produced by radiation exposure.In this study we investigate the feasibility to apply the compatible solute, osmolyte and radiation protector Ectoine (THP(B)) as a scavenger throughout SAXS measurements of single-stranded DNA-binding protein Gene-V Protein (G5P/GVP). Therefore we monitor the radiation induced changes of G5P during bio-SAXS. The resulting microscopic energy-damage relation was determined by particle scattering simu- lations with TOPAS/Geant4. The results are interpreted in terms of radical scavenging as well as post-irradiation effects, related to preferential-exclusion from the protein surface. Thus, Ectoine provides an non-disturbing way to improve structure-determination of proteins via bio-SAXS in future studies.
Small-angle X-ray scattering (SAXS) can be used for structural determination of biological macromolecules and polymers in their native states (e.g. liquid phase). This means that the structural changes of (bio-)polymers, such as proteins and DNA, can be monitored in situ to understand their sensitivity to changes in chemical environments. In an attempt to improve the reliability of such experiments, the reduction of radiation damage occurring from exposure to X-rays is required. One such method, is to use scavenger molecules to protect macromolecules against radicals produced during radiation exposure, such as reactive oxygen species (ROS). In this study we investigate the feasibility of applying the compatible solute, osmolyte and radiation protector Ectoine (THP(B)), as a scavenger molecule during SAXS measurements of the single-stranded DNA-binding protein Gene-V Protein (G5P/GVP). In this case, we monitor the radiation induced changes of G5P during bio-SAXS measurments and the resulting microscopic energy-damage relation was determined from microdosimetric calculations by Monte-Carlo based particle scattering simulations with TOPAS/Geant4 and a custom target-model. This resulted in a median-lethal energy deposit of pure G5P at 4 mg mL−1 of E1/2 = 7 ± 5 eV, whereas a threefold increase of energy-deposit was needed under the presence of Ectoine to reach the same level of damage. This indicates that Ectoine increases the possible exposure time before radiation-damage to G5P is observed. Furthermore, the dominant type of damage shifted from aggregation in pure solutions towards a fragmentation for solutions containing Ectoine as a cosolute. These results are interpreted in terms of indirect radiation damage by reactive secondary species, as well as post-irradiation effects, related to preferential-exclusion of the cosolute from the protein surface. Hence, Ectoine is shown to provide a non-disturbing way to improve structure-determination of proteins via bio-SAXS in future studies.
Small-angle X-ray scattering (SAXS) can be used for structural determination of biological macromolecules and polymers in their native states (e.g. liquid phase). This means that the structural changes of (bio-)polymers, such as proteins and DNA, can be monitored in situ to understand their sensitivity to changes in chemical environments. In an attempt to improve the reliability of such experiments, the reduction of radiation damage occurring from exposure to X-rays is required. One such method, is to use scavenger molecules to protect macromolecules against radicals produced during radiation exposure, such as reactive oxygen species (ROS). In this study we investigate the feasibility of applying the compatible solute, osmolyte and radiation protector Ectoine (THP(B)), as a scavenger molecule during SAXS measurements of the single-stranded DNA-binding protein Gene-V Protein (G5P/GVP). In this case, we monitor the radiation induced changes of G5P during bio-SAXS measurments and the resulting microscopic energy-damage relation was determined from microdosimetric calculations by Monte-Carlo based particle scattering simulations with TOPAS/Geant4 and a custom target-model. This resulted in a median-lethal energy deposit of pure G5P at 4 mg mL−1 of E1/2 = 7 ± 5 eV, whereas a threefold increase of energy-deposit was needed under the presence of Ectoine to reach the same level of damage. This indicates that Ectoine increases the possible exposure time before radiation-damage to G5P is observed. Furthermore, the dominant type of damage shifted from aggregation in pure solutions towards a fragmentation for solutions containing Ectoine as a cosolute. These results are interpreted in terms of indirect radiation damage by reactive secondary species, as well as post-irradiation effects, related to preferential-exclusion of the cosolute from the protein surface. Hence, Ectoine is shown to provide a non-disturbing way to improve structure-determination of proteins via bio-SAXS in future studies.
Zinc oxide nanostructures possess optical properties that are dependent on particle shape and size. Here, we report on the synthesis of elongated zinc oxide tubes via the in-situ aggregation of spherical particles. Using a custom-built, lab-based instrument, x-ray scattering can be investigated over more than three decades in scattering vector q, allowing for a complete investigation from atomic distances up to larger-than-nano structures.
For this study, the hydrolytic synthesis of stearate stabilized zinc oxide nanostructures in tetrahydrofuran was performed and the reaction mixture was continuously fed through the SAXS/WAXS apparatus by means of a peristaltic pump. For comparison to nanospheres, oleate-functionalized zinc oxide particles were synthesized in a microwave-assisted fashion, and depending on reaction temperature, sphere radii could be adjusted between 2.6 and 3.8 nm, changing the optical and crystal lattice properties.
The evaluation of the in-situ measurements showed that at the beginning of the synthesis of the stearate-stabilized zinc oxide, similar, spherical particles are formed as in the oleate-based synthesis. In contrast, as the reaction progresses, the stearate-capped particles aggregate into elongated rods with radii of a few nanometres, which eventually form the nanotubes. These have radii of 30-50 nm and lengths of several hundred nanometres. Nevertheless, these structures still possess optical properties like the ultra-small zinc oxide spheres, i.e. a bright, yellow fluorescence. Therefore, we assume that the originally formed, ultra-small spheres, are still present within the tube structure, but separated by stearate, and thus determine their fluorescence properties.
Small-angle scattering (SAS) offers a reliable route to characterize the nanostructure of large amounts of material with a minimum of tedium, for example, easily extracting size distributions and volume fractions. There are a variety of analysis programs available while the evaluation of SAS measurements has been dominated by the classical curve fitting approach. SASfit represents such a classical curve fitting toolbox: it is one of the mature programs for SAS data analysis and has been available and used for many years. The latest developments will be presented and a scattering function of a mass fractal model of branched polymers in solution is provided as an example for implementing a plug-in.
Alternatively to classical curve fitting, part two presents the latest developments of the user-friendly open-source Monte Carlo regression package McSAS. The form-free Monte Carlo nature of McSAS means, it is not necessary to provide further restrictions on the mathematical form of the parameter distribution: without prior knowledge, McSAS is able to extract complex multimodal or odd- shaped parameter distributions from SAS data. The headless mode is presented by an example of operation within interactive programming environments such as a Jupyter notebook.
Zinc is an essential trace element and is ingested daily by humans, partly in dissolved form. The first contact is with saliva, in which many ions are dissolved whose solubility product with zinc can be low. This could result in compounds forming, possibly in nanoparticular form, which could have different effects on the organism than pure zinc ions. Available biopolymers, e.g. α-amylase, can in turn stabilise as-formed nanostructures.
In this study, we report on the saliva stage of the artificial digestion of zinc chloride as a model substance for zinc ions. To facilitate in situ measurements, the sample is continuously passed through a small-angle x-ray scattering (SAXS) system. This custom-made machine is capable of measuring over a wide q-range and thereby able to resolve structures from around 250 nm down to the crystal structure. It is thus an excellent tool for investigating both the particle size distribution and the atomic structure of the sample.
By curve fitting (see Figure 1), we found that shortly after addition of zinc chloride to saliva, small particles with a mean radius of 1.9 ± 0.1 nm and a distribution width of 0.6 ± 0.1 nm formed. These particles are aggregated to compact mass fractals with a fractal aggregate size of 14.7 ± 0.1 nm and a fractal dimension of 2.96 ± 0.02. Approximately 7200 single particles stick together by protein and form mass fractals, whose radii of gyration were found to be 36 ± 1 nm. To determine the compound that was formed, infrared spectroscopy was used in addition to the SAXS measurements, and zinc phosphate was identified as the product.
Zinc is an essential trace element and is ingested daily by humans, partly in dissolved form. The first contact is with saliva, in which many ions are dissolved whose solubility product with zinc can be low. This could result in compounds forming, possibly in nanoparticular form, which could have different effects on the organism than pure zinc ions.
In this study, we report on the saliva stage of the artificial digestion of zinc chloride as a model substance for zinc ions. To facilitate in situ measurements, the sample is continuously passed through a small-angle x-ray scattering (SAXS) system. This custom-made machine is capable of measuring over a wide q-range and thereby able to resolve structures from around 250 nm down to the crystal structure. It is thus an excellent tool for investigating both the particle size distribution and the atomic structure of the sample.
By curve fitting, we found that shortly after addition of zinc chloride to saliva, small particles with a mean radius of 1.9 ± 0.1 nm and a distribution width of 0.6 ± 0.1 nm formed. These particles are aggregated to compact mass fractals with a fractal aggregate size of 14.7 ± 0.1 nm and a fractal dimension of 2.96 ± 0.02. Approximately 7200 single particles form each mass fractal, whose radius of gyration was found to be 36 ± 1 nm. The growth of these structures continues over the course of several weeks. To determine the compound that was formed, infrared spectroscopy was used in addition to the SAXS measurements, and zinc phosphate was identified as the product.
Zinc oxide (ZnO) nanoparticles find manifold applications, most prominently in photovoltaics, where their unique optical properties are exploited. Particularly important are their band gap energy of 3.37 eV, which can be widely tuned through doping, and a large exciton binding energy of 60 mV. As a wide-bandgap II-VI semiconductor, the optical band gap energy and fluorescence energy become size-dependent when moving to particle radii of a few nanometers.
To gain a deeper insight into this issue, we report on a microwave-assisted, size-selective synthesis of pure ZnO nanoparticles. By hydrolysis of the metal precursor in presence of a strong base at temperatures exceeding the solvent’s boiling point, the reaction is dramatically accelerated, and narrowly dispersed, spherical particles are yielded within seconds – instead of hours at lower temperatures. The determination of their size distributions in high resolution using small-angle x-ray scattering (SAXS) allows for a precise mapping of the optical properties (UV/Vis absorption and fluorescence) to particle size.
We observed that the mean particle radii increase from 2.6 ± 0.1 nm with increasing synthesis temperature from 125 °C to 200 °C. This is accompanied by a red shift of the optical band gap and the fluorescence energies, the latter of which can be seen in Figure 1. Thus, undoped ZnO nanoparticles with narrow size distributions and pre-defined size as well as optical properties can be obtained through a microwave-assisted synthesis.
Polymeric core-shell particles were synthesized in a semi-batch emulsion polymerization process. The shell of the particles consist of PVDF with a high amount of beta-phase. Small-angle X-ray scattering (SAXS) was used to quantify the size of the cores of the particles and the thickness of the shell.