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We employ in-house generated synthetic Al-Si matrix composite XCT data for training deep convolutional neural networks for XCT data conditioning and automatic segmentation. We propose an in-house multilevel deep conditioning framework capable of rectifying noise and blur in corrupted XCT data sequentially. Furthermore, for automatic segmentation, we utilize a special in-house network coupled with a novel iterative segmentation algorithm capable of generalized learning from synthetic data. We report a consistent SSIM efficiency of 92%, 99%, and 95% for the combined denoising/deblurring, standalone denoising, and standalone deblurring, respectively. The overall segmentation precision was over 85% according to the Dice coefficient. We used experimental XCT data from various scans of Al-Si matrix composites reinforced with ceramic particles and fibers.