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- Beta-cyclodextrin (2) (entfernen)
ß-Cyclodextrin (ßCD)-formic acid (1) and ß-CDacetic acid (2) inclusion complexes crystallizeas ß-CD...0.3HCOOH...7.7H2O and ß-CD...0.4CH3COOH...7.7H2O in themonoclinic space group P21 with comparable unit cell constants. Anisotropic refinement of atomic parameters against X-ray diffractiondata with Fo 2 > 2 (Fo 2) (986/8563 and 991/8358) converged at R-factors of 0.051 and 0.054 for 1 and 2,respectively. In both complexes, the ß-CD molecularconformation, hydration pattern and crystal packing are similar,but the inclusion geometries of the guest molecules are different.The ß-CD macrocycles adopt a ``round'' conformationstabilized by intramolecular, interglucose O3(n)...O2(n + 1)hydrogen bonds and their O6H groups are systematically hydratedby water molecules. In the asymmetric unit, each complex contains one ß-CD, 0.3 formic acid (or 0.4 acetic acid), and 7.7 water moleculesthat are distributed over 9 positions. Water sites located in the ß-CD cavity hydrogen bond to the guest molecule. In thecrystal lattice, ß-CD molecules are packed in a typical ``herringbone'' fashion. In 1, the formic acid (occupancy 0.3) is entirely included in the ß-CD cavity such that its C atom is shifted from the O4-plane center to the ß-CD O6-side by 2.90 Å and C=O, C-O bonds point to this side. In 2, the acetic acid (occupancy 0.4) is completely embedded in the ß-CD cavity, in which the carboxylic C atom is displaced from the O4-plane centerto the ß-CD O6-side by 0.87 Å; the C=O bond directsto the ß-CD O6-side and makes an angle of 15°to the ß-CD molecular axis. Furthermore, bothdimethyl-ß-CD-acetic acid and ß-CD-acetic acidcomplexes form a cage structure, showing that the small guestsenclosed entirely in the cavity either in ß-CD or indimethyl--CD do not affect the packing of the host macrocycles.
A novel approach for the simulation of host.guest systems by systematically scanning the host moleculefs orientations within the guest cavity is presented along with a thermodynamic strategy for determining preferential binding modes and corresponding optimal interaction energies between host and guest molecules. By way of example, the elution order of hexabromocyclododecane stereoisomers from high performance liquid chromatography separation on a permethylated β-cyclcodextrin stationary phase has been computed using classical molecular dynamics simulations with the explicit solvents water and acetonitrile. Comparison of estimated with experimental separation data reveals remarkable squared coefficients of correlation with R2=0.87 and a very high correlation RLOO2 . 0:72 using the leaveone-out cross-validation method and water as solvent. In particular, the approach presented shapes up as very robust in terms of the evaluated time range under consideration, reflecting well thermodynamic equilibria. These and further observations correlating with experimental results suggest the suitability of the underlying force fields and our multi-mode approach for the estimation of relative binding affinities for host–guest systems with unknown binding modes.